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Infection biology of Salmonella enterica 肠炎沙门氏菌的感染生物学
Q1 Medicine Pub Date : 2024-01-04 DOI: 10.1128/ecosalplus.esp-0001-2023
Jing Han, Nesreen H. Aljahdali, Shaohua Zhao, Hailin Tang, H. Harbottle, Maria Hoffmann, Jonathan G. Frye, S. Foley
ABSTRACT Salmonella enterica is the leading cause of bacterial foodborne illness in the USA, with an estimated 95% of salmonellosis cases due to the consumption of contaminated food products. Salmonella can cause several different disease syndromes, with the most common being gastroenteritis, followed by bacteremia and typhoid fever. Among the over 2,600 currently identified serotypes/serovars, some are mostly host-restricted and host-adapted, while the majority of serotypes can infect a broader range of host species and are associated with causing both livestock and human disease. Salmonella serotypes and strains within serovars can vary considerably in the severity of disease that may result from infection, with some serovars that are more highly associated with invasive disease in humans, while others predominantly cause mild gastroenteritis. These observed clinical differences may be caused by the genetic make-up and diversity of the serovars. Salmonella virulence systems are very complex containing several virulence-associated genes with different functions that contribute to its pathogenicity. The different clinical syndromes are associated with unique groups of virulence genes, and strains often differ in the array of virulence traits they display. On the chromosome, virulence genes are often clustered in regions known as Salmonella pathogenicity islands (SPIs), which are scattered throughout different Salmonella genomes and encode factors essential for adhesion, invasion, survival, and replication within the host. Plasmids can also carry various genes that contribute to Salmonella pathogenicity. For example, strains from several serovars associated with significant human disease, including Choleraesuis, Dublin, Enteritidis, Newport, and Typhimurium, can carry virulence plasmids with genes contributing to attachment, immune system evasion, and other roles. The goal of this comprehensive review is to provide key information on the Salmonella virulence, including the contributions of genes encoded in SPIs and plasmids during Salmonella pathogenesis.
摘要 肠沙门氏菌是美国细菌性食源性疾病的主要病因,估计 95% 的沙门氏菌病病例是由于食用了受污染的食品所致。沙门氏菌可引起多种不同的疾病综合征,最常见的是肠胃炎,其次是菌血症和伤寒。在目前已确定的 2,600 多种血清型/血清变种中,有些血清型大多受宿主限制并适应宿主,而大多数血清型可感染更广泛的宿主物种,并与引起家畜和人类疾病有关。沙门氏菌血清型和血清型中的菌株在感染后可能导致的疾病严重程度上有很大差异,有些血清型与人类侵袭性疾病的关联度较高,而其他血清型则主要引起轻微的肠胃炎。这些观察到的临床差异可能是由血清型的基因构成和多样性造成的。沙门氏菌的毒力系统非常复杂,包含多个毒力相关基因,这些基因具有不同的功能,对沙门氏菌的致病性起着重要作用。不同的临床综合征与独特的毒力基因组有关,菌株所表现出的一系列毒力特征也往往不同。在染色体上,毒力基因通常聚集在称为沙门氏菌致病性岛(SPIs)的区域,这些区域散布在不同的沙门氏菌基因组中,编码在宿主体内粘附、入侵、生存和复制所必需的因子。质粒也可携带各种有助于沙门氏菌致病性的基因。例如,与人类重大疾病相关的几个血清型的菌株,包括 Choleraesuis、Dublin、Enteritidis、Newport 和 Typhimurium,都可能携带毒力质粒,其中的基因有助于附着、免疫系统逃避和其他作用。本综述旨在提供有关沙门氏菌毒力的关键信息,包括 SPIs 和质粒中编码的基因在沙门氏菌致病过程中的贡献。
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引用次数: 0
Research on phage λ: a lucky choice 噬菌体 λ 研究:幸运的选择
Q1 Medicine Pub Date : 2023-12-22 DOI: 10.1128/ecosalplus.esp-0014-2023
D. Lewis, S. Adhya
ABSTRACT Bacteriophage λ is a paradigm in the field of gene regulation and one of the best-understood systems in genetic regulatory biology. A so-called Genetic Switch determines the mechanisms by which λ transitions to its dual lifestyles—lytic or lysogenic. When λ initiates the lysogenic lifestyle, the phage-encoded CI repressor binds cooperatively to multi-partite operators in a defined pattern that autoregulates repression of phage lytic promoters as well as activation of the lysogenic promoter. The study of this genetic switch and related earlier research on phage λ revealed the main principles of gene expression and regulation in molecular biology. This article describes the underlying molecular details of λ lysogeny, as it is currently understood.
摘要 噬菌体 λ 是基因调控领域的典范,也是基因调控生物学中最易理解的系统之一。所谓的 "基因开关"(Genetic Switch)决定了λ向其双重生活方式(溶解性或溶酶性)过渡的机制。当 λ 开始溶解生活方式时,噬菌体编码的 CI 抑制剂会以一种确定的模式与多部分操作者合作结合,从而自动调节对噬菌体溶解启动子的抑制以及对溶解启动子的激活。对这种基因开关的研究以及早期对噬菌体λ的相关研究揭示了分子生物学中基因表达和调控的主要原理。本文介绍了目前所了解的λ溶菌酶发生的基本分子细节。
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引用次数: 0
DNA Segregation in Enterobacteria. 肠杆菌中的DNA分离。
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-05-09 DOI: 10.1128/ecosalplus.esp-0038-2020
François Cornet, Corentin Blanchais, Romane Dusfour-Castan, Alix Meunier, Valentin Quebre, Hicham Sekkouri Alaoui, François Boudsoq, Manuel Campos, Estelle Crozat, Catherine Guynet, Franck Pasta, Philippe Rousseau, Bao Ton Hoang, Jean-Yves Bouet

