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Expression of Angiogenesis-related Genes in a Group of Iranian Cases of Breast Cancer 一组伊朗乳腺癌血管生成相关基因的表达
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2021-02-01 DOI: 10.2174/1875692117999201215161142
Seyyed Amir Yasin Ahmadi, S. Sayad, F. Shahsavar, Reza Nekouian, M. Panahi, Saed Sayad, M. B. Boroujeni, S. Akbari
This study aims to design an angiogenesis gene expression profile; to study angiogenesis geneexpression profile in breast cancer; and to map angiogenesis gene expression profile in individual participants. In molecular etiology of each disease, there are some important molecules involved in therelated pathways. From the viewpoint of precision medicine, molecular etiology of a disease is differentperson by person because of genetic variations of the genes involved in these pathways. This point of viewintends researchers of drug development to design novel drugs for targeted therapy based on the exact etiology.In the case of angiogenesis, there is a drug profile parallel to the molecular profile. Bevacizumab,sunitinib and aflibercept are examples of anti-angiogenic drugs. A hallmark of solid tumors is sustained angiogenesis. Vascular endothelial growth factors(VEGF), VEGF receptors (VEGFR) and placental growth factor (PlGF) are involved in angiogenesis. Weaimed to study the gene expression profile of angiogenesis including VEGF-A, VEGF-B, VEGF-C,VEGF-D, VEGFR-1, VEGFR-2, VEGFR-3 and PlGF in an Iranian group of patients undergoing breastsurgery due to breast cancer and breast fibroadenoma.Tumor tissue samples of a group of patients with invasive ductal carcinoma (IDC) and a groupof patients with fibroadenoma (Fib) were used. Gene expression was studied by real-time quantitativepolymerase chain reaction (q-PCR) and fold changes (FC) with their 95% confidence intervals (CI) werereported based on calibration with normal breast tissue.All the genes showed significant up-regulation in IDC group. The extensive up-regulation wasfor VEGFR-2 (FC=52.68; 95% CI=17.96-154.47; P<0.001). In Fib group, PlGF showed a significant upregulation(FC=10.41; 95% CI=5.35-20.26; P=0.002). Comparison of IDC group with Fib group showedsignificant up-regulation of VEGFR-1, VEGFR-2 and VEGFR-3 in IDC group (P<0.05). Malignancy of breast tumors is associated with overexpression of all the genes of this profile.However, only VEGFRs showed up-regulation in comparison to benign tumors. Individualized targetedtherapy, according to this profile, should be studied in the future.
本研究旨在设计血管生成基因表达谱;研究乳腺癌血管生成基因表达谱;并绘制个体参与者的血管生成基因表达谱。在每一种疾病的分子病因学中,都有一些重要的分子参与相关的通路。从精准医学的角度来看,疾病的分子病因是因人而异的,因为参与这些途径的基因存在遗传变异。这一观点促使药物开发人员根据确切的病因设计新的靶向治疗药物。在血管生成的情况下,有一个平行于分子谱的药物谱。贝伐单抗、舒尼替尼和阿非利西普是抗血管生成药物的例子。实体瘤的一个特征是持续的血管生成。血管内皮生长因子(VEGF)、VEGF受体(VEGFR)和胎盘生长因子(PlGF)参与血管生成。我们旨在研究伊朗一组因乳腺癌和乳腺纤维腺瘤接受乳房手术的患者血管生成的基因表达谱,包括VEGF-A、VEGF-B、VEGF-C、VEGF-D、VEGFR-1、VEGFR-2、VEGFR-3和PlGF。采用浸润性导管癌(IDC)患者组和纤维腺瘤(Fib)患者组的肿瘤组织样本。通过实时定量聚合酶链反应(q-PCR)和折叠变化(FC)研究基因表达,并根据正常乳腺组织校准报告其95%置信区间(CI)。IDC组所有基因均显著上调。广泛上调的是VEGFR-2 (FC=52.68;95%可信区间= 17.96 - -154.47;P < 0.001)。Fib组PlGF明显上调(FC=10.41;95%可信区间= 5.35 - -20.26;P = 0.002)。IDC组与Fib组比较,vegf fr -1、VEGFR-2、VEGFR-3在IDC组均显著上调(P<0.05)。乳腺肿瘤的恶性与所有这些基因的过表达有关。然而,与良性肿瘤相比,只有VEGFRs表现出上调。个性化的靶向治疗,根据这一概况,应该在未来进行研究。
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引用次数: 6
AtreMorine Treatment Regulates DNA Methylation in Neurodegenerative Disorders: Epigenetic and Pharmacogenetic Studies atromine治疗调节神经退行性疾病的DNA甲基化:表观遗传学和药物遗传学研究
