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Antimicrobial and antibiofilm properties of procyanidins: potential for clinical and biotechnological applications. 原花青素的抗菌和抗生物膜特性:临床和生物技术应用潜力。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-09-20 DOI: 10.1080/1040841X.2024.2404509
Mariana M G Mattos, Sérgio Antunes Filho, Gabriel R Martins, Lara Souza Venturi, Vinícius Benjamim Canetti, Fabienne Antunes Ferreira, Debora Foguel, Ayla Sant'Ana da Silva

Procyanidins (PCs) have emerged as agents with potential antimicrobial and antibiofilm activities, although their mechanisms of action and structure-activity relationships remain poorly understood. This review assessed the potential mechanisms of action and applications of these compounds to explore these aspects. Studies on the antimicrobial properties of PCs suggest that they are involved in osmotic imbalance, DNA interactions and metabolic disruption. Although less studied, their antibiofilm activities include antiadhesive effects and the modulation of mobility and quorum sensing. However, most research has used uncharacterized plant extracts for in vitro assays, limiting the understanding of the structure-activity relationships of PCs and their in vivo mechanisms. Clinical trials on the antimicrobial and antibiofilm properties of PCs have not clarified these issues due to nonstandardized methodologies, inadequate chemical characterization, and the limited number of studies, preventing a consensus and evaluation of the in vivo effects. Additionally, patent analysis revealed that technological developments in the antimicrobial and antibiofilm uses of PCs are concentrated in health care and dental care, but new biotechnological uses are emerging. Therefore, while PCs are promising antimicrobial and antibiofilm compounds, further research into their chemical structures and mechanisms of action is crucial for evidence-based applications in biotechnology and health care.

原花青素(PCs)已成为具有潜在抗菌和抗生物膜活性的制剂,但人们对其作用机制和结构-活性关系仍然知之甚少。本综述对这些化合物的潜在作用机制和应用进行了评估,以探讨这些方面的问题。对多氯化萘抗菌特性的研究表明,多氯化萘参与了渗透失衡、DNA 相互作用和新陈代谢破坏。虽然研究较少,但它们的抗生物膜活性包括抗粘附作用、调节流动性和法定人数感应。然而,大多数研究都使用未定性的植物提取物进行体外检测,从而限制了对多氯化萘结构-活性关系及其体内机制的了解。由于方法不规范、化学特征描述不充分以及研究数量有限,有关多氯联苯抗菌和抗生物膜特性的临床试验尚未澄清这些问题,因此无法就体内效应达成共识和进行评估。此外,专利分析表明,多氯联苯抗菌和抗生物膜方面的技术发展主要集中在医疗保健和牙科护理领域,但新的生物技术用途正在出现。因此,虽然多氯联苯是很有前景的抗菌和抗生物膜化合物,但进一步研究其化学结构和作用机制对于生物技术和医疗保健领域的循证应用至关重要。
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引用次数: 0
Precise pathogen quantification by CRISPR-Cas: a sweet but tough nut to crack. 利用 CRISPR-Cas 对病原体进行精确定量:甜蜜但难以攻克的难题。
IF 6.5 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-09-17 DOI: 10.1080/1040841x.2024.2404041
Zhihao Yao,Wanglu Li,Kaiyu He,Hongmei Wang,Yan Xu,Xiahong Xu,Qun Wu,Liu Wang
Pathogen detection is increasingly applied in medical diagnosis, food processing and safety, and environmental monitoring. Rapid, sensitive, and accurate pathogen quantification is the most critical prerequisite for assessing protocols and preventing risks. Among various methods evolved, those based on clustered regularly interspaced short palindromic repeats (CRISPR)-associated proteins (Cas) have been developed as important pathogen detection strategies due to their distinct advantages of rapid target recognition, programmability, ultra-specificity, and potential for scalability of point-of-care testing (POCT). However, arguments and concerns on the quantitative capability of CRISPR-based strategies are ongoing. Herein, we systematically overview CRISPR-based pathogen quantification strategies according to the principles, properties, and application scenarios. Notably, we review future challenges and perspectives to address the of precise pathogen quantification by CRISPR-Cas. We hope the insights presented in this review will benefit development of CRISPR-based pathogen detection methods.
病原体检测越来越多地应用于医疗诊断、食品加工和安全以及环境监测。快速、灵敏和准确的病原体定量是评估方案和预防风险的最关键前提。在已发展出的各种方法中,基于聚类规律性间隔短回文重复序列(CRISPR)相关蛋白(Cas)的方法因其快速目标识别、可编程性、超特异性和潜在的床旁检测(POCT)可扩展性等独特优势,已被开发为重要的病原体检测策略。然而,关于基于CRISPR策略的定量能力的争论和担忧仍在继续。在此,我们根据原理、特性和应用场景系统地概述了基于 CRISPR 的病原体定量策略。值得注意的是,我们回顾了通过 CRISPR-Cas 实现病原体精确定量的未来挑战和前景。我们希望这篇综述中提出的见解将有助于开发基于 CRISPR 的病原体检测方法。
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引用次数: 0
Male-specific bacteriophages and their potential on combating the spreading of T4SS-bearing antimicrobial resistance plasmids. 雄性特异性噬菌体及其在阻止携带 T4SS 的抗菌性质粒传播方面的潜力。
IF 6.5 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-09-10 DOI: 10.1080/1040841x.2024.2400150
Jun Li,Pilar García,Xing Ji,Ran Wang,Tao He
Antimicrobial resistance (AMR) has been recognized as an important health crisis in the twenty first century. Type IV secretion systems (T4SSs) play key roles in the dissemination of AMR plasmids. Novel strategies that combat AMR problem by targeting T4SS sprung up in recent years. Here, we focus on the strategy of male-specific phages that could target and kill bacteria carrying conjugative AMR plasmids encoding T4SSs. We reviewed the recent advances in male-specific phages, including anti-conjugation mechanisms, clinical isolation and identification methods, classification and characteristics, in vitro and in vivo anti-conjugation efficacy and improving strategies. Male-specific phages constitute exciting candidates for developing sustainable anti-resistance biocontrol applications.
抗菌素耐药性(AMR)已被认为是二十一世纪的一个重要健康危机。IV 型分泌系统(T4SS)在 AMR 质粒的传播过程中发挥着关键作用。近年来,通过靶向 T4SS 解决 AMR 问题的新策略层出不穷。在这里,我们重点讨论了雄性特异性噬菌体的策略,这种噬菌体可以靶向杀死携带编码 T4SS 的共轭型 AMR 质粒的细菌。我们回顾了雄性特异性噬菌体的最新进展,包括抗共轭机制、临床分离和鉴定方法、分类和特征、体外和体内抗共轭功效以及改进策略。雄性特异性噬菌体是开发可持续抗药性生物控制应用的令人兴奋的候选物质。
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引用次数: 0
Pseudomonas aeruginosa: metabolic allies and adversaries in the world of polymicrobial infections. 铜绿假单胞菌:多微生物感染世界中的代谢盟友和对手。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-09-03 DOI: 10.1080/1040841X.2024.2397359
Chandni Sachdeva, Kapaettu Satyamoorthy, Thokur Sreepathy Murali