DNA segregation ensures that cell offspring receive at least one copy of each DNA molecule, or replicon, after their replication. This important cellular process includes different phases leading to the physical separation of the replicons and their movement toward the future daughter cells. Here, we review these phases and processes in enterobacteria with emphasis on the molecular mechanisms at play and their controls.

DNA分离确保细胞后代在复制后至少得到每个DNA分子或复制子的一个拷贝。这一重要的细胞过程包括导致复制子物理分离及其向未来子细胞运动的不同阶段。在这里,我们回顾这些阶段和过程在肠杆菌的重点是在发挥分子机制及其控制。
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引用次数: 0
Structure, Assembly, and Function of Flagella Responsible for Bacterial Locomotion. 细菌运动中鞭毛的结构、组装和功能。
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-06-01 DOI: 10.1128/ecosalplus.esp-0011-2023
Tohru Minamino, Miki Kinoshita

Many motile bacteria use flagella for locomotion under a variety of environmental conditions. Because bacterial flagella are under the control of sensory signal transduction pathways, each cell is able to autonomously control its flagellum-driven locomotion and move to an environment favorable for survival. The flagellum of Salmonella enterica serovar Typhimurium is a supramolecular assembly consisting of at least three distinct functional parts: a basal body that acts as a bidirectional rotary motor together with multiple force generators, each of which serves as a transmembrane proton channel to couple the proton flow through the channel with torque generation; a filament that functions as a helical propeller that produces propulsion; and a hook that works as a universal joint that transmits the torque produced by the rotary motor to the helical propeller. At the base of the flagellum is a type III secretion system that transports flagellar structural subunits from the cytoplasm to the distal end of the growing flagellar structure, where assembly takes place. In recent years, high-resolution cryo-electron microscopy (cryoEM) image analysis has revealed the overall structure of the flagellum, and this structural information has made it possible to discuss flagellar assembly and function at the atomic level. In this article, we describe what is known about the structure, assembly, and function of Salmonella flagella.

许多活动细菌利用鞭毛在各种环境条件下进行运动。由于细菌鞭毛受感觉信号转导通路的控制,每个细胞能够自主控制其鞭毛驱动的运动,并向有利于生存的环境移动。肠炎沙门氏菌血清型鼠伤寒沙门氏菌的鞭毛是一个由至少三个不同功能部分组成的超分子组装体:基体作为双向旋转马达和多个力发生器,每个力发生器作为跨膜质子通道,将质子通过通道的流动与扭矩产生耦合;推进器:作为产生推进力的螺旋推进器的细丝;还有一个钩子,作为万向节,将旋转电机产生的扭矩传递给螺旋螺旋桨。在鞭毛的底部是一个III型分泌系统,它将鞭毛结构亚基从细胞质运送到生长的鞭毛结构的远端,在那里进行组装。近年来,高分辨率冷冻电镜(cryoEM)图像分析揭示了鞭毛的整体结构,这些结构信息使得在原子水平上讨论鞭毛的组装和功能成为可能。在这篇文章中,我们描述了什么是已知的结构,组装和鞭毛沙门氏菌的功能。
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引用次数: 0
Characterizing the Pathogenic Potential of Crohn's Disease-Associated Adherent-Invasive Escherichia coli. 克罗恩病相关粘附侵袭性大肠杆菌致病潜力的鉴定。
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-05-17 DOI: 10.1128/ecosalplus.esp-0018-2022
Megan T Zangara, Lena Darwish, Brian K Coombes