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2021-02-01 DOI: 10.2174/1875692117999201231152800
Olaia A. Martínez-Iglesias, V. Naidoo, J. Carril, Iván Carrera, L. Corzo, Susana Rodríguez, Ramón Alejo, Natalia Cacabelos, R. Cacabelos
Neurodegenerative disorders are one of the major health problemsin Western countries. Genetic and epigenetic mechanisms play crucial roles in theorigin and progression of these disorders. DNA methylation is the most widely studied epigeneticmark and is an important regulator of gene expression.Little is known about the influence of bioactive dietary components on epigeneticmechanisms in neurodegenerative diseases. In this study, we investigated the effectsof E-PodoFavalin-15999 (AtreMorine®), a bioproduct with potent neuroprotective and dopamineenhancing capabilities, on DNA methylation patterns in Alzheimer’s (AD) andParkinson’s Disease (PD). We also aimed to assess, in patients with PD, the effects thatgenetic variation across candidate pharmacogenes may have on dopamine synthesis andrelease in response to treatment with AtreMorine.We analyzed global DNA methylation and de novo DNA methyltransferase(DNMT) expression in a transgenic (3xTg) mouse model of AD, and further examinedglobal DNA methylation in blood samples from patients with PD.AtreMorine treatment increased global DNA methylation in 3xTg mice and inpatients with Parkinson´s disease, and produced high DNMT3a expression in AD mice.We observed varied responses to AtreMorine across the following pharmacogenetic genophenotypesanalyzed, cytochrome P450 oxidases (CYP2D6, CYP2C19, CYP2C9,CYP3A4, CYP3A5, CYP1A2), human arylamine N-acetyltransferase 2 (NAT2), the vitaminK epoxide reductase complex subunit 1 (VKORC1), ATP-binding cassette subfamily Bmember 1 (ABCB1), and solute carrier organic anion transporter family member 1B1(SLCOB1). Our results suggest that AtreMorine regulates DNA methylation in neurodegenerativedisorders and may constitute a new therapeutic option for the treatment ofthese pathologies.
神经退行性疾病是西方国家的主要健康问题之一。遗传和表观遗传机制在这些疾病的发生和发展中起着至关重要的作用。DNA甲基化是研究最广泛的表观遗传标记,是基因表达的重要调控因子。关于生物活性膳食成分对神经退行性疾病表观遗传机制的影响知之甚少。在这项研究中,我们研究了E-PodoFavalin-15999 (atremine®),一种具有有效神经保护和多巴胺增强能力的生物制品,对阿尔茨海默病(AD)和帕金森病(PD) DNA甲基化模式的影响。我们还旨在评估,在PD患者中,候选药物基因的遗传变异可能对阿特罗明治疗后多巴胺合成和释放的影响。我们在转基因(3xTg) AD小鼠模型中分析了全局DNA甲基化和从头DNA甲基转移酶(DNMT)表达,并进一步检测了PD患者血液样本中的全局DNA甲基化。阿特罗明治疗增加了3xTg小鼠和帕金森病住院患者的整体DNA甲基化,并在AD小鼠中产生高DNMT3a表达。我们观察到atromin在以下药理学基因表型分析中的不同反应,细胞色素P450氧化酶(CYP2D6, CYP2C19, CYP2C9,CYP3A4, CYP3A5, CYP1A2),人芳香胺n -乙酰转移酶2 (NAT2),维生素ink环氧化物还原酶复合物亚基1(VKORC1), atp结合盒亚家族b1成员(ABCB1)和溶质载体有机阴离子转运蛋白家族成员1B1(SLCOB1)。我们的研究结果表明,atromine调节神经退行性疾病的DNA甲基化,可能成为治疗这些疾病的一种新的治疗选择。
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引用次数: 6
Gene Frequency of CYP2D6*4 and *10 Variants in Karachi Population 卡拉奇人群CYP2D6*4和*10变异的基因频率
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2021-02-01 DOI: 10.2174/1875692117999201014162804
T. Fatima, Farah Zeb, A. Farooq
