Burak İlhan, Şenol Ender, Berkay Kılıç, Muhammed Üçüncü, Murat Serilmez, Ceren Tilgen Yasasever, Hilal Oğuz Soydinç, Sibel Kuras, Bekir Erdoğan, Hani Alsaadoni, Hasan Karanlık, Süleyman Bademler
Despite advances in cancer treatment, breast cancer (BC) remains one of the most common cancers affecting women worldwide. This study aimed to determine serum circFBXW7, circABCB10, and circ0103552 levels and compare BC patients and healthy controls to investigate their roles in the molecular mechanism of BC and the significance of these circRNAs in BC diagnosis. The study group consisted of 92 patients with BC and 31 healthy controls. Total RNA was isolated from serum samples. Following total RNA, complementary DNA was synthesized from this material. Following complementary DNA analysis, the circRNA levels were analyzed by the qRT-PCR method. Expression levels were evaluated in ΔCt values. High ΔCt values of circFBXW7 and circ0103552 and low ΔCt values of circABCB10 were correlated with BC diagnosis (circFBXW7, p = 0.043, r = 0.183, circ0103552, p < 0.001, r = 0.321, circABCB10, p = 0.001, r = -0.291). According to Fold Change (FC) values, circFBXW7 (FC = 0.30) and circ0103552 (FC = 0.26) showed low expression in the patient group compared to the control group, while circABCB10 (FC = 11.09) showed high expression (p < 0.05, for all comparisons). We think that our study is one of the rare studies investigating the relationship between BC and serum circRNA levels. This study concludes that the significant downregulation of circFBXW7 and circ0103552 and the upregulation of circABCB10 are directly related to the diagnosis of BC and can be used for diagnosis, but further studies are needed to elucidate the molecular mechanism of the relationship between circRNAs and BC.
尽管癌症治疗取得了进步,但乳腺癌(BC)仍然是影响全球女性的最常见癌症之一。本研究旨在检测血清circFBXW7、circABCB10和circ0103552水平,并将BC患者与健康对照进行比较,探讨它们在BC分子机制中的作用,以及这些circrna在BC诊断中的意义。研究组由92名BC患者和31名健康对照者组成。从血清样品中分离总RNA。在总RNA之后,从该材料合成了互补DNA。在进行互补DNA分析后,采用qRT-PCR方法分析circRNA水平。以ΔCt值评价表达水平。circFBXW7和circ0103552的高ΔCt值和circABCB10的低ΔCt值与BC诊断相关(circFBXW7, p = 0.043, r = 0.183, circ0103552, p < 0.001, r = 0.321, circABCB10, p = 0.001, r = -0.291)。根据Fold Change (FC)值,circFBXW7 (FC = 0.30)和circ0103552 (FC = 0.26)在患者组中较对照组低表达,circABCB10 (FC = 11.09)高表达(p < 0.05)。我们认为我们的研究是研究BC和血清circRNA水平之间关系的罕见研究之一。本研究认为circFBXW7和circ0103552的显著下调以及circABCB10的上调与BC的诊断直接相关,可用于诊断,但circRNAs与BC关系的分子机制有待进一步研究阐明。
{"title":"The Diagnostic Value of circFBXW7, circABCB10, and circ0103552 Levels in Breast Cancer.","authors":"Burak İlhan, Şenol Ender, Berkay Kılıç, Muhammed Üçüncü, Murat Serilmez, Ceren Tilgen Yasasever, Hilal Oğuz Soydinç, Sibel Kuras, Bekir Erdoğan, Hani Alsaadoni, Hasan Karanlık, Süleyman Bademler","doi":"10.3390/cimb46120862","DOIUrl":"10.3390/cimb46120862","url":null,"abstract":"<p><p>Despite advances in cancer treatment, breast cancer (BC) remains one of the most common cancers affecting women worldwide. This study aimed to determine serum circFBXW7, circABCB10, and circ0103552 levels and compare BC patients and healthy controls to investigate their roles in the molecular mechanism of BC and the significance of these circRNAs in BC diagnosis. The study group consisted of 92 patients with BC and 31 healthy controls. Total RNA was isolated from serum samples. Following total RNA, complementary DNA was synthesized from this material. Following complementary DNA analysis, the circRNA levels were analyzed by the qRT-PCR method. Expression levels were evaluated in ΔCt values. High ΔCt values of circFBXW7 and circ0103552 and low ΔCt values of circABCB10 were correlated with BC diagnosis (circFBXW7, <i>p</i> = 0.043, r = 0.183, circ0103552, <i>p</i> < 0.001, r = 0.321, circABCB10, <i>p</i> = 0.001, r = -0.291). According to Fold Change (FC) values, circFBXW7 (FC = 0.30) and circ0103552 (FC = 0.26) showed low expression in the patient group compared to the control group, while circABCB10 (FC = 11.09) showed high expression (<i>p</i> < 0.05, for all comparisons). We think that our study is one of the rare studies investigating the relationship between BC and serum circRNA levels. This study concludes that the significant downregulation of circFBXW7 and circ0103552 and the upregulation of circABCB10 are directly related to the diagnosis of BC and can be used for diagnosis, but further studies are needed to elucidate the molecular mechanism of the relationship between circRNAs and BC.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14381-14393"},"PeriodicalIF":2.8,"publicationDate":"2024-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674701/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ludovica Gaiaschi, Maria Grazia Bottone, Fabrizio De Luca