Pseudomonas aeruginosa (PA), an opportunistic human pathogen that is frequently linked with chronic infections in immunocompromised individuals, is also metabolically versatile, and thrives in diverse environments. Additionally, studies report that PA can interact with other microorganisms, such as bacteria, and fungi, producing unique metabolites that can modulate the host immune response, and contribute to disease pathogenesis. This review summarizes the current knowledge related to the metabolic interactions of PA with other microorganisms (Staphylococcus, Acinetobacter, Klebsiella, Enterococcus, and Candida) and human hosts, and the importance of these interactions in a polymicrobial context. Further, we highlight the potential applications of studying these metabolic interactions toward designing better diagnostic tools, and therapeutic strategies to prevent, and treat infections caused by this pathogen.

铜绿假单胞菌(Pseudomonas aeruginosa,PA)是一种机会性人类病原体,经常与免疫力低下人群的慢性感染有关。此外,有研究报告称,PA 能与细菌和真菌等其他微生物相互作用,产生独特的代谢产物,从而调节宿主的免疫反应,促进疾病的发病。本综述总结了 PA 与其他微生物(葡萄球菌、醋烷杆菌、克雷伯氏菌、肠球菌和念珠菌)和人类宿主的代谢相互作用的现有相关知识,以及这些相互作用在多微生物背景下的重要性。此外,我们还强调了研究这些代谢相互作用对设计更好的诊断工具和治疗策略的潜在应用,以预防和治疗由这种病原体引起的感染。
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引用次数: 0
New insights into mycotoxin risk management through fungal population genetics and genomics. 通过真菌群体遗传学和基因组学对霉菌毒素风险管理的新认识。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-26 DOI: 10.1080/1040841X.2024.2392179
Toan Bao Hung Nguyen, Marie Foulongne-Oriol, Jean-Luc Jany, Gaétan le Floch, Adeline Picot