The microbiome of Crohn's disease (CD) patients is composed of a microbial community that is considered dysbiotic and proinflammatory in nature. The overrepresentation of Enterobacteriaceae species is a common feature of the CD microbiome, and much attention has been given to understanding the pathogenic role this feature plays in disease activity. Over 2 decades ago, a new Escherichia coli subtype called adherent-invasive E. coli (AIEC) was isolated and linked to ileal Crohn's disease. Since the isolation of the first AIEC strain, additional AIEC strains have been isolated from both inflammatory bowel disease (IBD) patients and non-IBD individuals using the original in vitro phenotypic characterization methods. Identification of a definitive molecular marker of the AIEC pathotype has been elusive; however, significant advancements have been made in understanding the genetic, metabolic, and virulence determinants of AIEC infection biology. Here, we review the current knowledge of AIEC pathogenesis to provide additional, objective measures that could be considered in defining AIEC and their pathogenic potential.

克罗恩病(CD)患者的微生物组由一个微生物群落组成,该群落在自然界中被认为是失调和促炎的。肠杆菌科物种的过度代表性是CD微生物组的一个常见特征,人们非常重视了解这一特征在疾病活动中的致病作用。20多年前,一种名为粘附性侵袭性大肠杆菌(AIEC)的新型大肠杆菌亚型被分离出来,并与回肠克罗恩病有关。自从分离出第一株AIEC菌株以来,已经使用原始的体外表型表征方法从炎症性肠病(IBD)患者和非IBD个体中分离出另外的AIEC菌株。AIEC病理类型的确定分子标记物的鉴定一直难以捉摸;然而,在理解AIEC感染生物学的遗传、代谢和毒力决定因素方面取得了重大进展。在这里,我们回顾了目前对AIEC发病机制的了解,以提供额外的、客观的措施,可用于定义AIEC及其致病潜力。
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引用次数: 0
Structure, Assembly, and Function of Flagella Responsible for Bacterial Locomotion. 负责细菌运动的鞭毛的结构、组装和功能。
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-06-01 DOI: 10.1128/ecosalplus.esp-0011-2023
Tohru Minamino, Miki Kinoshita

Many motile bacteria use flagella for locomotion under a variety of environmental conditions. Because bacterial flagella are under the control of sensory signal transduction pathways, each cell is able to autonomously control its flagellum-driven locomotion and move to an environment favorable for survival. The flagellum of Salmonella enterica serovar Typhimurium is a supramolecular assembly consisting of at least three distinct functional parts: a basal body that acts as a bidirectional rotary motor together with multiple force generators, each of which serves as a transmembrane proton channel to couple the proton flow through the channel with torque generation; a filament that functions as a helical propeller that produces propulsion; and a hook that works as a universal joint that transmits the torque produced by the rotary motor to the helical propeller. At the base of the flagellum is a type III secretion system that transports flagellar structural subunits from the cytoplasm to the distal end of the growing flagellar structure, where assembly takes place. In recent years, high-resolution cryo-electron microscopy (cryoEM) image analysis has revealed the overall structure of the flagellum, and this structural information has made it possible to discuss flagellar assembly and function at the atomic level. In this article, we describe what is known about the structure, assembly, and function of Salmonella flagella.

