Marine nepheloid layers are extensively distributed across the world's oceans and marginal seas, characterized by significantly high turbidity compared to adjacent layers. In this study, we measured four transects located at 6°N, 10°N, 18°N, and 113°E in the South China Sea (SCS), encompassing a total of 75 CTD stations each year, and conducted four sets of repeated measurements over a four-year period. Our findings indicate that the scale and concentration of Bottom Nepheloid Layer (BNL) and Intermediate Nepheloid Layer (INL) vary significantly across different subbasins and seasons. In the southwestern and northwestern subbasin of the SCS, BNL and multiple INLs persist year-round at different water depths. BNL is commonly observed on the continental slope with the INLs extending along the isopycnals, and both BNL and INLs always are stronger in summer. High turbidity has caused marked alterations in the isopycnal and isotherm structures of the water column, particularly near the slope. In the central basin of the SCS, multiple INLs also persist year-round, especially at water depths 400–1000 m. The changes in the water column by high turbidity in the central basin were weaker. The persistent presence of INLs indicates ongoing transport of particulate matter across the slope. Ocean currents and internal waves predominantly affect the slopes of the southwestern and northwestern subbasins, while the deeper central basin is primarily affected by the ocean currents. The interactions between internal waves or ocean currents and submarine topography contribute to the frequent occurrence of BNL and INLs around the seamounts. This paper aimed to provide a comprehensive analysis of the seasonal and spatial variability of BNLs and INLs in the deep SCS, serving as a reference for future research on the dynamic processes of marine ecological environment and associated source-sink systems.
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