Glioblastoma multiforme (GBM) is one of the most aggressive and difficult-to-treat brain tumors, with a poor prognosis due to its high resistance to conventional therapies. Current treatment options, including surgical resection, radiotherapy, and chemotherapy, have limited effectiveness in improving long-term survival. Despite the emergence of new therapies, monotherapy approaches have not shown significant improvements, highlighting the need for innovative therapeutic strategies. Combination therapies appear to be the most promising solution, as they target multiple molecular pathways involved in GBM progression. One area of growing interest is the incorporation of phytotherapy and micotherapy as complementary treatments, which offer potential benefits due to their anti-tumor, anti-inflammatory, and immunomodulatory properties. This review examines the current challenges in GBM treatment, discusses the potential of combination therapies, and highlights the promising role of phytotherapy and micotherapy as integrative therapeutic options for GBM management.
{"title":"Towards Effective Treatment of Glioblastoma: The Role of Combination Therapies and the Potential of Phytotherapy and Micotherapy.","authors":"Ludovica Gaiaschi, Maria Grazia Bottone, Fabrizio De Luca","doi":"10.3390/cimb46120859","DOIUrl":"10.3390/cimb46120859","url":null,"abstract":"<p><p>Glioblastoma multiforme (GBM) is one of the most aggressive and difficult-to-treat brain tumors, with a poor prognosis due to its high resistance to conventional therapies. Current treatment options, including surgical resection, radiotherapy, and chemotherapy, have limited effectiveness in improving long-term survival. Despite the emergence of new therapies, monotherapy approaches have not shown significant improvements, highlighting the need for innovative therapeutic strategies. Combination therapies appear to be the most promising solution, as they target multiple molecular pathways involved in GBM progression. One area of growing interest is the incorporation of phytotherapy and micotherapy as complementary treatments, which offer potential benefits due to their anti-tumor, anti-inflammatory, and immunomodulatory properties. This review examines the current challenges in GBM treatment, discusses the potential of combination therapies, and highlights the promising role of phytotherapy and micotherapy as integrative therapeutic options for GBM management.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14324-14350"},"PeriodicalIF":2.8,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674107/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Quantitative real-time PCR (qRT-PCR) is an essential tool for analyzing and selecting stable reference genes. In order to screen for suitable reference genes under high-temperature stress conditions in Arabidopsis, this study measured the relative expression levels of 17 candidate reference genes using qRT-PCR. Among these, four are traditional reference genes, while the remaining thirteen are candidate reference genes with no previous reports on their use as reference genes. The expression stability of the candidate reference gene expression was analyzed and evaluated using five methods: ΔCt, geNorm, NormFinder, BestKeeper, and RefFinder. The results indicated that the LHCB4.1 and LHCB5 genes displayed the highest stability in expression under high-temperature stress conditions. To verify the stability of the reference genes, we treated Arabidopsis with high-temperature stress, used the selected LHCB4.1 and LHCB5 as references, and analyzed the expression of the heat-responsive gene HSFA2 using qRT-PCR. The results showed that when LHCB4.1 and LHCB5 were used individually or in combination as reference genes, the relative expression of HSFA2 significantly increased and remained consistent under high-temperature treatment. This indicates that both LHCB4.1 and LHCB5 are suitable reference genes for qRT-PCR analysis in Arabidopsis exposed to high-temperature stress. The novel reference genes identified in this study will serve as a reliable reference standard for gene expression studies in Arabidopsis under high-temperature stress, thereby enhancing the accuracy and comparability of experimental data.
