{"title":"Single-cell RNA sequencing combined with single-cell genome-wide association study identifies SF3B4 as a hub gene in hepatocellular carcinoma progression.","authors":"Fujun Ma, Lihong Kang, Zhijian Ren, Yang Yang, Tong Shen, Haibo Yu","doi":"10.1007/s12672-026-04501-7","DOIUrl":"https://doi.org/10.1007/s12672-026-04501-7","url":null,"abstract":"","PeriodicalId":11148,"journal":{"name":"Discover. Oncology","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2026-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146194323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-14DOI: 10.1007/s12672-026-04559-3
Ying-Xue Song, Xiao-Lin Xia, Zhi-Ming Wu, Ye Yao, Jun-Yu Liang, Sheng-Jie Guo, Kai Yao, Hui Chang
{"title":"Integration of bulk and single-cell transcriptomic sequencing reveals the neutrophil heterogeneity in bladder cancer and establishes a prognostic model.","authors":"Ying-Xue Song, Xiao-Lin Xia, Zhi-Ming Wu, Ye Yao, Jun-Yu Liang, Sheng-Jie Guo, Kai Yao, Hui Chang","doi":"10.1007/s12672-026-04559-3","DOIUrl":"10.1007/s12672-026-04559-3","url":null,"abstract":"","PeriodicalId":11148,"journal":{"name":"Discover. Oncology","volume":" ","pages":"329"},"PeriodicalIF":2.9,"publicationDate":"2026-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12917091/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146194315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-14DOI: 10.1007/s12672-026-04518-y
Liangbin Gao, Bin Wang, Jiamin Wang, Yu Chen, Ning Li, Wei An, Zhilin Li
{"title":"Immunogenomic signatures defining the molecular subtypes of head and neck cancer.","authors":"Liangbin Gao, Bin Wang, Jiamin Wang, Yu Chen, Ning Li, Wei An, Zhilin Li","doi":"10.1007/s12672-026-04518-y","DOIUrl":"https://doi.org/10.1007/s12672-026-04518-y","url":null,"abstract":"","PeriodicalId":11148,"journal":{"name":"Discover. Oncology","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2026-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146197307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-13DOI: 10.1007/s12672-026-04636-7
Abinash Nayak
{"title":"Deciphering the contribution of 5'-tiRNA- Lys-CTT as an emerging early diagnostic biomarker for hepatocellular carcinoma.","authors":"Abinash Nayak","doi":"10.1007/s12672-026-04636-7","DOIUrl":"10.1007/s12672-026-04636-7","url":null,"abstract":"","PeriodicalId":11148,"journal":{"name":"Discover. Oncology","volume":"17 1","pages":"298"},"PeriodicalIF":2.9,"publicationDate":"2026-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12905044/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146178193","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: A thorough investigation into the clinicopathologic features and long-term prognosis of early-onset gastroenteropancreatic neuroendocrine tumors (GEP-NETs) is lacking. This study leverages the Surveillance, Epidemiology, and End Results (SEER) database to comprehensively analyze these aspects, addressing this critical knowledge gap.
Methods: Patients diagnosed with GEP-NETs between 2010 and 2020 were categorized into early-onset (≤ 50 years) and late-onset (> 50 years) groups. Clinicopathological features were compared, and propensity score matching (PSM) was applied to mitigate confounding. Kaplan-Meier curves and Cox regression analysis were utilized to evaluate overall survival (OS) and cancer-specific survival (CSS).
Results: Among 35,342 patients (9,968 early-onset; 25,374 late-onset), both groups exhibited rising annual incidence. Early-onset GEP-NETs were more frequently located in the colorectum (66.8% vs. 40.0%) and had higher surgical rates (86.1% vs. 76.1%). They demonstrated superior OS and CSS compared to late-onset counterparts (P < 0.001), confirmed by 1:1 PSM. Lymph node metastasis was lower in early-onset GEP-NETs overall (11.9% vs. 19.7%), but paradoxically higher in small intestine subsets (53.1% vs. 46.9%). Distant metastasis rates were lower in early-onset tumors (5.5% vs. 9.9%), particularly in colorectum (1.2% vs. 3.2%). Predictors of lymph node metastasis in early-onset cases included race, marital status, tumor grade, primary site, T stage, and M stage; predictors of distant metastasis encompassed tumor grade, primary site, T stage, and N stage. Five-year OS and CSS rates for early-onset GEP-NETs were 95.0% and 97.4%, respectively. Multivariate analysis identified marital status, tumor grade, primary site, NM stage, surgery, and chemotherapy as independent OS predictors; tumor grade, primary site, NM stage, surgery, and chemotherapy independently predicted CSS.
