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Proteomic dissection of viral pathogenesis. 病毒发病机制的蛋白质组学解剖。
Pub Date : 2008-01-01 DOI: 10.1159/000317143
H C Liu, J Hicks, D Yoo

Many factors play into the complexity of viral pathogenesis. Understanding viral pathogenesis is key to developing vaccines and treatments for viral diseases. One emerging area of research is proteomics, which is the study of the protein complement and functions of the genome. Many different proteomic approaches have been utilized by researchers worldwide to further elucidate viral pathogenesis. For example, a high throughput MALDI-MS approach was recently employed to study the antigenicity of the influenza virus. Another study utilized MALDI-TOF MS and liquid chromatography MS/MS of proteins present in lipid droplets of hepatoma cell lines to identify proteins involved in the pathogenesis of hepatitis C virus that contribute to its carcinogenic properties. In conjugation with MS, yeast two-hybrid systems have also been shown to be useful in identifying potential host receptors of various viruses as well as revealing the interaction of viral proteins with other host proteins and viral proteins. In this review, the focus is on various proteomic approaches to dissecting the mechanisms of viral pathogenesis.

许多因素导致了病毒发病机制的复杂性。了解病毒的发病机制是开发疫苗和治疗病毒性疾病的关键。一个新兴的研究领域是蛋白质组学,它是对蛋白质补体和基因组功能的研究。许多不同的蛋白质组学方法已经被世界各地的研究人员用来进一步阐明病毒的发病机制。例如,最近采用了高通量MALDI-MS方法来研究流感病毒的抗原性。另一项研究利用MALDI-TOF质谱和液相色谱质谱对肝癌细胞系脂滴中存在的蛋白质进行了鉴定,以确定参与丙型肝炎病毒发病机制的蛋白质,这些蛋白质有助于其致癌特性。在与质谱结合的过程中,酵母双杂交系统也被证明可用于识别各种病毒的潜在宿主受体,以及揭示病毒蛋白与其他宿主蛋白和病毒蛋白的相互作用。在这篇综述中,重点是各种蛋白质组学方法来解剖病毒发病机制。
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引用次数: 10
The future impact of animal genomics in animal health research. 动物基因组学在动物健康研究中的未来影响。
Pub Date : 2008-01-01 DOI: 10.1159/000317139
M-H Pinard-Van Der Laan, C G Gay

The first International Symposium on Animal Genomics for Animal Health (AGAH) provided an excellent venue for scientists working in the field of genomics to interact with animal health experts. This paper provides an introduction to genome-enabled tools and highlights some of the research projects in the AGAH proceedings. A brief review of animal genomes, the next generation of genetic markers, and the versatility of genome-enabled technologies and their many applications are discussed.

首届动物基因组学促进动物健康国际研讨会(AGAH)为基因组学领域的科学家与动物健康专家进行互动提供了一个绝佳的场所。本文介绍了基因组工具,并重点介绍了AGAH会议上的一些研究项目。简要回顾动物基因组,下一代遗传标记,基因组技术的多功能性及其许多应用进行了讨论。
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引用次数: 1
The rabies situation in Western Europe. 西欧的狂犬病情况。
Pub Date : 2008-01-01
A I Wandeler

This analysis of the present rabies situation in Western Europe is based on completed questionnaires from 16 countries. The questionnaire focuses on the years 2005 and 2006. Additional information was obtained from the Rabies Bulletin Europe, and from the OIE's publication on "Historical Perspective of Rabies in Europe and the Mediterranean Basin". Rabies in domestic animals and wild carnivores has become very rare in Western Europe. Only Germany reported a low number of rabid foxes for 2005. Bat rabies was observed in four countries. One imported human case was seen in the UK, while Germany reported four cases in transplant recipients. Wildlife vaccination campaigns were conducted by Austria, Germany and France. Reporting of human post-exposure prophylaxis is inconsistent due the lack of information. Similarly, data on domestic animal rabies prophylaxis seem to be difficult to collect.