In the human population, CYP2D6 is highly polymorphic group ofgenes involved in metabolizing ~25% of all clinically used neuroleptic and antidepressantdrugs. The CYP2D6*4 and CYP2D6*10 variants are prevalent in Asian population exhibitingvariable drug metabolizing ability thereby affecting drug therapeutic responses.To determine the genotypic frequencies of CYP2D6*1 (Normal metabolizer), *4(Poor metabolizer) and *10 (Intermediate metabolizer) variants among schizophrenic subjectsand control group from a sub-set of Karachi population.Genomic Deoxyribonucleic Acid (gDNA) was extracted and amplified withCYP2D6*4 and *10 primers using Polymerase Chain Reaction (PCR) and digested by Bacillusstereothermophilus (BstN1) and Hemophilus parahemolyticus (Hph1) restriction enzymes. Thedigested gDNA bands were identified as wild type or mutants and their genotypic frequencieswere estimated by Hardy-Weinberg Equation (HWE). In normal subjects, frequencies of CYP2D6*1 wild allele (57%) coded functional enzyme,CYP2D6*4 variant (9%) producing non-functional enzyme and CYP2D6*10 allele (70%)producing altered enzyme with reduced activity that was most prevalent in schizophrenic patients.Drug response is a complex phenomenon that is governed by genetic and environmentalfactors. Antipsychotic drug metabolism among schizophrenic patients with variable drugresponsesis related to CYP2D6 polymorphism. Clinically, it is imperative to differentiate betweenresponders and non-responders using the treatment, otherwise the drug will be either nonefficaciousor toxic to the patients. Therefore, a gene testing system needs to be established toidentify patient’s genotype(s) predicting whether they are normal, poor, intermediate or ultrarapiddrug metabolizer thereby allowing clinicians to adjust dose(s) of antipsychotic drug(s).Genotyping of CYP2D6 alleles among schizophrenic patients indicated prevalenceof *4 and *10 variants in Karachi population producing non-functional (poor metabolizer)and reduced functional (intermediate metabolizer) drug metabolizing enzymes phenotypes,respectively. Hence, dose adjustment is crucial otherwise schizophrenia condition will not beimproved satisfactorily. Therefore, CYP2D6 gene screening program should be included inclinical practice to help clinicians to prescribe appropriate doses according to patient’s genotypeand minimize sufferings of schizophrenics including side effects of drug that might occurat high drug concentrations.
在人类中,CYP2D6是一组高度多态性的基因,参与了约25%的临床使用的抗抑郁药物的代谢。CYP2D6*4和CYP2D6*10变异在亚洲人群中普遍存在,表现出不同的药物代谢能力,从而影响药物治疗反应。测定卡拉奇人群中精神分裂症患者和对照组CYP2D6*1(正常代谢者)、*4(不良代谢者)和*10(中间代谢者)变异的基因型频率。基因组脱氧核糖核酸(gDNA)用cyp2d6 *4和*10引物用聚合酶链式反应(PCR)扩增,用嗜热杆菌(BstN1)和副溶血性嗜血杆菌(Hph1)限制性内切酶酶切。通过Hardy-Weinberg方程(HWE)估计其基因型频率,确定其基因型为野生型或突变体。在正常受试者中,CYP2D6* 1野生等位基因编码功能酶(57%)、CYP2D6*4变异(9%)产生非功能酶和CYP2D6*10等位基因(70%)产生活性降低的改变酶的频率在精神分裂症患者中最为普遍。药物反应是一种复杂的现象,受遗传和环境因素的影响。CYP2D6多态性与变异性精神分裂症患者抗精神病药物代谢的关系在临床上,必须区分对治疗有反应和无反应的患者,否则药物对患者无效或有毒。因此,需要建立一个基因检测系统来识别患者的基因型,预测他们是正常、不良、中间还是超快速药物代谢,从而使临床医生能够调整抗精神病药物的剂量。精神分裂症患者CYP2D6等位基因分型显示卡拉奇人群中存在*4和*10变异,分别产生无功能(低代谢)和功能降低(中间代谢)的药物代谢酶表型。因此,剂量调整是至关重要的,否则精神分裂症病情将无法得到令人满意的改善。因此,CYP2D6基因筛选程序应纳入临床实践,帮助临床医生根据患者的基因型开出合适的剂量,尽量减少精神分裂症患者的痛苦,包括药物高浓度可能发生的药物副作用。
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引用次数: 0
Autosomal Recessive Hereditary Spastic Paraplegia: A Rare Case of a Family with Phenotypic Variation 常染色体隐性遗传性痉挛性截瘫:一例罕见的家族表型变异
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2020-12-11 DOI: 10.2174/1875692117999201211142908
M. Saban, Tal Shachar