{"title":"Identification and Validation of qRT-PCR Reference Genes for Analyzing <i>Arabidopsis</i> Responses to High-Temperature Stress.","authors":"Siyu Chen, Qi Cai, Peipei Liu, Jingru Liu, Guanzhou Chen, Hanwei Yan, Han Zheng","doi":"10.3390/cimb46120857","DOIUrl":"10.3390/cimb46120857","url":null,"abstract":"<p><p>Quantitative real-time PCR (qRT-PCR) is an essential tool for analyzing and selecting stable reference genes. In order to screen for suitable reference genes under high-temperature stress conditions in <i>Arabidopsis</i>, this study measured the relative expression levels of 17 candidate reference genes using qRT-PCR. Among these, four are traditional reference genes, while the remaining thirteen are candidate reference genes with no previous reports on their use as reference genes. The expression stability of the candidate reference gene expression was analyzed and evaluated using five methods: ΔCt, geNorm, NormFinder, BestKeeper, and RefFinder. The results indicated that the <i>LHCB4.1</i> and <i>LHCB5</i> genes displayed the highest stability in expression under high-temperature stress conditions. To verify the stability of the reference genes, we treated <i>Arabidopsis</i> with high-temperature stress, used the selected <i>LHCB4.1</i> and <i>LHCB5</i> as references, and analyzed the expression of the heat-responsive gene <i>HSFA2</i> using qRT-PCR. The results showed that when <i>LHCB4.1</i> and <i>LHCB5</i> were used individually or in combination as reference genes, the relative expression of <i>HSFA2</i> significantly increased and remained consistent under high-temperature treatment. This indicates that both <i>LHCB4.1</i> and <i>LHCB5</i> are suitable reference genes for qRT-PCR analysis in <i>Arabidopsis</i> exposed to high-temperature stress. The novel reference genes identified in this study will serve as a reliable reference standard for gene expression studies in <i>Arabidopsis</i> under high-temperature stress, thereby enhancing the accuracy and comparability of experimental data.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14304-14320"},"PeriodicalIF":2.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674290/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hepatitis, a significant medical concern owing to its potential to cause acute and chronic liver disease, necessitates early intervention. In this study, we aimed to elucidate the histopathological features of lipopolysaccharide-induced hepatitis in mice, focusing on tissue alterations. The results demonstrated that hepatocytes exhibited decreased eosin staining, indicating cellular shrinkage, whereas sinusoids were swollen with blood cells. Detailed electron microscope analysis identified these blood cells as leukocytes and erythrocytes, which confirmed a thrombus formation within the liver. Pre-treatment with aspirin significantly attenuated these pathological changes, including reductions in inflammatory markers such as C-reactive protein, interleukin-1β, and tumor necrosis factor-alpha. These findings highlight aspirin's anti-inflammatory and antiplatelet effects in mitigating liver inflammation and thrombus formation. In this study, we highlighted the potential of aspirin as a therapeutic agent for liver inflammation, in addition to providing insights into hepatocyte alterations and sinusoidal blood cell aggregation in liver inflammation. Aspirin, through the protection of endothelial cells and reduction of cytokine levels, may have broader applications in managing liver disease and other systemic inflammatory conditions. This emphasizes its value in prevention and therapy.
{"title":"Histopathological Analysis of Lipopolysaccharide-Induced Liver Inflammation and Thrombus Formation in Mice: The Protective Effects of Aspirin.","authors":"Hayate Saitoh, Miina Sakaguchi, Fumito Miruno, Naoto Muramatsu, Nozomi Ito, Kanako Tadokoro, Kiyoharu Kawakami, Kazuhiko Nakadate","doi":"10.3390/cimb46120856","DOIUrl":"10.3390/cimb46120856","url":null,"abstract":"<p><p>Hepatitis, a significant medical concern owing to its potential to cause acute and chronic liver disease, necessitates early intervention. In this study, we aimed to elucidate the histopathological features of lipopolysaccharide-induced hepatitis in mice, focusing on tissue alterations. The results demonstrated that hepatocytes exhibited decreased eosin staining, indicating cellular shrinkage, whereas sinusoids were swollen with blood cells. Detailed electron microscope analysis identified these blood cells as leukocytes and erythrocytes, which confirmed a thrombus formation within the liver. Pre-treatment with aspirin significantly attenuated these pathological changes, including reductions in inflammatory markers such as C-reactive protein, interleukin-1β, and tumor necrosis factor-alpha. These findings highlight aspirin's anti-inflammatory and antiplatelet effects in mitigating liver inflammation and thrombus formation. In this study, we highlighted the potential of aspirin as a therapeutic agent for liver inflammation, in addition to providing insights into hepatocyte alterations and sinusoidal blood cell aggregation in liver inflammation. Aspirin, through the protection of endothelial cells and reduction of cytokine levels, may have broader applications in managing liver disease and other systemic inflammatory conditions. This emphasizes its value in prevention and therapy.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14291-14303"},"PeriodicalIF":2.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674652/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cristin Allmang, Piret Hussar, Ilmārs Dūrītis, Florina Popovska-Percinic