Conclusions: Early-onset GEP-NETs exhibit favorable survival and reduced metastasis rates relative to late-onset tumors, underscoring distinct clinical outcomes and warranting tailored management strategies.
{"title":"Clinicopathologic features and long term prognosis of early onset gastroenteropancreatic neuroendocrine tumors.","authors":"Yin Shen, Zhi Zhang, Lingchao Kong, Yan Liu, Yimin Ma, Zhenguo Qiao, Guirong Qian","doi":"10.1007/s12672-026-04644-7","DOIUrl":"https://doi.org/10.1007/s12672-026-04644-7","url":null,"abstract":"<p><strong>Background: </strong>A thorough investigation into the clinicopathologic features and long-term prognosis of early-onset gastroenteropancreatic neuroendocrine tumors (GEP-NETs) is lacking. This study leverages the Surveillance, Epidemiology, and End Results (SEER) database to comprehensively analyze these aspects, addressing this critical knowledge gap.</p><p><strong>Methods: </strong>Patients diagnosed with GEP-NETs between 2010 and 2020 were categorized into early-onset (≤ 50 years) and late-onset (> 50 years) groups. Clinicopathological features were compared, and propensity score matching (PSM) was applied to mitigate confounding. Kaplan-Meier curves and Cox regression analysis were utilized to evaluate overall survival (OS) and cancer-specific survival (CSS).</p><p><strong>Results: </strong>Among 35,342 patients (9,968 early-onset; 25,374 late-onset), both groups exhibited rising annual incidence. Early-onset GEP-NETs were more frequently located in the colorectum (66.8% vs. 40.0%) and had higher surgical rates (86.1% vs. 76.1%). They demonstrated superior OS and CSS compared to late-onset counterparts (P < 0.001), confirmed by 1:1 PSM. Lymph node metastasis was lower in early-onset GEP-NETs overall (11.9% vs. 19.7%), but paradoxically higher in small intestine subsets (53.1% vs. 46.9%). Distant metastasis rates were lower in early-onset tumors (5.5% vs. 9.9%), particularly in colorectum (1.2% vs. 3.2%). Predictors of lymph node metastasis in early-onset cases included race, marital status, tumor grade, primary site, T stage, and M stage; predictors of distant metastasis encompassed tumor grade, primary site, T stage, and N stage. Five-year OS and CSS rates for early-onset GEP-NETs were 95.0% and 97.4%, respectively. Multivariate analysis identified marital status, tumor grade, primary site, NM stage, surgery, and chemotherapy as independent OS predictors; tumor grade, primary site, NM stage, surgery, and chemotherapy independently predicted CSS.</p><p><strong>Conclusions: </strong>Early-onset GEP-NETs exhibit favorable survival and reduced metastasis rates relative to late-onset tumors, underscoring distinct clinical outcomes and warranting tailored management strategies.</p>","PeriodicalId":11148,"journal":{"name":"Discover. Oncology","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2026-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146178068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-13DOI: 10.1007/s12672-026-04641-w
Lihua Meng, Yuexuan Xu, Zhaoxuan Lin, Yang Shen, Youzhong Zhang, Shili Liu
Alterations in the vaginal microbiota contribute to the pathogenesis of cervical neoplasia. However, the distinctions in microbiota changes related to different human papillomavirus (HPV) subtypes, as well as the variation in gut microbiota, have not been fully explored. In this research, we endeavored to explore the shifts in the vaginal and intestinal microbiota in correlation with the advancement of cervical neoplasia and HPV infection. A total of 578 vaginal and intestinal cross-sectional specimens were collected from 348 subjects and subjected to 16 S rRNA sequencing. Statistical analyses were performed using R language, and Student's t-test was employed to assess the significance of differences. Both within and between, sample diversity of the vaginal and intestinal microbiota exhibited substantial alterations across cervical intraepithelial neoplasia (CIN) stages and cervical carcinoma. The vaginal genera Lactobacillus, Enterococcus, Peptoniphilus, Atobium, Anerococcus, and Veillonella were associated with different CIN stages and cervical cancer type, whereas Allisonella, Lachnospiracae, Lactobacillus, Staphylococcus, and Sellimonas were associated with varying HPV types. A Random Forest-driven classifier highlighted the predictive potential of differential bacteria in cervical neoplasia and HPV infection, with intestinal bacteria showing higher predictive accuracy in certain instances. Specifically, the accuracy of differentiating CIN I from CIN III was superior for the intestinal bacterial model compared to the vaginal bacterial model (85.52% vs. 83.33%). The model also demonstrated high accuracy in predicting HPV infection, particularly in distinguishing HPV-16 from HPV-18 and HPV-58, with AUC values of 81.61% and 83.07%, respectively, compared to less than 70% for vaginal bacteria. Our findings reveal the intricate interplay among cervical neoplasia, HPV infection, and microbiota, with potential diagnostic and therapeutic implications.