对西欧目前狂犬病情况的分析是基于来自16个国家的已完成问卷。问卷调查的重点是2005年和2006年。从《欧洲狂犬病公报》和世界动物卫生组织关于“欧洲和地中海盆地狂犬病的历史展望”的出版物中获得了更多信息。在西欧,家养动物和野生食肉动物的狂犬病已经变得非常罕见。2005年只有德国报告了少量的狂犬病狐狸。在四个国家观察到蝙蝠狂犬病。在英国发现了一例输入性人类病例,而德国报告了4例移植患者。奥地利、德国和法国开展了野生动物疫苗接种运动。由于缺乏信息,人类接触后预防的报告不一致。同样,关于家畜狂犬病预防的数据似乎也很难收集。
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引用次数: 0
Ten-day observation of live rabies suspected dogs. 对怀疑患有狂犬病的活犬进行为期十天的观察。
Pub Date : 2008-01-01
V Tepsumethanon, H Wilde, V Sitprija

This study aimed at analyzing a ten-day observation period of rabies suspected dogs and cats according to six criteria. Dogs and cats suspected of being rabid were brought for observation when they had either bitten a person or another animal or when abnormal behaviour or unusual illness was observed. Between 1985 and 2005, retrospective and prospective data from 1,222 dogs and 303 cats was collected during the ten-day observation period. If an animal had died, brain examination using fluorescent antibody testing was routinely performed. If an animal had survived for > or =10 days, it was released to its owner or transferred to the municipal dog shelter. A total of 644 dogs and 58 cats found rabid died within 10 days of observation. In addition, for 208 dogs confirmed rabid with laboratory tests between 1997 and 2005, six criteria were analysed from the day of submission. This experience with the implemented 10-day observation period confirms the WHO recommendation on identifying suspected rabid dogs or cats under veterinary supervision following a human exposure.

本研究旨在根据6项标准对10天的疑似狂犬病犬猫观察期进行分析。当怀疑患有狂犬病的狗和猫咬过人或其他动物,或观察到异常行为或异常疾病时,将它们带到观察。从1985年到2005年,在10天的观察期间,收集了1222只狗和303只猫的回顾性和前瞻性数据。如果动物已经死亡,则常规使用荧光抗体测试进行脑部检查。如果一只动物存活了>或=10天,它就会被释放给它的主人或转移到市政狗收容所。共有644只狗和58只猫在观察后10天内死亡。此外,对1997年至2005年期间经实验室检测证实患有狂犬病的208只狗,从提交之日起分析了6项标准。实施的10天观察期的这一经验证实了世卫组织关于在人类接触后在兽医监督下识别疑似患狂犬病的狗或猫的建议。
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引用次数: 0
Experimental infection of foxes with European bat lyssaviruses type-1 and -2. 1型和2型欧洲蝙蝠溶血病毒对狐狸的实验性感染。
Pub Date : 2008-01-01
E Picard-Meyer, S M Brookes, J Barrat, E Litaize, C Patron, M Biarnais, D M Healy, L Johnson, A R Fooks, F Cliquet

Experimental studies have been undertaken to assess the susceptibility of silver foxes to bat variants of rabies virus, namely European Bat Lyssaviruses (EBLVs). Both EBLV-1 and EBLV-2 have been isolated in European bats since 1954, in Eptesicus serotinus and Myotis species, respectively. Since 2000, the number of reported cases has increased largely due to the improvement of the surveillance of bat rabies virus throughout Europe. Although over >800 EBLVs cases have been reported in bats in Europe, EBLV-1 and -2 viruses are rarely reported to infect humans and terrestrial animals. The study presented here shows that the sensitivity of silver foxes is low when infected with EBLVs via the intramuscular route; in contrast all animals infected via intracranial inoculation succumbed to the experimental challenge. The mortality rate was 100% for both EBLV-1 (approximately 4.5 log) and EBLV-2 (approximately 3.0 log). This data suggests that the susceptibility of foxes to EBLV-1 and EBLV-2 is low and that the transmission (spillover) and adaptation of EBLVs from a bat to a fox may be theoretically possible but unlikely.