Hereditary spastic paraplegia is a neurodegenerative disorderwith a pure and complex form. More than 50 genetic types are currently known, with differentages of onset for characteristic symptoms. Data regarding hereditary spastic paraplegiaremain scarce, and the rare subtype of spastic paraplegia type 5 is no exception. This report presents data regarding the case of a single family, from the city ofDjerba, with five individuals affected with hereditary spastic paraplegia, the largest numberof spastic paraplegia type 5 mutated family members so far reported in current literature.To emphasize the importance of genetic testing, we retrospectively reviewed afamilial confirmed case of hereditary spastic paraplegia. Clinical features of family memberswere described.The family presents a large phenotypic variation that, in part, differs from theknown phenotypic presentations. Age of onset and clinical manifestation showed interfamilialvariations. The alteration found in CYP7B1 (c.1081C>T; p.R361*) may help emphasizethe importance of genetic testing and the much-needed treatment options alreadyin use in current neurological practice. The understanding of the molecular pathways of hereditary spastic paraplegia,together with the establishment of disease biomarkers, will hopefully lead to betterand more personalized treatment.
遗传性痉挛性截瘫是一种单纯而复杂的神经退行性疾病。目前已知的基因类型超过50种,具有不同的特征症状。关于遗传性痉挛性截瘫的资料仍然很少,罕见的痉挛性截瘫5型也不例外。本报告提供了来自杰尔巴市的一个家庭的病例数据,该家庭有5个人患有遗传性痉挛性截瘫,这是目前文献中报道的痉挛性截瘫5型突变家庭成员数量最多的病例。为了强调基因检测的重要性,我们回顾了一例家族性的遗传性痉挛性截瘫病例。描述了家庭成员的临床特征。该家族表现出很大的表型变异,部分不同于已知的表型表现。发病年龄和临床表现存在家族间差异。CYP7B1发生改变(c.1081C>T;p.R361*)可能有助于强调基因检测的重要性以及目前神经学实践中已经使用的急需的治疗方案。对遗传性痉挛性截瘫分子途径的了解,以及疾病生物标志物的建立,将有望带来更好、更个性化的治疗。
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引用次数: 0
T Allele of the DRD2 Taq1 A Gene Polymorphism Increases the Predisposition to Drug Addiction in Indonesian Population DRD2 Taq1 A基因多态性的T等位基因增加了印度尼西亚人群的吸毒倾向
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2020-12-11 DOI: 10.2174/1875692117999201211142201
Viren Ramadhan, F. Rahman, A. Sadewa, Z. Ikawati
Dopamine plays an important role in mediating the rewardingproperties in the abuse of drugs. The Taq1A polymorphism is a commonly studied DRD2gene variant whereby carriers of the low-function T allele (T/T or T/C genotypes) showreduced brain dopamine function. Therefore, individuals who have the DRD2 Taq1A polymorphismwill experience higher levels of drug addiction because the T allele is associatedwith a reduced number of dopamine binding sites in the brain. A study of this genehas been conducted in some areas, but there is no research for the population of Indonesia.This study will focus on the frequency of the DRD2 Taq1A gene polymorphismin the population of Indonesia and define its association with drug addiction.This is a cross sectional study in which 182 subjects were divided into 91 drugaddictedpatients and 91 non-drug-addicted control subjects. The genotype analysis wascarried out by a modified allele-specific Polymerase Chain Reaction (PCR) method. The frequency of the T/T and C/T was significantly higher in the addicted thancontrol subjects. They are 6.6% and 63.7% compared to 0% and 3.3%. Likewise, the T alleleis more frequent in the addicted equal to 38%, compared to only 2% in the controlsubjects. The frequency of the T allele between the addicted and control subjects shows asignificant difference (p-value < 0.0001; 95% CI), with the addicted being at a higher riskof having the T allele (OR = 37.3; 95% CI [11.46-121.29]).There is a significant difference in the frequency of the DRD2 Taq1A genepolymorphism between addicted patients and control subjects. Thus, there is an associationbetween this gene polymorphism and the development of drug addiction with T alleleincreases the predisposition to addiction.
