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Insights into the molecular mechanisms of H. pylori-associated B-cell lymphoma. 幽门螺杆菌相关 B 细胞淋巴瘤分子机制透视。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-01-30 DOI: 10.1080/1040841X.2024.2305439
Kritika Malik, Prashant Kodgire

Cancer research has extensively explored various factors contributing to cancer development, including chemicals, drugs, smoking, and obesity. However, the role of bacterial infections in cancer induction remains underexplored. In particular, the mechanisms underlying H. pylori-induced B-cell lymphoma, a potential consequence of bacterial infection, have received little attention. In recent years, there has been speculation about contagious agents causing persistent inflammation and encouraging B-lymphocyte transition along with lymphomagenesis. MALT lymphoma associated with chronic H. pylori infection, apart from two other central associated lymphomas - Burkitt's Lymphoma and DLBCL, is well studied. Owing to the increasing colonization of H. pylori in the host gut and its possible action in the development of B-cell lymphoma, this review aims to summarize the existing reports on different B-cell lymphomas' probable association with H. pylori infections; also emphasizing the function of the organism in lymphomagenesis; including its interaction with the host, pathogen and host-specific factors, and tumor microenvironment.

癌症研究已经广泛探讨了导致癌症发生的各种因素,包括化学物质、药物、吸烟和肥胖。然而,细菌感染在癌症诱导中的作用仍未得到充分探索。尤其是幽门螺杆菌诱发 B 细胞淋巴瘤(细菌感染的潜在后果)的机制很少受到关注。近年来,人们一直在猜测传染性病原体会导致持续性炎症,并在诱发淋巴瘤的同时促使 B 淋巴细胞转化。与慢性幽门螺杆菌感染相关的 MALT 淋巴瘤,除了另外两种中心相关淋巴瘤--Burkitt 淋巴瘤和 DLBCL 外,研究得比较清楚。由于幽门螺杆菌在宿主肠道中的定植率越来越高,而且它可能对B细胞淋巴瘤的发展产生作用,本综述旨在总结现有关于不同B细胞淋巴瘤可能与幽门螺杆菌感染有关的报道,同时强调幽门螺杆菌在淋巴瘤发生过程中的功能,包括它与宿主、病原体和宿主特异性因素以及肿瘤微环境之间的相互作用。
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引用次数: 0
New insights into mycotoxin risk management through fungal population genetics and genomics. 通过真菌群体遗传学和基因组学对霉菌毒素风险管理的新认识。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-26 DOI: 10.1080/1040841X.2024.2392179
Toan Bao Hung Nguyen, Marie Foulongne-Oriol, Jean-Luc Jany, Gaétan le Floch, Adeline Picot

Mycotoxin contamination of food and feed is a major global concern. Chronic or acute dietary exposure to contaminated food and feed can negatively affect both human and animal health. Contamination occurs through plant infection by toxigenic fungi, primarily Aspergillus and Fusarium spp., either before or after harvest. Despite the application of various management strategies, controlling these pathogens remains a major challenge primarily because of their ability to adapt to environmental changes and selection pressures. Understanding the genetic structure of plant pathogen populations is pivotal for gaining new insights into their biology and epidemiology, as well as for understanding the mechanisms behind their adaptability. Such deeper understanding is crucial for developing effective and preemptive management strategies tailored to the evolving nature of pathogenic populations. This review focuses on the population-level variations within the two most economically significant toxigenic fungal genera according to space, host, and pathogenicity. Outcomes in terms of migration patterns, gene flow within populations, mating abilities, and the potential for host jumps are examined. We also discuss effective yet often underutilized applications of population genetics and genomics to address practical challenges in the epidemiology and disease control of toxigenic fungi.

食品和饲料中的霉菌毒素污染是全球关注的一个主要问题。长期或急性食用受污染的食品和饲料会对人类和动物的健康产生负面影响。植物在收获前或收获后受到致毒真菌(主要是曲霉菌属和镰刀菌属)的感染,就会产生污染。尽管采用了各种管理策略,但控制这些病原体仍然是一项重大挑战,这主要是因为它们具有适应环境变化和选择压力的能力。了解植物病原体种群的遗传结构对于深入了解其生物学和流行病学以及了解其适应性背后的机制至关重要。这种更深入的了解对于针对病原体种群不断变化的特性制定有效和先发制人的管理策略至关重要。本综述重点关注两个最具经济意义的致毒真菌属在空间、宿主和致病性方面的种群水平变化。我们研究了迁移模式、种群内的基因流动、交配能力以及宿主跳跃的可能性等方面的结果。我们还讨论了种群遗传学和基因组学在应对致毒真菌流行病学和疾病控制方面的实际挑战方面的有效但往往未得到充分利用的应用。
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引用次数: 0
Nasal microbiome dynamics: decoding the intricate nexus in the progression of respiratory and neurological diseases. 鼻腔微生物群动态:解码呼吸系统和神经系统疾病进展中错综复杂的关系。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-19 DOI: 10.1080/1040841X.2024.2391488
Keerti Maheshwari, Rashi Gupta, Ruchika Sharma, Amanpreet Kaur, Atul Vashist, Geeta Aggarwal