已经进行了实验研究,以评估银狐对蝙蝠狂犬病病毒变种,即欧洲蝙蝠溶血病毒(EBLVs)的易感性。EBLV-1和EBLV-2自1954年以来在欧洲蝙蝠中分别从Eptesicus sertinus和Myotis种中分离出来。自2000年以来,报告病例数的增加主要是由于整个欧洲对蝙蝠狂犬病毒的监测有所改善。尽管在欧洲蝙蝠中报告了超过800例eblv病例,但很少报告感染人类和陆生动物的EBLV-1和-2病毒。本研究表明,银狐通过肌内途径感染eblv的敏感性较低;相反,所有通过颅内接种感染的动物都屈服于实验挑战。EBLV-1(约4.5 log)和EBLV-2(约3.0 log)的死亡率均为100%。这一数据表明,狐狸对EBLV-1和EBLV-2的易感性较低,eblv从蝙蝠到狐狸的传播(溢出)和适应在理论上是可能的,但不太可能。
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引用次数: 0
Finnish-Russian programme for the control of rabies (2005-2010). 芬兰-俄罗斯狂犬病控制规划(2005-2010年)。
Pub Date : 2008-01-01
A E Metlin, S S Rybakov, K N Gruzdev, V V Mikhalishin, A Huovilainen, E Neuvonen

The Finnish-Russian collaboration on rabies control began in 2000. This data summarizes the results of the scientific part of the programme, including rabies monitoring in Russia and the molecular epidemiological studies with field viruses.

芬兰和俄罗斯在狂犬病控制方面的合作始于2000年。这些数据总结了该方案科学部分的结果,包括俄罗斯的狂犬病监测和野外病毒分子流行病学研究。
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引用次数: 0
The use of RNAi and transgenics to develop viral disease resistant livestock. 利用RNAi和转基因技术培育抗病毒家畜。
Pub Date : 2008-01-01 DOI: 10.1159/000317188
T G Wise, D S Schafer, J W Lowenthal, T J Doran

The possibility of genetically engineering poultry to make them resistant to avian influenza is attracting attention and has now become a real possibility with improved methods for genetic modification and the emergence of RNAi as an antiviral strategy. In order to test this possibility, we have generated transgenic mice that express RNAi molecules targeting a conserved region of the influenza A NP gene and are testing these mice for resistance to influenza infection. Transgenes were initially developed that express short hairpin RNAs (shRNAs) targeting multiple influenza A viral genes. The shRNAs were tested for inhibition of H1N1 PR8 virus in vitro. Two potent shRNAs that target the NP and PA genes were chosen for lentiviral mediated generation of transgenic mice. Transgenic founders for the NP shRNA construct and also a negative control shRNAtargeting EGFP were generated. The constitutive expression of the shRNA molecules in a range of tissue types including lung, was confirmed and so far stable transmission of the RNAi transgenes from the F0 to F3 generation has been observed. Resistance to influenza infection in these transgenic mice is now being confirmed.

对家禽进行基因工程以使其对禽流感具有抵抗力的可能性正在引起人们的注意,随着基因修饰方法的改进和RNAi作为抗病毒策略的出现,这种可能性现在已经成为一种真正的可能性。为了测试这种可能性,我们已经产生了表达RNAi分子靶向流感a NP基因保守区域的转基因小鼠,并正在测试这些小鼠对流感感染的抵抗力。转基因最初是通过表达针对多种甲型流感病毒基因的短发夹rna (shRNAs)而开发的。在体外测试了这些shrna对H1N1 PR8病毒的抑制作用。选择了两个靶向NP和PA基因的强效shrna用于慢病毒介导的转基因小鼠的产生。产生了NP shRNA构建物的转基因奠基物和一个阴性对照的靶向EGFP的shRNA。shRNA分子在包括肺在内的一系列组织类型中的组成性表达已被证实,到目前为止,RNAi转基因从F0代到F3代的稳定传播已被观察到。这些转基因小鼠对流感感染的抵抗力现已得到证实。
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引用次数: 21
Bovine viral diarrhoea virus infection alters global transcription profiles in bovine endothelial cells. 牛病毒性腹泻病毒感染改变了牛内皮细胞的全局转录谱。
Pub Date : 2008-01-01 DOI: 10.1159/000317148
J D Neill, J F Ridpath, A Lange, R L Zuerner