多巴胺在药物滥用的奖赏特性中起着重要的调节作用。Taq1A多态性是一种常见的drd2基因变异,其低功能T等位基因(T/T或T/C基因型)的携带者显示脑多巴胺功能降低。因此,具有DRD2 Taq1A多态性的个体将经历更高水平的药物成瘾,因为T等位基因与大脑中多巴胺结合位点数量减少有关。一些地区已经对这种基因进行了研究,但没有针对印度尼西亚人口的研究。本研究将重点关注印度尼西亚人群中DRD2 Taq1A基因多态性的频率,并确定其与药物成瘾的关系。这是一项横断面研究,182名受试者被分为91名吸毒成瘾患者和91名非吸毒成瘾对照组。采用改良的等位基因特异性聚合酶链反应(PCR)方法进行基因型分析。成瘾者的T/T和C/T频率明显高于对照组。分别是6.6%和63.7%,而0%和3.3%。同样,T等位基因在成瘾者中出现的频率更高,达到38%,而在对照组中只有2%。成瘾者与对照组之间T等位基因频率差异有统计学意义(p值< 0.0001;95% CI),成瘾者携带T等位基因的风险更高(OR = 37.3;95% ci[11.46-121.29])。成瘾患者与对照组之间DRD2 Taq1A基因多态性频率存在显著差异。因此,这种基因多态性与药物成瘾之间存在关联,T等位基因增加了成瘾的易感性。
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引用次数: 0
Genetic Determinants Involved in the Osteoporosis Pathophysiology 参与骨质疏松病理生理的遗传决定因素
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2020-12-11 DOI: 10.2174/1875692117999201211143315
Madiha Nooreen, Shafia Fatima, R. Nagarapu, M. Khan, A. Khan
Osteoporosis is a chronic disease characterized by decreased bone mass anddistorted microarchitecture that leads to increased bone fragility making an individualprone to fractures. It is one of the most widely affected diseases worldwide that has thepotential to cause serious morbidity, mortality and cost implications. It is a multifactorialdisease that is influenced by the interaction between genetic, hormonal, nutritional andenvironmental factors. As it is a polygenic disorder, myriad genes influence the diseasecondition to a varied extent. The identification of genes or loci that effects the developmentof the disease will help not only in individualizing the prognosis, treatment and preventionof fractures but also in discovering novel therapeutic agents. The genetic associationstudies on osteoporosis have reported conflicting results. Well designed and efficientlyconducted studies with enough power to detect variations in the interaction betweenvarious contributing factors of the disease in the homogenous population are needed to establishconclusive genotypic associations with the disease. The present review brieflysummarizes the data published on the genes affecting osteoporosis development.
骨质疏松症是一种慢性疾病,其特征是骨量减少和微结构扭曲,导致骨脆性增加,使个体容易骨折。它是世界范围内影响最广泛的疾病之一,有可能导致严重的发病率、死亡率和成本问题。它是一种多因素疾病,受遗传、激素、营养和环境因素相互作用的影响。由于它是一种多基因疾病,无数基因在不同程度上影响疾病状况。鉴定影响疾病发展的基因或位点不仅有助于个体化预后、治疗和预防骨折,而且有助于发现新的治疗药物。骨质疏松症的遗传关联研究报告了相互矛盾的结果。在同质人群中,需要精心设计和有效进行的研究,以检测疾病的各种促成因素之间相互作用的变化,以建立与疾病的结论性基因型关联。本文对影响骨质疏松症发生的基因资料进行了综述。
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引用次数: 1
Novel Somatic Mutations of the CDH1 Gene Associated with Gastric Cancer: Prediction of Pathogenicity Using Comprehensive In silico Methods 与胃癌相关的CDH1基因的新体细胞突变:用综合计算机方法预测致病性
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2020-11-09 DOI: 10.2174/1875692117999201109210911
P. Chakraborty, S. Ghatak, R. Yadav, Subhajit Mukherjee, Lalchhandama Chhakchhuak, S. Chenkual, Thomas Zomuana, S. T. Lalruatfela, A. Maitra, N. S. Kumar
Mutations in the CDH1 and the role of E-cadherin proteins are wellestablished in gastric cancer. Several in silico tools are available to predict the pathogenicityof the mutations present in the genes with varying efficiency and sensitivity to detect thepathogenicity of the mutations.Our objective was to identify somatic pathogenic variants in CDH1 involved inGastric Cancer (GC) by Sanger sequencing as well as using in silico tools and to find outthe best efficient tool for pathogenicity prediction of somatic missense variants.Sanger sequencing of CDH1 was done for 80 GC tumor and adjacent normal tissues.Synthetic data sets were downloaded from the COSMIC database for comparison ofthe known mutations with the discovered mutations from the present study. Different algorithmswere used