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Microfluidic Dielectrophoretic Platform for the Manipulation of Brucella abortus Bacteria: Toward Rapid Diagnostic Solutions 用于流产布鲁氏菌操作的微流控介电泳平台:走向快速诊断解决方案。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-13 DOI: 10.1002/elps.70055
Katherine Acuña-Umaña, Estefany García-Martínez, Marco Mairena-Salazar, Nazareth Ruiz-Villalobos, Caterina Guzmán-Verri, Karina Torres-Castro, Leonardo Lesser-Rojas

Brucellosis is a neglected zoonotic disease that continues to impact global public health and livestock economies, particularly in regions with limited diagnostic infrastructure. Its causative agent, Brucella abortus, is difficult to detect due to its intracellular lifestyle and the nonspecific symptoms it causes in humans. This study demonstrates the experimental application of dielectrophoresis (DEP) in a microfluidic device for the selective manipulation of polystyrene beads and inactivated B. abortus bacteria. By tuning the frequency and medium conductivity, reliable combined negative dielectrophoretic (nDEP) and hydrodynamic flow responses were achieved, leading to the deflection of bacterial cells across the microchannel within a critical vertical window for particle control. Distinct particle trajectories were observed under varying electric field conditions, confirming effective separation without the need for labels or biochemical markers, except for visual validation. This label-free strategy enables rapid sample processing and has the potential to be integrated into portable platforms for on-site diagnostics. The results highlight the feasibility of DEP-based approaches for pathogen separation and support their future implementation in brucellosis surveillance and point-of-care testing.

布鲁氏菌病是一种被忽视的人畜共患疾病,它继续影响全球公共卫生和畜牧业经济,特别是在诊断基础设施有限的地区。其病原体,流产布鲁氏菌,由于其在细胞内的生活方式和它在人类中引起的非特异性症状,很难检测到。本研究展示了在微流控装置中对聚苯乙烯微球和灭活的流产芽孢杆菌进行选择性操作的实验应用。通过调节频率和介质电导率,可以实现可靠的负介电泳(nDEP)和流体动力学相结合的响应,从而使细菌细胞在颗粒控制的关键垂直窗口内偏转穿过微通道。在不同的电场条件下观察到不同的粒子轨迹,确认有效的分离,不需要标签或生化标记,除了视觉验证。这种无标签策略可以实现快速样品处理,并有可能集成到现场诊断的便携式平台中。结果强调了基于depp的病原体分离方法的可行性,并支持其未来在布鲁氏菌病监测和护理点检测中实施。
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引用次数: 0
Editorial Board: Electrophoresis 21F25 编辑委员会:电泳21F25
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-07 DOI: 10.1002/elps.70056
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引用次数: 0
Recent Developments in Capillary and Microchip Electroseparations of Peptides (2023–mid 2025) 毛细管和微芯片电分离多肽的最新进展(2023- 2025年中期)。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-06 DOI: 10.1002/elps.70052
Václav Kašička

This review presents a comprehensive overview of the developments and applications of high-performance capillary and microchip electromigration methods (zone electrophoresis in a free solution or in sieving media, isotachophoresis, isoelectric focusing, affinity electrophoresis, electrokinetic chromatography, and electrochromatography) for analysis, microscale isolation, and physicochemical and biochemical characterization of peptides in the period from 2023 up to ca. the middle of 2025. Advances in the exploration of electromigration properties of peptides and various aspects of their analysis, such as sample preparation, sorption suppression, EOF regulation, and detection, are described. New developments in the particular CE methods are presented, and several types of their applications are reported. They include qualitative and quantitative analysis of synthetic or isolated peptides, determination of peptides in complex biomatrices, peptide profiling of biofluids and tissue extracts, and monitoring of chemical and enzymatic reactions and physicochemical changes of peptides. They also deal with amino acid and sequence analysis of peptides, peptide mapping of proteins, separation of stereoisomers of peptides, and their chiral analyses. In addition, micropreparative separations and physicochemical and biochemical characterizations of peptides and their interactions with other (bio)molecules by the above CE methods are described.