Bovine viral diarrhoea viruses (BVDV) are significant pathogens of cattle worldwide. These viruses exist in both non-cytopathic and cytopathic biotypes. Non-cytopathic BVDV can establish persistent lifelong infections in cattle and are a frequent contaminant of biological reagents such as cell cultures and foetal bovine serum. We identified commercially available bovine aortic endothelial cells (BAECs) contaminated with BVDV. In this study, to determine if BVDV alters endothelial gene transcription patterns, serial analysis of gene expression (SAGE) was used to compare gene expression profiles from uninfected and BVDV contaminated BAEC. SAGE is an open ended, quantitative method for characterizing global patterns of transcription. Comparison of expression profiles of BVDV-contaminated and noninfected cells revealed significant increases in the transcription of many genes including P-selectin, tryptophan tRNA synthetase and prostaglandin D2 synthase. These changes were validated by real-time PCR. Additionally, real-time PCR demonstrated that the response to LPS and dsRNA by contaminated cells, as well as cells acutely infected with noncytopathic BVDV, is altered. The altered response may be through the high level of expression of A20 and inhibition of activation of NF-kappaB. BAECs are commonly used as a model to study endothelial cell function in many different systems. As shown here, transcriptional and probable protein changes resulting from BVDV infection significantly alter cellular responses and may have a profound impact on experimental outcome. Transcriptomic analysis provided the initial clues leading to the characterization of this altered function.

牛病毒性腹泻病毒(BVDV)是世界范围内牛的重要病原体。这些病毒存在于非细胞病变和细胞病变两种生物型中。非细胞病变BVDV可以在牛中建立持续的终身感染,并且是细胞培养物和胎牛血清等生物试剂的常见污染物。我们鉴定了市售的牛主动脉内皮细胞(BAECs)被BVDV污染。在这项研究中,为了确定BVDV是否会改变内皮基因的转录模式,我们使用了基因表达序列分析(SAGE)来比较未感染和BVDV污染的BAEC的基因表达谱。SAGE是一种开放式的定量方法,用于表征转录的全球模式。比较bvdv污染细胞和未感染细胞的表达谱,发现p -选择素、色氨酸tRNA合成酶和前列腺素D2合成酶等许多基因的转录显著增加。这些变化通过实时PCR验证。此外,real-time PCR显示,污染细胞以及急性感染非细胞病变性BVDV的细胞对LPS和dsRNA的反应发生了改变。这种改变的反应可能是通过高水平表达A20和抑制NF-kappaB的激活。baec通常被用作研究许多不同系统内皮细胞功能的模型。如本文所示,BVDV感染引起的转录和可能的蛋白质变化显著改变了细胞反应,并可能对实验结果产生深远影响。转录组学分析提供了导致这种改变的功能表征的初步线索。
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引用次数: 13
Porcine genome-wide gene expression in response to tetanus toxoid vaccine. 猪对破伤风类毒素疫苗应答的全基因组基因表达。
Pub Date : 2008-01-01 DOI: 10.1159/000317159
S Ponsuksili, E Murani, K Wimmers

The very early in vivo response to immune stimuli was studied using tetanus toxoid as a model antigen known to induce Th1 and Th2 responses. Eighteen weaning piglets were vaccinated subcutaneously with tetanus toxoid. Leukocyte RNAs were isolated from samplings before and 2, 4, 8, and 24 hours after vaccination. After competitive hybridization of a 13297 porcine 70-mer oligo microarray (Qiagen-Operon NRSP8), subsequent image analysis and normalization, the data was analysed using analyses of variance (ANOVA) to identify genes regulated due to vaccination (ANOVA, p < or = 0.05; corresponding to false discovery q < or = 0.12). Of 8240 probes representing genes expressed in leukocytes, 1289 genes showed differential expression. Results were exemplarily confirmed by real-time PCR. Holistic expression data was clustered to six prominent groups of genes with similar changes in expression patterns using a k-means algorithm. To get more insight into functional and structural components and impact of the genes represented in each cluster, the EASE score was used to identify Gene Ontology functional categories. The results showed that in vivo significant changes of expression profiles of peripheral blood mononuclear cells (PBMCs) occurred very early after immune stimuli. These alterations concerned genes of pathways related to immune response as well as other metabolic and regulatory pathways including ATP/energy metabolism, transcription, structural molecule activity, biosynthesis, and metabolism. The analysis reveals new functional candidate genes for traits related to immune responsiveness and also provides new insight into the interaction of immune response, and metabolic and endocrine status. This will facilitate a better understanding of the relationship between immune and performance traits.