to predict the pathogenicity of the discovery and synthetic mutation datasetsusing various in-silico tools. Statistical analysis was done to check the efficiency ofthe tools to predict pathogenic variants by using MEDCALC and GraphPad.Six missense somatic variants were found in exons 3, 4, 7, 9, 12 and 15. Out of the6 variants, 5 variants (chr16:68835618C>A, chr16:68845613A>C, chr16:68847271T>G,chr16:68856001T>G, chr16:68863585G>C) were novel and not reported in disease variantdatabases. PROVEAN, Polyphen 2 and PANTHER predicted the pathogenicity of the variantsmore efficiently in both the discovery and synthetic datasets. The overall sensitivity ofpredictions ranged from 60 to 80%, depending on the program used, with specificity from55 to 100%.This study estimates the specificity and sensitivity of prediction tools in predictingnovel missense variants of CDH1 in Gastric Cancer. We report that PROVEAN,Polyphen 2 and PANTHER are efficient predictors with constant higher specificity and accuracy.This study will help the researchers to explore mutations with the best pathogenicityprediction tools.
在胃癌中,CDH1的突变和e -钙粘蛋白的作用已经得到了很好的证实。有几种计算机工具可用于预测基因中存在的突变的致病性,其检测突变的效率和灵敏度各不相同。我们的目标是通过Sanger测序和使用计算机工具鉴定与胃癌(GC)相关的CDH1体细胞致病变异,并找到最有效的体细胞错义变异致病性预测工具。对80例胃癌及癌旁正常组织进行CDH1基因Sanger测序。从COSMIC数据库下载合成数据集,将已知突变与本研究中发现的突变进行比较。使用不同的算法来预测发现的致病性,并使用各种计算机工具合成突变数据集。采用MEDCALC和GraphPad进行统计分析,检验两种工具预测致病变异的效率。在外显子3、4、7、9、12和15中发现6个错义体细胞变异。在6个变异中,5个变异(chr16:68835618C>A、chr16:68845613A>C、chr16:68847271T>G、chr16:68856001T>G、chr16:68863585G>C)为新变异,未在疾病变异数据库中报道。provan, Polyphen 2和PANTHER在发现和合成数据集中都能更有效地预测变异的致病性。根据所使用的程序,预测的总体灵敏度从60%到80%不等,特异性从55%到100%不等。本研究估计了预测工具在胃癌中预测CDH1新型错义变异的特异性和敏感性。我们报告PROVEAN,Polyphen 2和PANTHER是有效的预测因子,具有较高的特异性和准确性。这项研究将帮助研究人员利用最佳的致病性预测工具来探索突变。
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引用次数: 2
In Silico Study of Potential Cross-Kingdom Plant MicroRNA Based Regulation in Chronic Myeloid Leukemia 慢性髓系白血病中潜在的跨界植物MicroRNA调控的计算机研究
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2020-10-28 DOI: 10.2174/1875692118666200106113610
M. H. Elias, Noraziah Nordin, N. A. Hamid
Chronic Myeloid Leukaemia (CML) is associated with the BCRABL1gene, which plays a central role in the pathogenesis of CML. Thus, it is crucial tosuppress the expression of BCR-ABL1 in the treatment of CML. MicroRNA is known tobe a gene expression regulator and is thus a good candidate for molecularly targeted therapyfor CML. This study aims to identify the microRNAs from edible plants targeting the 3’Untranslated Region (3’UTR) of BCR-ABL1.In this in silico analysis, the sequence of 3’UTR of BCR-ABL1 was obtainedfrom Ensembl Genome Browser. PsRNATarget Analysis Server and MicroRNA TargetPrediction (miRTar) Server were used to identify miRNAs that have binding conformitywith 3’UTR of BCR-ABL1. The MiRBase database was used to validate the species ofplants expressing the miRNAs. The RNAfold web server and RNA COMPOSER wereused for secondary and tertiary structure prediction, respectively.In silico analyses revealed that cpa-miR8154, csi-miR3952, gma-miR4414-5p,mdm-miR482c, osa-miR1858a and osa-miR1858b show binding conformity with strongmolecular interaction towards 3’UTR region of BCR-ABL1. However, only cpa-miR-8154, osa-miR-1858a and osa-miR-1858b showed good target site accessibility.It is predicted that these microRNAs post-transcriptionally inhibit the BCRABL1gene and thus could be a potential molecular targeted therapy for CML. However,further studies involving in vitro, in vivo and functional analyses need to be carried out todetermine the ability of these miRNAs to form the basis for targeted therapy for CML.