In recent times, the nasal region has emerged as a distinctive and dynamic environment where a myriad of microbial communities establish residence from infancy, persisting as both commensal and opportunistic pathogens throughout the lifespan. Understanding the coexistence of microorganisms in respiratory mucosal layers, their potential for infections, and the underlying molecular mechanisms shaping these interactions is crucial for developing efficient diagnostic and therapeutic interventions against respiratory and neurodegenerative diseases. Despite significant strides in understanding the olfactory system's nexus with nasal microbiota, comprehensive correlations with neurological diseases still need to be discovered. The nasal microbiome, a sentinel in immune defense, orchestrates a delicate equilibrium that, when disrupted, can precipitate severe respiratory infections, including Chronic Rhinosinusitis, Chronic obstructive pulmonary disorder (COPD), and Asthma, and instigate a cascade effect on central nervous system diseases such as Alzheimer's disease (AD), Parkinson's disease (PD), and Multiple sclerosis (MS). This review aims to redress this imbalance by meticulously exploring the anatomical and microbiological nuances of the nasal mucosal surface in health and disease. By delineating the molecular intricacies of these interactions, this review unravels the molecular mechanisms that govern the intricate nexus between nasal microbiota dysbiosis, olfactory dysfunction, and the progression of respiratory and neurological diseases.

近来,鼻腔区域已成为一个独特而动态的环境,无数微生物群落从婴儿期就在此定居,并在人的一生中作为共生和机会性病原体持续存在。了解呼吸道粘膜层中微生物的共存、它们的感染潜力以及形成这些相互作用的潜在分子机制,对于开发针对呼吸道和神经退行性疾病的高效诊断和治疗干预措施至关重要。尽管在了解嗅觉系统与鼻腔微生物群的关系方面取得了重大进展,但与神经系统疾病的全面相关性仍有待发现。鼻腔微生物群是免疫防御的哨兵,它协调着一种微妙的平衡,一旦被破坏,就会引发严重的呼吸道感染,包括慢性鼻炎、慢性阻塞性肺疾病(COPD)和哮喘,并对阿尔茨海默病(AD)、帕金森病(PD)和多发性硬化症(MS)等中枢神经系统疾病产生连锁效应。本综述旨在通过细致探索健康和疾病中鼻粘膜表面的解剖学和微生物学细微差别,纠正这种不平衡现象。通过描述这些相互作用的分子复杂性,本综述揭示了鼻腔微生物群失调、嗅觉功能障碍以及呼吸系统和神经系统疾病进展之间错综复杂关系的分子机制。
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引用次数: 0
Selective pressures for public antibiotic resistance. 公共抗生素耐药性的选择性压力。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-19 DOI: 10.1080/1040841X.2024.2367666
Pauline Brepoels, Gitta De Wit, Bram Lories, Tom E R Belpaire, Hans P Steenackers

The rapid increase of antibiotic-resistant pathogens is severely limiting our current treatment possibilities. An important subset of the resistance mechanisms conferring antibiotic resistance have public effects, allowing otherwise susceptible bacteria to also survive antibiotic treatment. As susceptible bacteria can survive treatment without bearing the metabolic cost of producing the resistance mechanism, there is potential to increase their relative frequency in the population and, as such, select against resistant bacteria. Multiple studies showed that this altered selection for resistance is dependent on various environmental and treatment parameters. In this review, we provide a comprehensive overview of their most important findings and describe the main factors impacting the selection for resistance. In-depth understanding of the driving forces behind selection can aid in the design and implementation of alternative treatments which limit the risk of resistance development.