The kidney plays an essential role in the proper homeostasis of glucose. In the kidney, glucose transport is carried out across cell membranes by two families of glucose transporters-facilitated diffusion glucose transporters (GLUTs) and Na(+)-dependent glucose co-transporters (SGLT family). Among the transporters, sodium-dependent glucose co-transporters play a major role in the kidney's ability to reabsorb glucose. Although the localization of glucose transporters has been extensively studied in mammals, there are still knowledge gaps regarding the localization of SGLTs in birds. The aim of this research was to conduct a comparative study of the immunolocalization of the sodium-dependent glucose co-transporters SGLT1 and SGLT2 in the kidneys of healthy and T-2-mycotoxicated chickens. Immunohistochemical staining was carried out using the polyclonal primary antibodies SGLT1 and SGLT2 (Abcam, UK) in kidney tissue derived from seven healthy and seven T-2-mycotoxicated 7-day-old female layer-type Ross chickens (Gallus gallus domesticus). The sections were stained using an immunohistochemistry kit (Abcam, UK). In the kidneys of the healthy birds, strong staining of SGLT1 and SGLT2 was observed in the cytoplasm of the epithelial cells of the proximal straight and convoluted tubules. In the kidneys of the birds of the T-2 toxin group, weak expression of SGLT1 and SGLT2 with morphological changes occurred, indicating reduced glucose transport in the urinary system during T-2 mycotoxicosis.
{"title":"Immunolocalization of Na(+)-Dependent Glucose Co-Transporters in Chicken Kidneys in Norm and During T-2 Mycotoxicosis (Primary Study).","authors":"Cristin Allmang, Piret Hussar, Ilmārs Dūrītis, Florina Popovska-Percinic","doi":"10.3390/cimb46120854","DOIUrl":"10.3390/cimb46120854","url":null,"abstract":"<p><p>The kidney plays an essential role in the proper homeostasis of glucose. In the kidney, glucose transport is carried out across cell membranes by two families of glucose transporters-facilitated diffusion glucose transporters (GLUTs) and Na(+)-dependent glucose co-transporters (SGLT family). Among the transporters, sodium-dependent glucose co-transporters play a major role in the kidney's ability to reabsorb glucose. Although the localization of glucose transporters has been extensively studied in mammals, there are still knowledge gaps regarding the localization of SGLTs in birds. The aim of this research was to conduct a comparative study of the immunolocalization of the sodium-dependent glucose co-transporters SGLT1 and SGLT2 in the kidneys of healthy and T-2-mycotoxicated chickens. Immunohistochemical staining was carried out using the polyclonal primary antibodies SGLT1 and SGLT2 (Abcam, UK) in kidney tissue derived from seven healthy and seven T-2-mycotoxicated 7-day-old female layer-type Ross chickens (<i>Gallus gallus domesticus</i>). The sections were stained using an immunohistochemistry kit (Abcam, UK). In the kidneys of the healthy birds, strong staining of SGLT1 and SGLT2 was observed in the cytoplasm of the epithelial cells of the proximal straight and convoluted tubules. In the kidneys of the birds of the T-2 toxin group, weak expression of SGLT1 and SGLT2 with morphological changes occurred, indicating reduced glucose transport in the urinary system during T-2 mycotoxicosis.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14259-14269"},"PeriodicalIF":2.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674384/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dendrobium devonianum is an important medicinal plant, rich in flavonoid, with various pharmacological activities such as stomachic and antioxidant properties. In this study, we integrated metabolome and transcriptome analyses to reveal metabolite and gene expression profiles of D. devonianum, both green (GDd) and purple-red (RDd) of semi-annual and annual stems. A total of 244 flavonoid metabolites, mainly flavones and flavonols, were identified and annotated. Cyanidin and delphinidin were the major anthocyanidins, with cyanidin-3-O-(6″-O-p-Coumaroyl) glucoside and delphinidin-3-O-(6″-O-p-coumaroyl) glucoside being the highest relative content in the RDd. Differential metabolites were significantly enriched, mainly in flavonoid biosynthesis, anthocyanin biosynthesis, and flavone and flavonol biosynthesis pathways. Transcriptomic analysis revealed that high expression levels of structural genes for flavonoid and anthocyanin biosynthesis were the main reasons for color changes in D. devonianum stems. Based on correlation analysis and weighted gene co-expression network analysis (WGCNA) analysis, CHS2 (chalcone synthase) and UGT77B2 (anthocyanidin 3-O-glucosyltransferase) were identified as important candidate genes involved in stem pigmentation. In addition, key transcription factors (TFs), including three bHLH (bHLH3, bHLH4, bHLH5) and two MYB (MYB1, MYB2), which may be involved in the regulation of flavonoid biosynthesis, were identified. This study provides new perspectives on D. devonianum efficacy components and the Dendrobium flavonoids and stem color regulation.