Mycotoxin contamination of food and feed is a major global concern. Chronic or acute dietary exposure to contaminated food and feed can negatively affect both human and animal health. Contamination occurs through plant infection by toxigenic fungi, primarily Aspergillus and Fusarium spp., either before or after harvest. Despite the application of various management strategies, controlling these pathogens remains a major challenge primarily because of their ability to adapt to environmental changes and selection pressures. Understanding the genetic structure of plant pathogen populations is pivotal for gaining new insights into their biology and epidemiology, as well as for understanding the mechanisms behind their adaptability. Such deeper understanding is crucial for developing effective and preemptive management strategies tailored to the evolving nature of pathogenic populations. This review focuses on the population-level variations within the two most economically significant toxigenic fungal genera according to space, host, and pathogenicity. Outcomes in terms of migration patterns, gene flow within populations, mating abilities, and the potential for host jumps are examined. We also discuss effective yet often underutilized applications of population genetics and genomics to address practical challenges in the epidemiology and disease control of toxigenic fungi.

食品和饲料中的霉菌毒素污染是全球关注的一个主要问题。长期或急性食用受污染的食品和饲料会对人类和动物的健康产生负面影响。植物在收获前或收获后受到致毒真菌(主要是曲霉菌属和镰刀菌属)的感染,就会产生污染。尽管采用了各种管理策略,但控制这些病原体仍然是一项重大挑战,这主要是因为它们具有适应环境变化和选择压力的能力。了解植物病原体种群的遗传结构对于深入了解其生物学和流行病学以及了解其适应性背后的机制至关重要。这种更深入的了解对于针对病原体种群不断变化的特性制定有效和先发制人的管理策略至关重要。本综述重点关注两个最具经济意义的致毒真菌属在空间、宿主和致病性方面的种群水平变化。我们研究了迁移模式、种群内的基因流动、交配能力以及宿主跳跃的可能性等方面的结果。我们还讨论了种群遗传学和基因组学在应对致毒真菌流行病学和疾病控制方面的实际挑战方面的有效但往往未得到充分利用的应用。
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引用次数: 0
Nasal microbiome dynamics: decoding the intricate nexus in the progression of respiratory and neurological diseases. 鼻腔微生物群动态:解码呼吸系统和神经系统疾病进展中错综复杂的关系。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-19 DOI: 10.1080/1040841X.2024.2391488
Keerti Maheshwari, Rashi Gupta, Ruchika Sharma, Amanpreet Kaur, Atul Vashist, Geeta Aggarwal

In recent times, the nasal region has emerged as a distinctive and dynamic environment where a myriad of microbial communities establish residence from infancy, persisting as both commensal and opportunistic pathogens throughout the lifespan. Understanding the coexistence of microorganisms in respiratory mucosal layers, their potential for infections, and the underlying molecular mechanisms shaping these interactions is crucial for developing efficient diagnostic and therapeutic interventions against respiratory and neurodegenerative diseases. Despite significant strides in understanding the olfactory system's nexus with nasal microbiota, comprehensive correlations with neurological diseases still need to be discovered. The nasal microbiome, a sentinel in immune defense, orchestrates a delicate equilibrium that, when disrupted, can precipitate severe respiratory infections, including Chronic Rhinosinusitis, Chronic obstructive pulmonary disorder (COPD), and Asthma, and instigate a cascade effect on central nervous system diseases such as Alzheimer's disease (AD), Parkinson's disease (PD), and Multiple sclerosis (MS). This review aims to redress this imbalance by meticulously exploring the anatomical and microbiological nuances of the nasal mucosal surface in health and disease. By delineating the molecular intricacies of these interactions, this review unravels the molecular mechanisms that govern the intricate nexus between nasal microbiota dysbiosis, olfactory dysfunction, and the progression of respiratory and neurological diseases.

近来,鼻腔区域已成为一个独特而动态的环境,无数微生物群落从婴儿期就在此定居,并在人的一生中作为共生和机会性病原体持续存在。了解呼吸道粘膜层中微生物的共存、它们的感染潜力以及形成这些相互作用的潜在分子机制,对于开发针对呼吸道和神经退行性疾病的高效诊断和治疗干预措施至关重要。尽管在了解嗅觉系统与鼻腔微生物群的关系方面取得了重大进展,但与神经系统疾病的全面相关性仍有待发现。鼻腔微生物群是免疫防御的哨兵,它协调着一种微妙的平衡,一旦被破坏,就会引发严重的呼吸道感染,包括慢性鼻炎、慢性阻塞性肺疾病(COPD)和哮喘,并对阿尔茨海默病(AD)、帕金森病(PD)和多发性硬化症(MS)等中枢神经系统疾病产生连锁效应。本综述旨在通过细致探索健康和疾病中鼻粘膜表面的解剖学和微生物学细微差别,纠正这种不平衡现象。通过描述这些相互作用的分子复杂性,本综述揭示了鼻腔微生物群失调、嗅觉功能障碍以及呼吸系统和神经系统疾病进展之间错综复杂关系的分子机制。
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引用次数: 0
Selective pressures for public antibiotic resistance. 公共抗生素耐药性的选择性压力。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-19 DOI: 10.1080/1040841X.2024.2367666
Pauline Brepoels, Gitta De Wit, Bram Lories, Tom E R Belpaire, Hans P Steenackers