本文综述了从2023年到2025年中期,高性能毛细管和微芯片电迁移方法(自由溶液或筛分介质区带电泳、等速电泳、等电聚焦、亲和电泳、电动色谱和电色谱)在多肽分析、微尺度分离和理化生化表征方面的发展和应用。介绍了在探索多肽的电迁移特性及其分析的各个方面的进展,如样品制备,吸附抑制,EOF调节和检测。介绍了特定CE方法的新发展,并报道了几种类型的应用。它们包括合成或分离多肽的定性和定量分析,复杂生物基质中多肽的测定,生物流体和组织提取物的多肽谱分析,以及多肽的化学和酶促反应和理化变化的监测。他们还处理肽的氨基酸和序列分析,蛋白质的肽图谱,肽的立体异构体的分离,以及它们的手性分析。此外,通过上述CE方法描述了肽的微制备分离和物理化学和生化表征及其与其他(生物)分子的相互作用。
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引用次数: 0
Editorial Board: Electrophoresis 20F25 编辑委员会:电泳20F25
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-06 DOI: 10.1002/elps.70054
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引用次数: 0
CRISPR-Cas9-Targeted Nanopore Sequencing for STR Typing 靶向crispr - cas9的纳米孔测序用于STR分型。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-05 DOI: 10.1002/elps.70051
Ting-Ting Yang, Jia-Rong Zhang, Zi-Han Xie, Zi-Lin Ren, Meng-Yang Zhao, Wen-Jing Hu, Jiang-Wei Yan, Ming Ni

CRISPR-Cas9-targeted sequencing can enrich DNA regions of interest by directing the Cas9 protein to bind and cleave specific DNA sequences via single-guide RNA (sgRNA). It is interesting to explore the efficacy of using CRISPR-Cas9-targeted nanopore sequencing (referred to as Cas9-seq), a polymerase chain reaction (PCR)-free workflow, for forensic short tandem repeats (STR) profiling, and to compare it with the amplification-based approach. In this pilot study, we constructed a Cas9-seq method for profiling seven STR loci, including D18S51, FGA, TPOX, D16S539, vWA, CSF1PO, and TH01. With 3 µg DNA inputs from human NA12878 and 293T cell lines, we achieved 643.45- and 468.34-fold enrichment ratios of the sgRNA-targeted regions by using Cas9-seq, respectively. Compared to nanopore sequencing of PCR amplicon products (amplicon-seq) of the ForenSeq DNA Signature Prep kit, the Cas9-seq reads had an ultralow strand bias. However, surprisingly, Cas9-seq did not show advantages in allele balance and had higher noise in the reads. At the seven STR loci for the two samples, both Cas9-seq and amplicon-seq had three genotyping errors. Additionally, there were no false-positive single-nucleotide polymorphisms (SNPs) introduced by Cas9-seq, whereas amplicon-seq produced three. In sum, we conclude that the PCR-free Cas9-seq might not be favorable for forensic STR genotyping.