泥盆石斛是一种重要的药用植物,富含黄酮类化合物,具有健胃、抗氧化等多种药理活性。在这项研究中,我们整合了代谢组学和转录组学分析,揭示了devoniand的代谢物和基因表达谱,包括半生和一年生茎的绿色(GDd)和紫红色(RDd)。共鉴定和注释了244种类黄酮代谢产物,主要是黄酮和黄酮醇。花青素和飞鸽苷是主要的花青素,其中花青素-3- o -(6″- o -对香豆醇基)葡萄糖苷和飞鸽苷-3- o -(6″- o -对香豆醇基)葡萄糖苷相对含量最高。差异代谢物显著富集,主要集中在类黄酮生物合成途径、花青素生物合成途径以及黄酮和黄酮醇生物合成途径。转录组学分析表明,黄酮类和花青素生物合成结构基因的高表达是导致泥盆子茎颜色变化的主要原因。通过相关分析和加权基因共表达网络分析(WGCNA),确定CHS2(查尔酮合成酶)和UGT77B2(花青素3- o-葡萄糖基转移酶)是参与茎色素沉积的重要候选基因。此外,还鉴定出可能参与类黄酮生物合成调控的关键转录因子(TFs),包括3个bHLH (bHLH3、bHLH4、bHLH5)和2个MYB (MYB1、MYB2)。本研究为石斛的功效成分、黄酮和茎色调控提供了新的视角。
{"title":"Molecular and Metabolic Regulation of Flavonoid Biosynthesis in Two Varieties of <i>Dendrobium devonianum</i>.","authors":"Ran Pu, Yawen Wu, Tian Bai, Yue Li, Xuejiao Li, Nengbo Li, Ying Zhou, Jingli Zhang","doi":"10.3390/cimb46120855","DOIUrl":"10.3390/cimb46120855","url":null,"abstract":"<p><p><i>Dendrobium devonianum</i> is an important medicinal plant, rich in flavonoid, with various pharmacological activities such as stomachic and antioxidant properties. In this study, we integrated metabolome and transcriptome analyses to reveal metabolite and gene expression profiles of <i>D. devonianum,</i> both green (GDd) and purple-red (RDd) of semi-annual and annual stems. A total of 244 flavonoid metabolites, mainly flavones and flavonols, were identified and annotated. Cyanidin and delphinidin were the major anthocyanidins, with cyanidin-3-O-(6″-O-p-Coumaroyl) glucoside and delphinidin-3-O-(6″-O-p-coumaroyl) glucoside being the highest relative content in the RDd. Differential metabolites were significantly enriched, mainly in flavonoid biosynthesis, anthocyanin biosynthesis, and flavone and flavonol biosynthesis pathways. Transcriptomic analysis revealed that high expression levels of structural genes for flavonoid and anthocyanin biosynthesis were the main reasons for color changes in <i>D. devonianum</i> stems. Based on correlation analysis and weighted gene co-expression network analysis (WGCNA) analysis, <i>CHS2</i> (chalcone synthase) and <i>UGT77B2</i> (anthocyanidin 3-O-glucosyltransferase) were identified as important candidate genes involved in stem pigmentation. In addition, key transcription factors (TFs), including three bHLH (bHLH3, bHLH4, bHLH5) and two MYB (MYB1, MYB2), which may be involved in the regulation of flavonoid biosynthesis, were identified. This study provides new perspectives on <i>D. devonianum</i> efficacy components and the <i>Dendrobium</i> flavonoids and stem color regulation.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14270-14290"},"PeriodicalIF":2.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674678/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ebru Haciosmanoglu Aldogan, Deniz Başaran, Bilgin Öner, Başak Günçer
Objectives: Dental bone formation involves various cellular and molecular mechanisms, and phytoestrogens such as formononetin (FORM) are promising because of their estrogenic, anti-inflammatory, and antioxidant effects. This study investigated the effect of FORM on osteoblast proliferation, differentiation, and mineralization in combination with spongiosa granulates (BO) in vitro.