慢性髓性白血病(CML)与bcrabl1基因相关,该基因在CML的发病机制中起核心作用。因此,抑制BCR-ABL1的表达在CML的治疗中至关重要。众所周知,MicroRNA是一种基因表达调节因子,因此是CML分子靶向治疗的良好候选者。本研究旨在鉴定可食用植物中靶向BCR-ABL1 3 ' untranslingregion (3'UTR)的microrna。在此计算机分析中,BCR-ABL1的3'UTR序列从Ensembl Genome Browser中获得。使用psrnatartanalysis Server和MicroRNA TargetPrediction (miRTar) Server来鉴定与BCR-ABL1 3'UTR结合符合的mirna。MiRBase数据库用于验证表达miRNAs的植物种类。使用RNA old web server和RNA COMPOSER分别进行二级和三级结构预测。芯片分析显示,cpa-miR8154、ci - mir3952、gma-miR4414-5p、mda - mir482c、osa-miR1858a和osa-miR1858b对BCR-ABL1的3'UTR区具有强分子相互作用。然而,只有cpa-miR-8154、osa-miR-1858a和osa-miR-1858b表现出良好的靶点可达性。据预测,这些microrna转录后抑制bcrabl1基因,因此可能成为CML的潜在分子靶向治疗方法。然而,需要进行进一步的体外、体内和功能分析研究,以确定这些mirna能否成为CML靶向治疗的基础。
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引用次数: 1
Oncogenomics and CYP450 Implications in Personalized Cancer Therapy 肿瘤基因组学和CYP450在个性化癌症治疗中的意义
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2020-10-28 DOI: 10.2174/1875692117999200517122652
G. K. Udayaraja, I. Emerson
The Human Genome Project has unleashed the power of genomicsin clinical practice as a choice of individualized therapy, particularly in cancertreatment. Pharmacogenomics is an interdisciplinary field of genomics that deals withdrug response, based on individual genetic makeup.The main genetic events associated with carcinogenesis activate oncogenes orinactivate tumor-suppressor genes. Therefore, drugs should be specific to inactivate orregulate these mutant genes and their protein products for effective cancer treatment. Inthis review, we summarize how polymedication decisions in cancer treatments based onthe evaluation of cytochrome P450 (CYP450) polymorphisms are applied for pharmacogeneticassessment of anticancer therapy outcomes.However, multiple genetic events linked, inactivating a single mutant gene product,may be insufficient to inhibit tumor progress. Thus, genomics and pharmacogeneticsdirectly influence a patient’s response and aid in guiding clinicians to select the safest andmost effective combination of medications for a cancer patient from the initial prescription.This review outlines the roles of oncogenes, the importance of cytochromeP450 (CYP450) in cancer susceptibility, and its impact on drug metabolism, proposingcombined approaches to achieve precision therapy.