The rapid increase of antibiotic-resistant pathogens is severely limiting our current treatment possibilities. An important subset of the resistance mechanisms conferring antibiotic resistance have public effects, allowing otherwise susceptible bacteria to also survive antibiotic treatment. As susceptible bacteria can survive treatment without bearing the metabolic cost of producing the resistance mechanism, there is potential to increase their relative frequency in the population and, as such, select against resistant bacteria. Multiple studies showed that this altered selection for resistance is dependent on various environmental and treatment parameters. In this review, we provide a comprehensive overview of their most important findings and describe the main factors impacting the selection for resistance. In-depth understanding of the driving forces behind selection can aid in the design and implementation of alternative treatments which limit the risk of resistance development.

抗生素耐药性病原体的迅速增加严重限制了我们目前的治疗可能性。赋予抗生素耐药性的耐药机制中有一个重要的子集具有公共效应,使原本易感的细菌也能在抗生素治疗中存活下来。由于易感细菌无需承担产生抗药性机制的代谢成本就能在治疗中存活下来,因此有可能增加它们在群体中的相对频率,从而选择性地抑制抗药性细菌。多项研究表明,耐药性选择的改变取决于各种环境和治疗参数。在本综述中,我们将全面概述这些研究的最重要发现,并描述影响耐药性选择的主要因素。深入了解选择背后的驱动力有助于设计和实施可限制抗药性产生风险的替代治疗方法。
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引用次数: 0
Peptide-based strategies for overcoming biofilm-associated infections: a comprehensive review. 基于肽的生物膜相关感染防治策略:全面综述。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-14 DOI: 10.1080/1040841X.2024.2390597
T Manobala

Biofilms represent resilient microbial communities responsible for inducing chronic infections in human subjects. Given the escalating challenges associated with antibiotic therapy failures in clinical infections linked to biofilm formation, a peptide-based approach emerges as a promising alternative to effectively combat these notoriously resistant biofilms. Contrary to conventional antimicrobial peptides, which predominantly target cellular membranes, antibiofilm peptides necessitate a multifaceted approach, addressing various "biofilm-specific factors." These factors encompass Extracellular Polymeric Substance (EPS) degradation, membrane targeting, cell signaling, and regulatory mechanisms. Recent research endeavors have been directed toward assessing the potential of peptides as potent antibiofilm agents. However, to translate these peptides into viable clinical applications, several critical considerations must be meticulously evaluated during the peptide design process. This review serves to furnish an all-encompassing summary of the pivotal factors and parameters that necessitate contemplation for the successful development of an efficacious antibiofilm peptide.

生物膜是一种具有顽强生命力的微生物群落,可诱发人体慢性感染。鉴于临床感染中与生物膜形成有关的抗生素治疗失败所带来的挑战不断升级,一种基于肽的方法成为有效对抗这些臭名昭著的耐药性生物膜的有前途的替代方法。与主要针对细胞膜的传统抗菌肽不同,抗生物膜肽需要采取多方面的方法,解决各种 "生物膜特异性因素"。这些因素包括胞外聚合物(EPS)降解、膜靶向、细胞信号传导和调节机制。最近的研究致力于评估肽作为强效抗生物膜剂的潜力。然而,要将这些多肽转化为可行的临床应用,在多肽设计过程中必须对几个关键因素进行细致评估。本综述全面总结了成功开发有效抗生物膜肽所需考虑的关键因素和参数。
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引用次数: 0
Current research progress on Prevotella intermedia and associated diseases. 目前对中间普雷沃茨菌和相关疾病的研究进展。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-14 DOI: 10.1080/1040841X.2024.2390594
Shuyang Zhang, Yuheng Zhao, Jonathan Lalsiamthara, Yan Peng, Linlong Qi, Shuli Deng, Qingjing Wang

Prevotella intermedia is a Gram-negative anaerobic bacterium that is a common pathogen of periodontitis. Recent studies have revealed that P. intermedia is closely associated with a variety of diseases involving multiple systems. Under the action of its virulence factors such as cysteine protease and adhesins, P. intermedia has the ability to bind and invade various host cells including gingival fibroblasts. It can also copolymerize a variety of pathogenic bacteria, leading to interference with the host's immune inflammatory response and causing various diseases. In this article, we review the progress of research on P. intermedia virulence factors and bacterial pathogenesis, and the correlation between P. intermedia and various diseases.