阴道微生物群的改变与宫颈肿瘤的发病机制有关。然而,与不同人乳头瘤病毒(HPV)亚型相关的微生物群变化的差异以及肠道微生物群的变化尚未得到充分探讨。在本研究中,我们试图探讨阴道和肠道微生物群的变化与宫颈瘤变和HPV感染进展的关系。从348名受试者中采集578份阴道和肠道横断面标本,并进行16s rRNA测序。采用R语言进行统计分析,采用Student’st检验评估差异的显著性。在宫颈上皮内瘤变(CIN)和宫颈癌分期之间,阴道和肠道微生物群的样本多样性都表现出实质性的变化。阴道属乳酸菌属、肠球菌属、嗜胃杆菌属、阿托菌属、无球菌属和细孔菌属与不同的CIN分期和宫颈癌类型相关,而Allisonella、Lachnospiracae、乳酸菌属、葡萄球菌属和Sellimonas与不同的HPV类型相关。随机森林驱动的分类器强调了宫颈肿瘤和HPV感染中不同细菌的预测潜力,肠道细菌在某些情况下显示出更高的预测准确性。具体而言,肠道细菌模型鉴别CIN I和CIN III的准确率优于阴道细菌模型(85.52% vs. 83.33%)。该模型在预测HPV感染方面也显示出很高的准确性,特别是在区分HPV-16与HPV-18和HPV-58方面,AUC值分别为81.61%和83.07%,而阴道细菌的AUC值低于70%。我们的研究结果揭示了宫颈肿瘤、HPV感染和微生物群之间复杂的相互作用,具有潜在的诊断和治疗意义。
{"title":"Microbiota dynamics in HPV-Infected individuals: implications for cervical neoplasia development.","authors":"Lihua Meng, Yuexuan Xu, Zhaoxuan Lin, Yang Shen, Youzhong Zhang, Shili Liu","doi":"10.1007/s12672-026-04641-w","DOIUrl":"https://doi.org/10.1007/s12672-026-04641-w","url":null,"abstract":"<p><p>Alterations in the vaginal microbiota contribute to the pathogenesis of cervical neoplasia. However, the distinctions in microbiota changes related to different human papillomavirus (HPV) subtypes, as well as the variation in gut microbiota, have not been fully explored. In this research, we endeavored to explore the shifts in the vaginal and intestinal microbiota in correlation with the advancement of cervical neoplasia and HPV infection. A total of 578 vaginal and intestinal cross-sectional specimens were collected from 348 subjects and subjected to 16 S rRNA sequencing. Statistical analyses were performed using R language, and Student's t-test was employed to assess the significance of differences. Both within and between, sample diversity of the vaginal and intestinal microbiota exhibited substantial alterations across cervical intraepithelial neoplasia (CIN) stages and cervical carcinoma. The vaginal genera Lactobacillus, Enterococcus, Peptoniphilus, Atobium, Anerococcus, and Veillonella were associated with different CIN stages and cervical cancer type, whereas Allisonella, Lachnospiracae, Lactobacillus, Staphylococcus, and Sellimonas were associated with varying HPV types. A Random Forest-driven classifier highlighted the predictive potential of differential bacteria in cervical neoplasia and HPV infection, with intestinal bacteria showing higher predictive accuracy in certain instances. Specifically, the accuracy of differentiating CIN I from CIN III was superior for the intestinal bacterial model compared to the vaginal bacterial model (85.52% vs. 83.33%). The model also demonstrated high accuracy in predicting HPV infection, particularly in distinguishing HPV-16 from HPV-18 and HPV-58, with AUC values of 81.61% and 83.07%, respectively, compared to less than 70% for vaginal bacteria. Our findings reveal the intricate interplay among cervical neoplasia, HPV infection, and microbiota, with potential diagnostic and therapeutic implications.</p>","PeriodicalId":11148,"journal":{"name":"Discover. Oncology","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2026-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146178158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-13DOI: 10.1007/s12672-026-04587-z
Usamah Sayed, Waleed K Abdulsahib, Ihsan Khudhair Jasim, H Malathi, Priya Priyadarshini Nayak, D Alex Anand, Gunjan Mukherjee, Aashna Sinha, Sadridin Eshkaraev