许多运动细菌在各种环境条件下利用鞭毛进行运动。由于细菌鞭毛受感觉信号转导途径的控制,因此每个细胞都能自主控制鞭毛驱动的运动,并移动到有利于生存的环境中。Typhimurium 肠炎沙门氏菌的鞭毛是一个超分子组件,至少由三个不同的功能部分组成:一个基体,作为双向旋转电机和多个力发生器,每个力发生器都是一个跨膜质子通道,将质子流经通道与产生扭矩结合起来;一个丝状体,作为螺旋推进器,产生推进力;一个钩状体,作为万向接头,将旋转电机产生的扭矩传递给螺旋推进器。在鞭毛的基部有一个 III 型分泌系统,它将鞭毛结构亚基从细胞质运送到生长鞭毛结构的远端,并在那里进行组装。近年来,高分辨率冷冻电镜(cryoEM)图像分析揭示了鞭毛的整体结构,这些结构信息使得在原子水平上讨论鞭毛的组装和功能成为可能。在本文中,我们将介绍目前已知的沙门氏菌鞭毛的结构、组装和功能。
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引用次数: 0
The Mar, Sox, and Rob Systems. Mar、Sox和Rob系统。
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-04-04 DOI: 10.1128/ecosalplus.esp-0010-2022
Lon M Chubiz

Environments inhabited by Enterobacteriaceae are diverse and often stressful. This is particularly true for Escherichia coli and Salmonella during host association in the gastrointestinal systems of animals. There, E. coli and Salmonella must survive exposure to various antimicrobial compounds produced or ingested by their host. A myriad of changes to cellular physiology and metabolism are required to achieve this feat. A central regulatory network responsible for sensing and responding to intracellular chemical stressors like antibiotics are the Mar, Sox, and Rob systems found throughout the Enterobacteriaceae. Each of these distinct regulatory networks controls expression of an overlapping set of downstream genes whose collective effects result in increased resistance to a wide array of antimicrobial compounds. This collection of genes is known as the mar-sox-rob regulon. This review will provide an overview of the mar-sox-rob regulon and molecular architecture of the Mar, Sox, and Rob systems.

肠杆菌科的生存环境是多种多样的,而且往往压力很大。大肠杆菌和沙门氏菌在动物胃肠道系统中的宿主结合尤其如此。在那里,大肠杆菌和沙门氏菌必须在暴露于宿主产生或摄入的各种抗菌化合物中存活下来。细胞生理和新陈代谢的无数变化需要实现这一壮举。一个负责感知和响应细胞内化学应激源(如抗生素)的中央调控网络是在肠杆菌科中发现的Mar, Sox和Rob系统。这些不同的调控网络中的每一个都控制着一组重叠的下游基因的表达,这些基因的集体作用导致对多种抗菌化合物的抗性增加。这组基因被称为mar-sox-rob调控子。这篇综述将提供Mar - Sox - Rob调控和Mar, Sox和Rob系统的分子结构的概述。
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引用次数: 0
Repeat-Unit Elongations To Produce Bacterial Complex Long Polysaccharide Chains, an O-Antigen Perspective. 从 O 抗原的角度看重复单位延伸产生细菌复合长多糖链
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-01-09 DOI: 10.1128/ecosalplus.esp-0020-2022
Yaoqin Hong, Dalong Hu, Anthony D Verderosa, Jilong Qin, Makrina Totsika, Peter R Reeves

The O-antigen, a long polysaccharide that constitutes the distal part of the outer membrane-anchored lipopolysaccharide, is one of the critical components in the protective outer membrane of Gram-negative bacteria. Most species produce one of the structurally diverse O-antigens, with nearly all the polysaccharide components having complex structures made by the Wzx/Wzy pathway. This pathway produces repeat-units of mostly 3-8 sugars on the cytosolic face of the cytoplasmic membrane that is translocated by Wzx flippase to the periplasmic face and polymerized by Wzy polymerase to give long-chain polysaccharides. The Wzy polymerase is a highly diverse integral membrane protein typically containing 10-14 transmembrane segments. Biochemical evidence confirmed that Wzy polymerase is the sole driver of polymerization, and recent progress also began to demystify its interacting partner, Wzz, shedding some light to speculate how the proteins may operate together during polysaccharide biogenesis. However, our knowledge of how the highly variable Wzy proteins work as part of the O-antigen processing machinery remains poor. Here, we discuss the progress to the current understanding of repeat-unit polymerization and propose an updated model to explain the formation of additional short chain O-antigen polymers found in the lipopolysaccharide of diverse Gram-negative species and their importance in the biosynthetic process.