中间普氏菌是一种革兰氏阴性厌氧菌,是牙周炎的常见病原体。最新研究发现,中间普雷沃氏菌与涉及多个系统的多种疾病密切相关。在半胱氨酸蛋白酶和粘附素等毒力因子的作用下,中间念珠菌能够与包括牙龈成纤维细胞在内的多种宿主细胞结合并侵入。它还能与多种致病菌共聚,导致宿主的免疫炎症反应受到干扰,引发各种疾病。本文回顾了中间念珠菌毒力因子和细菌致病机理的研究进展,以及中间念珠菌与各种疾病的相关性。
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引用次数: 0
Competitive dynamics and balance between Streptococcus mutans and commensal streptococci in oral microecology. 口腔微生态中变异链球菌和共生链球菌之间的竞争动态和平衡。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-12 DOI: 10.1080/1040841X.2024.2389386
Dingwei Ye, Yaqi Liu, Jing Li, Jing Zhou, Jingwei Cao, Yumeng Wu, Xinyue Wang, Yuwen Fang, Xingchen Ye, Jing Zou, Qizhao Ma

Dental caries, as a biofilm-related disease, is closely linked to dysbiosis in microbial ecology within dental biofilms. Beyond its impact on oral health, bacteria within the oral cavity pose systemic health risks by potentially entering the bloodstream, thereby increasing susceptibility to bacterial endocarditis, among other related diseases. Streptococcus mutans, a principal cariogenic bacterium, possesses virulence factors crucial to the pathogenesis of dental caries. Its ability to adhere to tooth surfaces, produce glucans for biofilm formation, and metabolize sugars into lactic acid contributes to enamel demineralization and the initiation of carious lesions. Its aciduricity and ability to produce bacteriocins enable a competitive advantage, allowing it to thrive in acidic environments and dominate in changing oral microenvironments. In contrast, commensal streptococci, such as Streptococcus sanguinis, Streptococcus gordonii, and Streptococcus salivarius, act as primary colonizers and compete with S. mutans for adherence sites and nutrients during biofilm formation. This competition involves the production of alkali, peroxides, and antibacterial substances, thereby inhibiting S. mutans growth and maintaining microbial balance. This dynamic interaction influences the balance of oral microbiota, with disruptions leading to shifts in microbial composition that are marked by rapid increases in S. mutans abundance, contributing to the onset of dental caries. Thus, understanding the dynamic interactions between commensal and pathogenic bacteria in oral microecology is important for developing effective strategies to promote oral health and prevent dental caries. This review highlights the roles and competitive interactions of commensal bacteria and S. mutans in oral microecology, emphasizing the importance of maintaining oral microbial balance for health, and discusses the pathological implications of perturbations in this balance.

龋齿作为一种与生物膜相关的疾病,与牙齿生物膜内微生物生态失调密切相关。除了对口腔健康的影响,口腔内的细菌还可能进入血液,从而增加患细菌性心内膜炎和其他相关疾病的风险。变异链球菌是一种主要的致龋细菌,具有对龋齿发病至关重要的毒力因子。它能粘附在牙齿表面,产生葡聚糖形成生物膜,并将糖代谢成乳酸,这有助于釉质脱矿和龋病的发生。它的酸性和产生细菌素的能力使其具有竞争优势,能够在酸性环境中生长,并在不断变化的口腔微环境中占据主导地位。相比之下,共生链球菌,如血清链球菌、戈登链球菌和唾液链球菌,则是主要的定殖者,在生物膜形成过程中与变异棒状杆菌竞争附着点和营养物质。这种竞争包括产生碱、过氧化物和抗菌物质,从而抑制变异杆菌的生长,维持微生物平衡。这种动态的相互作用影响着口腔微生物群的平衡,一旦发生破坏,微生物的组成就会发生变化,变异杆菌的数量就会迅速增加,从而导致龋齿的发生。因此,了解口腔微生态中共生菌和致病菌之间的动态相互作用对于制定促进口腔健康和预防龋齿的有效策略非常重要。本综述强调了共生菌和变异杆菌在口腔微生态中的作用和竞争性相互作用,强调了维持口腔微生物平衡对健康的重要性,并讨论了这种平衡紊乱对病理的影响。
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引用次数: 0
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