Materials and methods: Human fetal osteoblast cells (hFOB1.19) were treated with increasing concentrations of FORM (1, 10, and 100 µg/mL), BO, or their combination. Cell proliferation was assessed using a MTT assay. Alkaline phosphatase (ALP) activity, intracellular Ca2+, and Pi levels were measured using ELISA. Vascular endothelial growth factor (VEGF) and osteocalcin expression levels were analyzed by western blotting.
Results: Cell proliferation increased with FORM, with or without BO, after 6 days (p < 0.001). FORM and BO had a synergistic effect on ALP activity (p < 0.001). Intracellular Ca2+ and Pi levels were highest in the BO-FORM group, suggesting superior mineralization (p < 0.05). VEGF and osteocalcin expression was significantly upregulated with FORM, alone and with BO (p < 0.05), indicating improved angiogenesis and bone maturation over 9 days.
Conclusions: FORM enhances osteoblast proliferation, differentiation, and mineralization potential, particularly in BO spongiosa granulates. These data support the in vitro potential of formononetin-phytoestrogen in promoting osteoblast differentiation and mineralization potential with BO. These findings suggest that FORM, combined with BO, could improve bone augmentation in clinical applications such as maxillofacial surgery. FORM shows valuable potential for clinical applications, such as maxillofacial surgery, by promoting faster and more effective healing.
{"title":"The Role of Formononetin in Osteoblast Function and Mineralization Potential with Deproteinized Bovine Bone Material.","authors":"Ebru Haciosmanoglu Aldogan, Deniz Başaran, Bilgin Öner, Başak Günçer","doi":"10.3390/cimb46120851","DOIUrl":"10.3390/cimb46120851","url":null,"abstract":"<p><strong>Objectives: </strong>Dental bone formation involves various cellular and molecular mechanisms, and phytoestrogens such as formononetin (FORM) are promising because of their estrogenic, anti-inflammatory, and antioxidant effects. This study investigated the effect of FORM on osteoblast proliferation, differentiation, and mineralization in combination with spongiosa granulates (BO) in vitro.</p><p><strong>Materials and methods: </strong>Human fetal osteoblast cells (hFOB1.19) were treated with increasing concentrations of FORM (1, 10, and 100 µg/mL), BO, or their combination. Cell proliferation was assessed using a MTT assay. Alkaline phosphatase (ALP) activity, intracellular Ca<sup>2+</sup>, and Pi levels were measured using ELISA. Vascular endothelial growth factor (VEGF) and osteocalcin expression levels were analyzed by western blotting.</p><p><strong>Results: </strong>Cell proliferation increased with FORM, with or without BO, after 6 days (<i>p</i> < 0.001). FORM and BO had a synergistic effect on ALP activity (<i>p</i> < 0.001). Intracellular Ca<sup>2+</sup> and Pi levels were highest in the BO-FORM group, suggesting superior mineralization (<i>p</i> < 0.05). VEGF and osteocalcin expression was significantly upregulated with FORM, alone and with BO (<i>p</i> < 0.05), indicating improved angiogenesis and bone maturation over 9 days.</p><p><strong>Conclusions: </strong>FORM enhances osteoblast proliferation, differentiation, and mineralization potential, particularly in BO spongiosa granulates. These data support the in vitro potential of formononetin-phytoestrogen in promoting osteoblast differentiation and mineralization potential with BO. These findings suggest that FORM, combined with BO, could improve bone augmentation in clinical applications such as maxillofacial surgery. FORM shows valuable potential for clinical applications, such as maxillofacial surgery, by promoting faster and more effective healing.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14215-14225"},"PeriodicalIF":2.8,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11675029/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892808","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Francisco Javier Azúa-Romeo, Sonia Bayona-Morón, Irene Rodriguez-Perez, Bárbara Angulo-Biedma
Atypical polypoid adenomyoma (APA) is a benign uterine lesion with a premalignant potential and occurs in women of reproductive age. The histological pattern is characterized by irregular epithelial proliferation and muscular stroma. Based on a case report, we performed a systematic review of the literature to assess the main immunohistochemical and molecular markers that contribute to its differential diagnosis against endometrial adenocarcinoma (EC). The distinction is essential for offering to patients a conservative treatment compared to the radical management required for endometrial cancer, a critical issue for the significant physical and psychological consequences that one procedure or another can have on women's health. We performed a meta-analysis of the immunohistochemical markers used for the histological diagnosis of APA, comparing it with our case study. The evaluated markers were beta-catenin, h-caldesmon, desmin, vimentin, smooth muscle alpha-actin, CD10, Ki67, estrogen receptor (ER), progesterone receptor (PR), pan-cytokeratin, PTEN, PMS2, MSH2, MSH6, p53, MLH1, and p16. Discrepancies were observed in the expression of CD10, h- caldesmon, and p16 when comparing APA with EC. The results of the case evaluated by our team showed beta-catenin nuclear expression and positive immunostaining for pan-cytokeratin, ER, and PR in the glands; smooth muscle actin and desmin positive expression in stromal muscle; and p16 positive immunostaining in squamous morules. Moreover, the c.94G>T p. (Asp132Tyr) mutation in the CTNNB1 gene was detected. This study supports the combination of appropriate immunohistochemical and molecular markers, along with the presumptive histological diagnosis, and determines the correct classification of the lesion as APA and not as other malignant pathologies, allowing for the establishment of a treatment protocol adjusted to the biological reality of this pathology.