crispr -Cas9靶向测序可以通过单导RNA (single-guide RNA, sgRNA)引导Cas9蛋白结合和切割特定的DNA序列,从而丰富感兴趣的DNA区域。探索使用crispr - cas9靶向纳米孔测序(称为Cas9-seq),一种无聚合酶链反应(PCR)的工作流程,用于法医短串联重复序列(STR)分析的功效,并将其与基于扩增的方法进行比较,这是一项有趣的研究。在本初步研究中,我们构建了一种Cas9-seq方法来分析7个STR基因座,包括D18S51、FGA、TPOX、D16S539、vWA、CSF1PO和TH01。我们使用Cas9-seq技术,从人NA12878和293T细胞系中输入3µg DNA,分别获得了643.45倍和468.34倍的sgrna靶向区域富集率。与ForenSeq DNA Signature Prep试剂盒的PCR扩增子产物(amplicon-seq)的纳米孔测序相比,Cas9-seq读取具有超低链偏置。然而,令人惊讶的是,Cas9-seq在等位基因平衡方面没有表现出优势,并且在读取中具有更高的噪声。在两个样本的7个STR位点上,Cas9-seq和扩增子-seq都有3个基因分型错误。此外,Cas9-seq没有引入假阳性单核苷酸多态性(SNPs),而扩增子-seq则产生了3个。总之,我们得出结论,无pcr的Cas9-seq可能不利于法医STR基因分型。
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引用次数: 0
Editorial Board: Electrophoresis 19F25 编辑委员会:电泳19F25
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-29 DOI: 10.1002/elps.70053
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引用次数: 0
Polarization-Selective Dynamic Coupling: Electrorotation-Orbital Motion of Twin Colloids in Rotating Fields 偏振-选择动态耦合:旋转场中双胶体的电旋-轨道运动。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-25 DOI: 10.1002/elps.70050
Ye Tao, 陶冶, Rui Xue, 薛睿, Qisheng Wu, 武奇生, Binyu Wang, 王彬宇, Miao Fang, 方淼, Qingyu Ruan, 阮庆宇, Weiyu Liu, 刘维宇, Yukun Ren, 任玉坤

This study investigates dynamic electrohydrodynamic (EHD) interactions between two identical colloidal microspheres in rotating electric fields using a fully coupled three-dimensional transient model. Long-range dielectrophoretic (DEP) attraction drives radial convergence; upon near-contact, tangential EHD sliding further induces asynchronous co-field orbital revolution. Crucially, individual electrorotation (ER) not only retains its original direction but also maintains a stable rate—with the rate deviating by <5% from that of isolated particles, matching single-particle behavior. High-frequency DEP force polarity reversal establishes stable noncontact equilibria via short-range repulsion. Spectral analyses reveal collective dynamics (radial mobility, orbital motion) stem from rotating electric field-mediated gap modulation rather than altered particle polarization. This dynamic decoupling—governed by the Kramers–Kronig relationship between real (radial DEP) and imaginary (rotational ER) components of polarizability—enables independent positional and rotational control, opening new avenues for noncontact colloidal manipulation in microfluidic mixers and dynamically reconfigurable active matter systems, where conventional DEP-based approaches are limited by coupled dynamics.

本研究利用完全耦合的三维瞬态模型研究了两个相同的胶体微球在旋转电场中的动态电流体动力学(EHD)相互作用。远距离介电泳(DEP)吸引驱动径向收敛;在近接触时,切向EHD滑动进一步引起异步共场轨道旋转。至关重要的是,单个电旋转(ER)不仅保持了原来的方向,而且保持了稳定的速率——速率偏离了
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引用次数: 0
Long-Read, High-Resolution Sanger Sequencing by Micelle-Tagging Electrophoresis 长读,高分辨率的Sanger测序胶束标记电泳。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-21 DOI: 10.1002/elps.70047
Randall Gamble, H. Michael Wenz, Bashar Mullah, James W. Schneider

We demonstrate a gel-free electrophoretic separation of Sanger sequencing fragments up to 782 bases in length using nonionic wormlike micelles as drag-tags in micelle-tagging electrophoresis (MTE). This is an increase of 280 bases over previous MTE methods and a nearly three-fold improvement over end-labeled free-solution electrophoresis (ELFSE) methods that use covalently attached drag-tags. For MTE, C18 alkane groups are attached to primers prior to their enzymatic extension. This alkane group provides a binding site for wormlike micelles composed of CiEj-type nonionic surfactants in the running buffer. Transient attachment of micelles to the C18 alkane group provides a highly uniform drag, equal to that of an ssDNA fragment 309 bases long. To account for slight mobility differences among the BigDye chain terminators, we developed a two-parameter time-shifting procedure to align the electropherograms for each termination chemistry. The increase in read length for this low-viscosity buffer (2.1 cP) is attributed to the alignment procedure, the large yet uniform drag, and the small degree of adsorption-based band broadening.