抗生素耐药性病原体的迅速增加严重限制了我们目前的治疗可能性。赋予抗生素耐药性的耐药机制中有一个重要的子集具有公共效应,使原本易感的细菌也能在抗生素治疗中存活下来。由于易感细菌无需承担产生抗药性机制的代谢成本就能在治疗中存活下来,因此有可能增加它们在群体中的相对频率,从而选择性地抑制抗药性细菌。多项研究表明,耐药性选择的改变取决于各种环境和治疗参数。在本综述中,我们将全面概述这些研究的最重要发现,并描述影响耐药性选择的主要因素。深入了解选择背后的驱动力有助于设计和实施可限制抗药性产生风险的替代治疗方法。
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引用次数: 0
Peptide-based strategies for overcoming biofilm-associated infections: a comprehensive review. 基于肽的生物膜相关感染防治策略:全面综述。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-14 DOI: 10.1080/1040841X.2024.2390597
T Manobala

Biofilms represent resilient microbial communities responsible for inducing chronic infections in human subjects. Given the escalating challenges associated with antibiotic therapy failures in clinical infections linked to biofilm formation, a peptide-based approach emerges as a promising alternative to effectively combat these notoriously resistant biofilms. Contrary to conventional antimicrobial peptides, which predominantly target cellular membranes, antibiofilm peptides necessitate a multifaceted approach, addressing various "biofilm-specific factors." These factors encompass Extracellular Polymeric Substance (EPS) degradation, membrane targeting, cell signaling, and regulatory mechanisms. Recent research endeavors have been directed toward assessing the potential of peptides as potent antibiofilm agents. However, to translate these peptides into viable clinical applications, several critical considerations must be meticulously evaluated during the peptide design process. This review serves to furnish an all-encompassing summary of the pivotal factors and parameters that necessitate contemplation for the successful development of an efficacious antibiofilm peptide.

生物膜是一种具有顽强生命力的微生物群落,可诱发人体慢性感染。鉴于临床感染中与生物膜形成有关的抗生素治疗失败所带来的挑战不断升级,一种基于肽的方法成为有效对抗这些臭名昭著的耐药性生物膜的有前途的替代方法。与主要针对细胞膜的传统抗菌肽不同,抗生物膜肽需要采取多方面的方法,解决各种 "生物膜特异性因素"。这些因素包括胞外聚合物(EPS)降解、膜靶向、细胞信号传导和调节机制。最近的研究致力于评估肽作为强效抗生物膜剂的潜力。然而,要将这些多肽转化为可行的临床应用,在多肽设计过程中必须对几个关键因素进行细致评估。本综述全面总结了成功开发有效抗生物膜肽所需考虑的关键因素和参数。
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引用次数: 0
Current research progress on Prevotella intermedia and associated diseases. 目前对中间普雷沃茨菌和相关疾病的研究进展。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-14 DOI: 10.1080/1040841X.2024.2390594
Shuyang Zhang, Yuheng Zhao, Jonathan Lalsiamthara, Yan Peng, Linlong Qi, Shuli Deng, Qingjing Wang

Prevotella intermedia is a Gram-negative anaerobic bacterium that is a common pathogen of periodontitis. Recent studies have revealed that P. intermedia is closely associated with a variety of diseases involving multiple systems. Under the action of its virulence factors such as cysteine protease and adhesins, P. intermedia has the ability to bind and invade various host cells including gingival fibroblasts. It can also copolymerize a variety of pathogenic bacteria, leading to interference with the host's immune inflammatory response and causing various diseases. In this article, we review the progress of research on P. intermedia virulence factors and bacterial pathogenesis, and the correlation between P. intermedia and various diseases.

中间普氏菌是一种革兰氏阴性厌氧菌,是牙周炎的常见病原体。最新研究发现,中间普雷沃氏菌与涉及多个系统的多种疾病密切相关。在半胱氨酸蛋白酶和粘附素等毒力因子的作用下,中间念珠菌能够与包括牙龈成纤维细胞在内的多种宿主细胞结合并侵入。它还能与多种致病菌共聚,导致宿主的免疫炎症反应受到干扰,引发各种疾病。本文回顾了中间念珠菌毒力因子和细菌致病机理的研究进展,以及中间念珠菌与各种疾病的相关性。
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引用次数: 0
Competitive dynamics and balance between Streptococcus mutans and commensal streptococci in oral microecology. 口腔微生态中变异链球菌和共生链球菌之间的竞争动态和平衡。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-12 DOI: 10.1080/1040841X.2024.2389386
Dingwei Ye, Yaqi Liu, Jing Li, Jing Zhou, Jingwei Cao, Yumeng Wu, Xinyue Wang, Yuwen Fang, Xingchen Ye, Jing Zou, Qizhao Ma