使用破伤风类毒素作为已知可诱导Th1和Th2应答的模型抗原,研究了机体对免疫刺激的早期应答。对18头断奶仔猪皮下接种破伤风类毒素。在接种前、接种后2、4、8和24小时从样品中分离白细胞rna。对13297只猪70-mer寡核苷酸微阵列(Qiagen-Operon NRSP8)进行竞争杂交、图像分析和归一化后,采用方差分析(ANOVA)对数据进行分析,以确定因接种疫苗而调节的基因(ANOVA, p < or = 0.05;对应于错误发现q <或= 0.12)。在8240个代表白细胞表达基因的探针中,1289个基因存在差异表达。结果通过实时荧光定量PCR得到验证。使用k-means算法将整体表达数据聚类到具有相似表达模式变化的六个突出基因组。为了更深入地了解每个集群中所代表的基因的功能和结构成分及其影响,我们使用EASE评分来识别基因本体的功能类别。结果表明,免疫刺激后,外周血单个核细胞(PBMCs)的表达谱在体内很早就发生了显著的变化。这些改变涉及与免疫反应相关的通路基因,以及其他代谢和调节通路,包括ATP/能量代谢、转录、结构分子活性、生物合成和代谢。该分析揭示了免疫应答相关性状的新功能候选基因,并为免疫应答与代谢和内分泌状态的相互作用提供了新的见解。这将有助于更好地理解免疫性状和性能性状之间的关系。
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引用次数: 11
Predicting genetic merit for mastitis and fertility in dairy cattle using genome wide selection and high density SNP screens. 利用基因组广泛选择和高密度SNP筛选预测奶牛乳腺炎和生育力的遗传优势。
Pub Date : 2008-01-01 DOI: 10.1159/000317163
H W Raadsma, G Moser, R E Crump, M S Khatkar, K R Zenger, J A L Cavanagh, R J Hawken, M Hobbs, W Barris, J Solkner, F W Nicholas, B Tier

Two novel methods for genome wide selection (GWS) were examined for predicting the genetic merit of animals using SNP information alone. A panel of 1,546 dairy bulls with reliable EBVs was genotyped for 15,380 SNPs that spanned the whole bovine genome. Two complexity reduction methods were used, partial least squares (PLS) and regression using a genetic algorithm (GAR), to find optimal solutions of EBVs against SNP information. Extensive internal cross-validation was used tofind the best predictive models followed by external validation (without direct use of the pedigree or SNP location). Both PLS and GAR provided both accurate fit to the training data set for somatic cell count (SCC) (max r = 0.83) and fertility (max r = 0.88) and showed an accuracy of prediction of r = 0.47 for SCC, and r = 0.72 for fertility. This is the first empirical demonstration that genome wide selection can account for a very high proportion of additive genetic variation in fitness traits whilst exploiting only a small percentage of available SNP information, without use of pedigree or QTL mapping. PLS was computationally more efficient than GAR.

研究了两种新的全基因组选择(GWS)方法,用于仅利用SNP信息预测动物的遗传优点。对1546头具有可靠ebv的奶牛进行了基因分型,对跨越整个牛基因组的15380个snp进行了分型。利用偏最小二乘法(PLS)和遗传算法回归(GAR)两种复杂性降低方法,根据SNP信息找到ebv的最优解。广泛的内部交叉验证用于寻找最佳预测模型,然后进行外部验证(不直接使用谱系或SNP位置)。PLS和GAR均能准确拟合体细胞计数(SCC)(最大r = 0.83)和生育力(最大r = 0.88)的训练数据集,SCC和生育力的预测精度分别为r = 0.47和r = 0.72。这是第一个实证证明,基因组广泛选择可以解释非常高比例的适应性性状的加性遗传变异,同时只利用一小部分可用的SNP信息,而不使用系谱或QTL定位。PLS的计算效率高于GAR。
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引用次数: 14
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