我们证明了Sanger测序片段的无凝胶电泳分离长达782个碱基,使用非离子型虫状胶束作为胶束标记电泳(MTE)的拖标签。这比以前的MTE方法增加了280个碱基,比使用共价附着的标签的末端标记自由溶液电泳(ELFSE)方法提高了近三倍。对于MTE, C18烷烃基团在酶延伸之前附着在引物上。该烷烃基团为流动缓冲液中由cij型非离子表面活性剂组成的虫状胶束提供了一个结合位点。胶束在C18烷烃基团上的瞬时附着提供了高度均匀的阻力,相当于309个碱基长的ssDNA片段的阻力。为了解释BigDye链终止剂之间的微小迁移率差异,我们开发了一种双参数时移程序来校准每种终止化学的电泳图。这种低粘度缓冲液(2.1 cP)的读取长度的增加是由于对准过程、大而均匀的阻力和小程度的基于吸附的能带拓宽。
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引用次数: 0
Editorial Board: Electrophoresis 18F25 编辑委员会:电泳18F25
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-17 DOI: 10.1002/elps.70049
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引用次数: 0
Study on Dissociated States of Monocarboxylic Acids and Their Interactions With MCT1 by Capillary Electrophoresis With Interface-Induced Current Detector 毛细管电泳界面感应电流检测器研究单羧酸解离态及其与MCT1相互作用。
IF 2.5 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-10-17 DOI: 10.1002/elps.70028
Tao Huang, Chunsu Liang, Xiaomei Ling

High-performance capillary electrophoresis (CE) has been widely applied in the analysis of organic acids, especially monocarboxylic acids (MAs), but no studies on the CE analysis of dissociated states of MAs have been reported. Here, 15 MAs were analyzed by the newly developed universal interface-induced current detector (IICRD). Two current signal peaks were observed in current electrophoretograms (CR-EGs), whereas only one peak with low sensitivity can be obtained by diode array detector (DAD). The current signal peaks of MAs were accurately identified by adding a charge-neutral marker and calculating by pKa. The qualitative analysis indicated that the two current signal peaks of MAs were charge-neutral forms [MA±] and monovalent anions [MA] in order. Quantitative analysis showed that CE-IICRD can enhance the sensitivity of MA analytes to 40 µM in limit of detection (LOD), with a linear range from 10−6 to 10−2 M. Furthermore, interactions between different dissociated states of MAs and monocarboxylate transporter 1 (MCT1) were studied by combined application of nonimmobilized cell CE (NICCE) method for the first time. The binding kinetic parameters and mole number of MCT1 on cell membranes can also be obtained. Besides, competitive binding experiments proved that BAY-8002 (MCT1-specific inhibitor) and lactic acid shared the same binding site. CE-IICRD provides a new method to reveal the interaction between different dissociated forms of MAs or other biomolecules and essential receptors.

高效毛细管电泳(CE)已广泛应用于有机酸,特别是单羧酸(MAs)的分析中,但尚未见对MAs解离态进行CE分析的报道。本文采用新研制的通用界面感应电流检测器(IICRD)对15个MAs进行了分析。电流电泳图(CR-EGs)检测到两个电流信号峰,而二极管阵列检测器(DAD)只能检测到一个低灵敏度的电流信号峰。通过添加电荷中性标记和pKa计算,准确地识别了MAs的电流信号峰值。定性分析表明,MAs的两个电流信号峰依次为电荷中性形态[MA±]和单价阴离子形态[MA-]。定量分析表明,CE- iicrd可将MA分析物的灵敏度提高到40µM,检出限(LOD)为10-6 ~ 10-2 M,线性范围为10-6 ~ 10-2 M,并首次联合应用非固定化细胞CE (NICCE)方法研究了不同解离态MA与单羧酸转运体1 (MCT1)的相互作用。还可以得到MCT1在细胞膜上的结合动力学参数和摩尔数。此外,竞争结合实验证明BAY-8002 (mct1特异性抑制剂)与乳酸具有相同的结合位点。CE-IICRD为揭示不同解离形式的MAs或其他生物分子与必需受体之间的相互作用提供了新的方法。
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引用次数: 0
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ELECTROPHORESIS
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