Dental caries, as a biofilm-related disease, is closely linked to dysbiosis in microbial ecology within dental biofilms. Beyond its impact on oral health, bacteria within the oral cavity pose systemic health risks by potentially entering the bloodstream, thereby increasing susceptibility to bacterial endocarditis, among other related diseases. Streptococcus mutans, a principal cariogenic bacterium, possesses virulence factors crucial to the pathogenesis of dental caries. Its ability to adhere to tooth surfaces, produce glucans for biofilm formation, and metabolize sugars into lactic acid contributes to enamel demineralization and the initiation of carious lesions. Its aciduricity and ability to produce bacteriocins enable a competitive advantage, allowing it to thrive in acidic environments and dominate in changing oral microenvironments. In contrast, commensal streptococci, such as Streptococcus sanguinis, Streptococcus gordonii, and Streptococcus salivarius, act as primary colonizers and compete with S. mutans for adherence sites and nutrients during biofilm formation. This competition involves the production of alkali, peroxides, and antibacterial substances, thereby inhibiting S. mutans growth and maintaining microbial balance. This dynamic interaction influences the balance of oral microbiota, with disruptions leading to shifts in microbial composition that are marked by rapid increases in S. mutans abundance, contributing to the onset of dental caries. Thus, understanding the dynamic interactions between commensal and pathogenic bacteria in oral microecology is important for developing effective strategies to promote oral health and prevent dental caries. This review highlights the roles and competitive interactions of commensal bacteria and S. mutans in oral microecology, emphasizing the importance of maintaining oral microbial balance for health, and discusses the pathological implications of perturbations in this balance.

龋齿作为一种与生物膜相关的疾病,与牙齿生物膜内微生物生态失调密切相关。除了对口腔健康的影响,口腔内的细菌还可能进入血液,从而增加患细菌性心内膜炎和其他相关疾病的风险。变异链球菌是一种主要的致龋细菌,具有对龋齿发病至关重要的毒力因子。它能粘附在牙齿表面,产生葡聚糖形成生物膜,并将糖代谢成乳酸,这有助于釉质脱矿和龋病的发生。它的酸性和产生细菌素的能力使其具有竞争优势,能够在酸性环境中生长,并在不断变化的口腔微环境中占据主导地位。相比之下,共生链球菌,如血清链球菌、戈登链球菌和唾液链球菌,则是主要的定殖者,在生物膜形成过程中与变异棒状杆菌竞争附着点和营养物质。这种竞争包括产生碱、过氧化物和抗菌物质,从而抑制变异杆菌的生长,维持微生物平衡。这种动态的相互作用影响着口腔微生物群的平衡,一旦发生破坏,微生物的组成就会发生变化,变异杆菌的数量就会迅速增加,从而导致龋齿的发生。因此,了解口腔微生态中共生菌和致病菌之间的动态相互作用对于制定促进口腔健康和预防龋齿的有效策略非常重要。本综述强调了共生菌和变异杆菌在口腔微生态中的作用和竞争性相互作用,强调了维持口腔微生物平衡对健康的重要性,并讨论了这种平衡紊乱对病理的影响。
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引用次数: 0
Oral host-microbe interactions investigated in 3D organotypic models. 在三维有机模型中研究口腔宿主与微生物的相互作用。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-01 Epub Date: 2023-05-11 DOI: 10.1080/1040841X.2023.2211665
Lin Shang, Dongmei Deng, Bastiaan P Krom, Susan Gibbs

The oral cavity is inhabited by abundant microbes which continuously interact with the host and influence the host's health. Such host-microbe interactions (HMI) are dynamic and complex processes involving e.g. oral tissues, microbial communities and saliva. Due to difficulties in mimicking the in vivo complexity, it is still unclear how exactly HMI influence the transition between healthy status and disease conditions in the oral cavity. As an advanced approach, three-dimensional (3D) organotypic oral tissues (epithelium and mucosa/gingiva) are being increasingly used to study underlying mechanisms. These in vitro models were designed with different complexity depending on the research questions to be answered. In this review, we summarised the existing 3D oral HMI models, comparing designs and readouts, discussing applications as well as future perspectives.