人类基因组计划释放了基因组学在临床实践中的力量,作为个体化治疗的选择,特别是在癌症治疗中。药物基因组学是一个跨学科的基因组学领域,研究基于个体基因组成的药物反应。与癌变有关的主要遗传事件是激活癌基因或使肿瘤抑制基因失活。因此,药物应该是特异性的,以灭活或调节这些突变基因及其蛋白产物,从而有效地治疗癌症。在这篇综述中,我们总结了基于细胞色素P450 (CYP450)多态性评估的癌症治疗多药决策如何应用于抗癌治疗结果的药理学评估。然而,多个遗传事件相关联,使单个突变基因产物失活,可能不足以抑制肿瘤进展。因此,基因组学和药物遗传学直接影响患者的反应,并帮助指导临床医生从最初的处方中为癌症患者选择最安全、最有效的药物组合。本文概述了癌基因的作用、细胞色素p450 (CYP450)在癌症易感性中的重要性及其对药物代谢的影响,并提出了实现精准治疗的联合方法。
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引用次数: 0
Genomics and Pharmacogenomics of Rhinosinusitis 鼻窦炎的基因组学和药物基因组学
Q4 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2020-10-28 DOI: 10.2174/1875692117999200801024849
J. Guerra, J. Carril, M. Alcaraz, M. Santiago, L. Corzo, R. Cacabelos
Polymorphisms of selected inflammatory and metabolic geneshave been described in the etiology of chronic rhinosinusitis, and these effects can be explainedon a pharmacogenetic basis.The purpose of this study was to examine whether there is an association betweeninflammatory factors and some of these alleles, by associating these genetic variableswith each other.CYP1A2, CYP2D6, CYP2C19, CYP2C9, CYP3A4, CYP3A5, G6PD, NAT2,UGT1A1, VKORC1, ABCB1, SLCO1B1, APOE, TNF, IL1B, IL6 and IL6R gene polymorphismswere analyzed by PCR. Drug-metabolizing enzymes were classified according totheir phenotype. Blood cell counts and biochemical parameters were also considered.Significant differences were found in the CYP1A2 phenotype, with fewerCYP1A2 normal metabolizers (NMs) expressing sinusitis (14.3% vs 30%) and a greaternumber of CYP1A2 ultra-rapid-metabolizers (UMs)(85% vs 69%); and in TNF, affectingTNF-A/A (4% vs 2%) and TNF-G/G (78% vs 66%) compared with TNF-G/A (19% vs32%) carriers. 96% of patients with CRS had at least one G allele. When trigenic variablesinvolved in sinusitis were analyzed, statistical differences were found in SLCO1B1-TNFCYP1A2,with a higher proportion of subjects with 1/1-GG-UM (44.3%); and IL1B-TNFCYP1A2with CC-GG-UM (26%), CT-GG-UM (19.8%) and CC-GG-NM (13.7%) genophenotypes,respectively. Subjects with sinusitis had a higher eosinophil count (308.80cel/mcL vs 263.14 cel/mcL) and lower HDL levels (265.34 vs 297.85 mg/dL).SLCO1B1-TNF-CYP1A2 and IL1B-TNF-CYP1A2 trigenic clusters may conditionthe chronicity of sinusitis. Eosinophilia and HDL are factors involved in inflammation,and thus in the development of CRS.
在慢性鼻窦炎的病因学中已经描述了选定的炎症和代谢基因的多态性,这些影响可以在药理学基础上得到解释。本研究的目的是通过将这些遗传变量相互关联来检查炎症因子和其中一些等位基因之间是否存在关联。采用PCR分析CYP1A2、CYP2D6、CYP2C19、CYP2C9、CYP3A4、CYP3A5、G6PD、NAT2、UGT1A1、VKORC1、ABCB1、SLCO1B1、APOE、TNF、IL1B、IL6、IL6R基因多态性。根据药物代谢酶的表型进行分类。血细胞计数和生化参数也被考虑在内。在CYP1A2表型上发现显著差异,表达鼻窦炎的CYP1A2正常代谢物(NMs)较少(14.3%对30%),而CYP1A2超快速代谢物(UMs)较多(85%对69%);在TNF中,与TNF-G/A携带者(19%对32%)相比,影响TNF-A/A(4%对2%)和TNF-G/G(78%对66%)。96%的CRS患者至少有一个G等位基因。当分析与鼻窦炎相关的三基因变量时,发现SLCO1B1-TNFCYP1A2具有统计学差异,1/1-GG-UM的受试者比例更高(44.3%);和il1b - tnfcyp1a2分别具有CC-GG-UM(26%)、CT-GG-UM(19.8%)和CC-GG-NM(13.7%)的基因表型。鼻窦炎患者嗜酸性粒细胞计数较高(308.80 cell /mcL vs 263.14 cell /mcL), HDL水平较低(265.34 mg/dL vs 297.85 mg/dL)。SLCO1B1-TNF-CYP1A2和IL1B-TNF-CYP1A2三基因簇可能调节鼻窦炎的慢性。嗜酸性粒细胞增多症和高密度脂蛋白是参与炎症的因素,因此参与CRS的发展。
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引用次数: 0
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Current Pharmacogenomics and Personalized Medicine
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