非典型息肉样腺肌瘤(APA)是一种良性子宫病变,具有恶性前病变的潜力,发生在育龄妇女。组织学特征为不规则上皮增生和肌间质。基于一个病例报告,我们对文献进行了系统的回顾,以评估有助于子宫内膜腺癌(EC)鉴别诊断的主要免疫组织化学和分子标记。与子宫内膜癌所需的激进治疗相比,这种区别对于向患者提供保守治疗至关重要,子宫内膜癌是一个关键问题,因为一种或另一种手术可能对女性健康产生重大的生理和心理后果。我们对用于APA组织学诊断的免疫组织化学标志物进行了荟萃分析,并将其与我们的病例研究进行了比较。评估的标志物有β -连环蛋白、h-caldesmon、desmin、vimentin、平滑肌α -肌动蛋白、CD10、Ki67、雌激素受体(ER)、孕激素受体(PR)、泛细胞角蛋白、PTEN、PMS2、MSH2、MSH6、p53、MLH1和p16。与EC相比,APA在CD10、h- caldesmon和p16的表达上存在差异。我们团队评估的病例结果显示,腺体中β -连环蛋白核表达和泛细胞角蛋白、ER和PR的免疫染色阳性;平滑肌间质肌肌动蛋白、desmin阳性表达;p16免疫染色呈阳性。此外,还检测到CTNNB1基因中的c.94G>T . p. (Asp132Tyr)突变。本研究支持适当的免疫组织化学和分子标记的结合,以及推定的组织学诊断,并确定病变的正确分类为APA,而不是其他恶性病理,允许建立一个治疗方案,以适应这种病理的生物学现实。
{"title":"Advances in the Diagnosis of Atypical Polypoid Adenomyoma Combining Immunohistochemical and Molecular-Based Approaches: Case Report and Review of the Literature.","authors":"Francisco Javier Azúa-Romeo, Sonia Bayona-Morón, Irene Rodriguez-Perez, Bárbara Angulo-Biedma","doi":"10.3390/cimb46120850","DOIUrl":"10.3390/cimb46120850","url":null,"abstract":"<p><p>Atypical polypoid adenomyoma (APA) is a benign uterine lesion with a premalignant potential and occurs in women of reproductive age. The histological pattern is characterized by irregular epithelial proliferation and muscular stroma. Based on a case report, we performed a systematic review of the literature to assess the main immunohistochemical and molecular markers that contribute to its differential diagnosis against endometrial adenocarcinoma (EC). The distinction is essential for offering to patients a conservative treatment compared to the radical management required for endometrial cancer, a critical issue for the significant physical and psychological consequences that one procedure or another can have on women's health. We performed a meta-analysis of the immunohistochemical markers used for the histological diagnosis of APA, comparing it with our case study. The evaluated markers were beta-catenin, h-caldesmon, desmin, vimentin, smooth muscle alpha-actin, CD10, Ki67, estrogen receptor (ER), progesterone receptor (PR), pan-cytokeratin, PTEN, PMS2, MSH2, MSH6, p53, MLH1, and p16. Discrepancies were observed in the expression of CD10, h- caldesmon, and p16 when comparing APA with EC. The results of the case evaluated by our team showed beta-catenin nuclear expression and positive immunostaining for pan-cytokeratin, ER, and PR in the glands; smooth muscle actin and desmin positive expression in stromal muscle; and p16 positive immunostaining in squamous morules. Moreover, the c.94G>T p. (Asp132Tyr) mutation in the <i>CTNNB1</i> gene was detected. This study supports the combination of appropriate immunohistochemical and molecular markers, along with the presumptive histological diagnosis, and determines the correct classification of the lesion as APA and not as other malignant pathologies, allowing for the establishment of a treatment protocol adjusted to the biological reality of this pathology.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14204-14214"},"PeriodicalIF":2.8,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674219/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892511","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Katia Rupel, Lidia Fanfoni, Jacopo Dus, Martina Tommasini, Davide Porrelli, Barbara Medagli, Federica Canfora, Daniela Adamo, Roberto Di Lenarda, Giulia Ottaviani, Matteo Biasotto