口腔中栖息着大量微生物,它们不断与宿主发生相互作用,影响宿主的健康。这种宿主与微生物的相互作用(HMI)是一个动态的复杂过程,涉及口腔组织、微生物群落和唾液等。由于难以模拟体内的复杂性,目前还不清楚宿主与微生物之间的相互作用究竟如何影响口腔内健康状态与疾病状态之间的转变。作为一种先进的方法,三维(3D)有机口腔组织(上皮和粘膜/龈)正被越来越多地用于研究其潜在机制。根据需要回答的研究问题,这些体外模型的设计有不同的复杂程度。在这篇综述中,我们总结了现有的三维口腔人机界面模型,比较了设计和读数,讨论了应用和未来前景。
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引用次数: 0
Applications of the phage display technology in molecular biology, biotechnology and medicine. 噬菌体展示技术在分子生物学、生物技术和医学中的应用。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-01 Epub Date: 2023-06-04 DOI: 10.1080/1040841X.2023.2219741
Karolina Pierzynowska, Joanna Morcinek-Orłowska, Lidia Gaffke, Weronika Jaroszewicz, Piotr M Skowron, Grzegorz Węgrzyn

The phage display technology is based on the presentation of peptide sequences on the surface of virions of bacteriophages. Its development led to creation of sophisticated systems based on the possibility of the presentation of a huge variability of peptides, attached to one of proteins of bacteriophage capsids. The use of such systems allowed for achieving enormous advantages in the processes of selection of bioactive molecules. In fact, the phage display technology has been employed in numerous fields of biotechnology, as diverse as immunological and biomedical applications (in both diagnostics and therapy), the formation of novel materials, and many others. In this paper, contrary to many other review articles which were focussed on either specific display systems or the use of phage display in selected fields, we present a comprehensive overview of various possibilities of applications of this technology. We discuss an usefulness of the phage display technology in various fields of science, medicine and the broad sense of biotechnology. This overview indicates the spread and importance of applications of microbial systems (exemplified by the phage display technology), pointing to the possibility of developing such sophisticated tools when advanced molecular methods are used in microbiological studies, accompanied with understanding of details of structures and functions of microbial entities (bacteriophages in this case).

噬菌体展示技术的基础是在噬菌体病毒表面展示多肽序列。噬菌体展示技术的发展导致了复杂系统的诞生,这些系统可以展示附着在噬菌体外壳蛋白质之一上的各种多肽。使用这种系统可以在选择生物活性分子的过程中获得巨大优势。事实上,噬菌体展示技术已被应用于众多生物技术领域,如免疫学和生物医学应用(诊断和治疗)、新型材料的形成等。在本文中,与许多其他评论文章专注于特定显示系统或噬菌体显示技术在选定领域的应用不同,我们对该技术的各种应用可能性进行了全面概述。我们讨论了噬菌体展示技术在科学、医学和广义生物技术等各个领域的用途。这一概述表明了微生物系统(以噬菌体展示技术为例)应用的广泛性和重要性,指出了在微生物研究中使用先进的分子方法,同时了解微生物实体(本例中为噬菌体)的结构和功能细节时,开发这种复杂工具的可能性。
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引用次数: 0
Evolutionary principles for modifying pathogen virulence. 改变病原体毒力的进化原理。
IF 6 2区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-01 Epub Date: 2023-05-05 DOI: 10.1080/1040841X.2023.2203766
Tom Fieldman

Current methods for combatting infectious diseases are largely limited to the prevention of infection, enhancing host immunity (via vaccination), and administration of small molecules to slow the growth of or kill pathogens (e.g. antimicrobials). Beyond efforts to deter the rise of antimicrobial resistance, little consideration is given to pathogen evolution. Natural selection will favor different levels of virulence under different circumstances. Experimental studies and a wealth of theoretical work have identified many likely evolutionary determinants of virulence. Some of these, such as transmission dynamics, are amenable to modification by clinicians and public health practitioners. In this article, we provide a conceptual overview of virulence, followed by an analysis of modifiable evolutionary determinants of virulence including vaccinations, antibiotics, and transmission dynamics. Finally, we discuss both the importance and limitations of taking an evolutionary approach to reducing pathogen virulence.

目前抗击传染病的方法主要局限于预防感染、增强宿主免疫力(通过疫苗接种)以及使用小分子药物减缓病原体的生长或杀死病原体(如抗菌药物)。除了努力阻止抗菌药耐药性的增加,人们很少考虑病原体的进化。在不同情况下,自然选择会倾向于不同程度的毒力。实验研究和大量理论工作已经确定了许多可能决定毒力进化的因素。其中一些因素,如传播动力学,可由临床医生和公共卫生从业人员加以改变。在本文中,我们首先从概念上概述了致病力,然后分析了可改变的致病力进化决定因素,包括疫苗接种、抗生素和传播动力学。最后,我们讨论了采用进化方法降低病原体毒力的重要性和局限性。
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引用次数: 0
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Critical Reviews in Microbiology
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