This comprehensive review explores the critical intersection of Synthetic Lethality (SL) and DNA Damage Response (DDR) targeting within Cancer Stem Cells (CSCs), a subpopulation central to tumor initiation, metastasis, and therapeutic resistance. CSCs exhibit unique biological properties, including enhanced DNA repair mechanisms and metabolic plasticity, rendering them intrinsically resistant to conventional therapies. The fundamental mechanisms of DDR pathways and their dysregulation in cancer are delineated, highlighting how these vulnerabilities can be exploited through SL. The review synthesizes current preclinical and clinical advancements in targeting CSCs via DDR inhibitors, including PARP, ATR, ATM, and DNA-PKcs inhibitors, as well as emerging SL targets. Furthermore, advanced therapeutic modalities such as small molecule inhibitors, antibody-drug conjugates, CAR cell therapies, glycan-based approaches, and nanoparticle delivery systems tailored for CSC elimination are discussed. Finally, persistent challenges, including CSC heterogeneity, the immunosuppressive tumor microenvironment, on-target/off-tumor toxicities, and translational hurdles, are addressed, emphasizing the transformative potential of integrated diagnostic platforms leveraging AI, liquid biopsy, multi-omics, and single-cell profiling to usher in a new era of precision oncology for durable cancer control.
{"title":"Synthetic lethality and DNA damage response targeting in cancer stem cells: a comprehensive review.","authors":"Usamah Sayed, Waleed K Abdulsahib, Ihsan Khudhair Jasim, H Malathi, Priya Priyadarshini Nayak, D Alex Anand, Gunjan Mukherjee, Aashna Sinha, Sadridin Eshkaraev","doi":"10.1007/s12672-026-04587-z","DOIUrl":"https://doi.org/10.1007/s12672-026-04587-z","url":null,"abstract":"<p><p>This comprehensive review explores the critical intersection of Synthetic Lethality (SL) and DNA Damage Response (DDR) targeting within Cancer Stem Cells (CSCs), a subpopulation central to tumor initiation, metastasis, and therapeutic resistance. CSCs exhibit unique biological properties, including enhanced DNA repair mechanisms and metabolic plasticity, rendering them intrinsically resistant to conventional therapies. The fundamental mechanisms of DDR pathways and their dysregulation in cancer are delineated, highlighting how these vulnerabilities can be exploited through SL. The review synthesizes current preclinical and clinical advancements in targeting CSCs via DDR inhibitors, including PARP, ATR, ATM, and DNA-PKcs inhibitors, as well as emerging SL targets. Furthermore, advanced therapeutic modalities such as small molecule inhibitors, antibody-drug conjugates, CAR cell therapies, glycan-based approaches, and nanoparticle delivery systems tailored for CSC elimination are discussed. Finally, persistent challenges, including CSC heterogeneity, the immunosuppressive tumor microenvironment, on-target/off-tumor toxicities, and translational hurdles, are addressed, emphasizing the transformative potential of integrated diagnostic platforms leveraging AI, liquid biopsy, multi-omics, and single-cell profiling to usher in a new era of precision oncology for durable cancer control.</p>","PeriodicalId":11148,"journal":{"name":"Discover. Oncology","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2026-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146178143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}