The development of anticancer diagnostic and therapeutic strategies is of crucial importance to improve efficacy and therapeutic specificity. Here, we describe the synthesis and characterization of fluorescent self-assembling nanomicelles (NMs) based on a biocompatible polysaccharide (cellulose, CE) functionalized with a tetraphenyl ethylene derivative (TPEHy) and loaded with Doxorubicin (DOX) with aggregation-induced emission (AIE) properties and pH-dependent drug release. We obtained CE-TPEHy-NMs with an average diameter of 60 ± 17 nm for unloaded NMs and 86 ± 25 nm for NMs loaded with DOX, respectively. Upon testing different conditions, we obtained an encapsulation efficiency of 86% and a loading capacity of 90%. A controlled dialysis experiment showed that the release of DOX after 48 h is minimal at pH 7.4 (11%), increasing at pH 6.5 (50%) and at its maximum at pH 4.5 (80%). The cytotoxicity of blank and loaded CE-TPEHy-NMs at increasing concentrations and different pH conditions was tested on a MG-63 human osteosarcoma cell line. Based on viability assays at pH 7.4, neither unloaded nor loaded CE-TPEHy-NMs exerted any inhibition on cell proliferation. At pH 6.5, proliferation inhibition significantly increased, confirming the pH-dependent release. We characterized and studied the performance of CE-based amphiphilic, biocompatible NMs for controlled drug release in acidic conditions, such as tumor microenvironments. Further studies are required to optimize their synthesis process and to validate their antitumoral properties in vivo.
{"title":"Development and Characterization of Biocompatible Cellulose-Tetraphenylethylene Hydrazone Self-Assembling Nanomicelles with Acidity-Triggered Release of Doxorubicin for Cancer Therapy.","authors":"Katia Rupel, Lidia Fanfoni, Jacopo Dus, Martina Tommasini, Davide Porrelli, Barbara Medagli, Federica Canfora, Daniela Adamo, Roberto Di Lenarda, Giulia Ottaviani, Matteo Biasotto","doi":"10.3390/cimb46120853","DOIUrl":"10.3390/cimb46120853","url":null,"abstract":"<p><p>The development of anticancer diagnostic and therapeutic strategies is of crucial importance to improve efficacy and therapeutic specificity. Here, we describe the synthesis and characterization of fluorescent self-assembling nanomicelles (NMs) based on a biocompatible polysaccharide (cellulose, CE) functionalized with a tetraphenyl ethylene derivative (TPEHy) and loaded with Doxorubicin (DOX) with aggregation-induced emission (AIE) properties and pH-dependent drug release. We obtained CE-TPEHy-NMs with an average diameter of 60 ± 17 nm for unloaded NMs and 86 ± 25 nm for NMs loaded with DOX, respectively. Upon testing different conditions, we obtained an encapsulation efficiency of 86% and a loading capacity of 90%. A controlled dialysis experiment showed that the release of DOX after 48 h is minimal at pH 7.4 (11%), increasing at pH 6.5 (50%) and at its maximum at pH 4.5 (80%). The cytotoxicity of blank and loaded CE-TPEHy-NMs at increasing concentrations and different pH conditions was tested on a MG-63 human osteosarcoma cell line. Based on viability assays at pH 7.4, neither unloaded nor loaded CE-TPEHy-NMs exerted any inhibition on cell proliferation. At pH 6.5, proliferation inhibition significantly increased, confirming the pH-dependent release. We characterized and studied the performance of CE-based amphiphilic, biocompatible NMs for controlled drug release in acidic conditions, such as tumor microenvironments. Further studies are required to optimize their synthesis process and to validate their antitumoral properties in vivo.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14244-14258"},"PeriodicalIF":2.8,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674980/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142892670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}