O 型抗原是一种长多糖,构成外膜锚定脂多糖的远端部分,是革兰氏阴性细菌保护性外膜的关键成分之一。大多数菌种都能产生一种结构多样的 O 型抗原,几乎所有多糖成分都具有由 Wzx/Wzy 途径产生的复杂结构。这种途径在细胞质膜的细胞膜面上产生主要由 3-8 种糖组成的重复单位,这些重复单位被 Wzx 翻转酶转运到细胞质周围,然后被 Wzy 聚合酶聚合成长链多糖。Wzy 聚合酶是一种高度多样化的整体膜蛋白,通常含有 10-14 个跨膜片段。生化证据证实,Wzy聚合酶是聚合的唯一驱动力,最近的研究进展也开始揭开其相互作用伙伴Wzz的神秘面纱,为推测这两种蛋白在多糖生物发生过程中如何协同运作提供了一些启示。然而,我们对高度可变的 Wzy 蛋白如何作为 O 抗原加工机制的一部分发挥作用仍然知之甚少。在此,我们讨论了目前对重复单位聚合的理解进展,并提出了一个最新模型,以解释在多种革兰氏阴性菌脂多糖中发现的额外短链O抗原聚合物的形成及其在生物合成过程中的重要性。
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引用次数: 0
DNA Segregation in Enterobacteria. 肠杆菌的 DNA 分离。
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-05-09 DOI: 10.1128/ecosalplus.esp-0038-2020
François Cornet, Corentin Blanchais, Romane Dusfour-Castan, Alix Meunier, Valentin Quebre, Hicham Sekkouri Alaoui, François Boudsoq, Manuel Campos, Estelle Crozat, Catherine Guynet, Franck Pasta, Philippe Rousseau, Bao Ton Hoang, Jean-Yves Bouet

DNA segregation ensures that cell offspring receive at least one copy of each DNA molecule, or replicon, after their replication. This important cellular process includes different phases leading to the physical separation of the replicons and their movement toward the future daughter cells. Here, we review these phases and processes in enterobacteria with emphasis on the molecular mechanisms at play and their controls.

DNA 分离可确保细胞复制后的后代至少获得每个 DNA 分子或复制子的一个拷贝。这一重要的细胞过程包括不同阶段,最终导致复制子的物理分离和向未来子细胞的移动。在这里,我们回顾了肠杆菌的这些阶段和过程,重点是其中的分子机制及其控制。
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引用次数: 0
The Mar, Sox, and Rob Systems. Mar、Sox 和 Rob 系统。
Q1 Medicine Pub Date : 2023-12-12 Epub Date: 2023-04-04 DOI: 10.1128/ecosalplus.esp-0010-2022
Lon M Chubiz

Environments inhabited by Enterobacteriaceae are diverse and often stressful. This is particularly true for Escherichia coli and Salmonella during host association in the gastrointestinal systems of animals. There, E. coli and Salmonella must survive exposure to various antimicrobial compounds produced or ingested by their host. A myriad of changes to cellular physiology and metabolism are required to achieve this feat. A central regulatory network responsible for sensing and responding to intracellular chemical stressors like antibiotics are the Mar, Sox, and Rob systems found throughout the Enterobacteriaceae. Each of these distinct regulatory networks controls expression of an overlapping set of downstream genes whose collective effects result in increased resistance to a wide array of antimicrobial compounds. This collection of genes is known as the mar-sox-rob regulon. This review will provide an overview of the mar-sox-rob regulon and molecular architecture of the Mar, Sox, and Rob systems.

肠杆菌科细菌栖息的环境多种多样,而且往往充满压力。大肠杆菌和沙门氏菌在动物胃肠道系统中与宿主结合时尤其如此。在那里,大肠杆菌和沙门氏菌必须在接触宿主产生或摄入的各种抗菌化合物后才能存活。为实现这一目标,细胞生理和新陈代谢需要发生大量变化。肠杆菌科细菌中的 Mar、Sox 和 Rob 系统是负责感知和应对抗生素等细胞内化学压力的核心调控网络。每个不同的调控网络都控制着一组重叠的下游基因的表达,这些基因的共同作用增强了对各种抗菌化合物的耐药性。这组基因被称为 mar-sox-rob 调节子。本综述将概述 mar-sox-rob 调节子以及 Mar、Sox 和 Rob 系统的分子结构。
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引用次数: 0
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