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Front Cover: A dual-reference study design for understanding and improving AAV genome size analysis 封面:了解和改进 AAV 基因组大小分析的双重参考研究设计
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-27 DOI: 10.1002/elps.202470091
Yali Sun, Zhi-xiang Lu, Michael Miller, Ying Valcour, Anis H Khimani, Jana Bauer, Michael Salomon, Yanhong Tong

DOI: 10.1002/elps.202400011

The cover image is based on the Article A dual-reference study design for understanding and improving AAV genome size analysis by Yali Sun and Zhi-xiang Lu, et al., https://doi.org/10.1002/elps.202400011. Created with BioRender.com.

DOI:10.1002/elps.202400011该封面图片基于孙亚莉和卢志祥等人的文章《理解和改进AAV基因组大小分析的双重参考研究设计》,https://doi.org/10.1002/elps.202400011。使用 BioRender.com 制作。
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引用次数: 0
Moment analysis method for the determination of permeation kinetics of coumarin at lipid bilayers of liposomes by using capillary electrophoresis. 利用毛细管电泳测定香豆素在脂质体双分子层渗透动力学的矩分析方法。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-27 DOI: 10.1002/elps.202400100
Kanji Miyabe, Mio Sakai, Shunta Inaba

A method was developed for studying mass transfer kinetics at lipid bilayers of liposomes. Elution peaks of coumarin were measured by liposome electrokinetic chromatography (LEKC). Four types of phospholipids having different alkyl chains were used for preparing liposomes, which were used as pseudo-stationary phases in LEKC systems. Rate constants of permeation across lipid bilayers of liposomes or of adsorption at lipid membranes were determined by analyzing the first absolute and second central moments of the elution peaks measured by LEKC. The rate constants of permeation or adsorption tend to decrease with an increase in the carbon number of the alkyl chains of phospholipids. It was demonstrated that the moment analysis of elution peak profiles measured by LEKC is effective for determining lipid membrane permeability or adsorption kinetics. Compared with other conventional techniques, the method has some advantages for studying mass transfer kinetics at lipid bilayers. Solute permeation across or solute adsorption at real lipid bilayers of liposomes is analyzed. The principle of the method is the analysis of separation behavior in LEKC, which is different from that of the other ones. It is expected that the method contributes to the kinetic study of mass transfer at lipid bilayers from various perspectives.

开发了一种研究脂质体脂质双分子层传质动力学的方法。通过脂质体电动色谱法(LEKC)测量了香豆素的洗脱峰。制备脂质体时使用了四种具有不同烷基链的磷脂,它们在 LEKC 系统中被用作伪静止相。通过分析 LEKC 测得的洗脱峰的第一绝对中心矩和第二中心矩,确定了脂质体在脂质双分子层上渗透或在脂质膜上吸附的速率常数。随着磷脂烷基链碳数的增加,渗透或吸附的速率常数呈下降趋势。研究表明,对 LEKC 测量的洗脱峰轮廓进行矩分析可有效确定脂质膜渗透或吸附动力学。与其他传统技术相比,该方法在研究脂质双分子层的传质动力学方面具有一些优势。该方法分析了溶质在脂质体真实脂质双层膜上的渗透或吸附情况。该方法的原理是分析 LEKC 中的分离行为,这与其他方法不同。希望该方法能从多个角度促进脂质双分子层的传质动力学研究。
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引用次数: 0
Contents: Electrophoresis 17–18'24 内容:电泳 17-18'24
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-27 DOI: 10.1002/elps.202470093
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引用次数: 0
Comparative investigation of exosome extraction from rat bone marrow mesenchymal stem cells using three different methodologies. 使用三种不同方法从大鼠骨髓间充质干细胞中提取外泌体的比较研究。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-23 DOI: 10.1002/elps.202400055
Na Wang, Mingyue Yin, Jiaqi Yu, Jing Zhang, Xueli Pan

Exosomes have been identified as crucial mediators in numerous physiological and pathological processes, emerging as a focal point of scientific inquiry. This study aims to compare three methods for isolating exosomes from rat bone marrow mesenchymal stem cells: ultracentrifugation (UC), ultrafast separation system (EXODUS), and commercial precipitation kit (EXO-kit). First, the investigation compared exosomal morphology, particle size distribution, and expression of marker proteins. Subsequently, the RNA content, protein concentration, and purity of exosomes were evaluated. Finally, the impact of these exosomes on cellular metabolic viability and migration capacity was assessed. Results indicated that exosomes exhibited spherical or elliptical membrane structures, and most of the exosomes extracted by the three methods were in the range of 30to 200 nm. UC-extracted exosomes demonstrated the least impurities and clearest background, followed by EXODUS-extracted exosomes, and lastly EXO-kit-extracted exosomes. The EXO-kit-extracted exosomes yielded the highest RNA and protein content, whereas those isolated through UC exhibited superior purity. Furthermore, exosomes extracted from EXODUS and EXO-kit methods effectively enhanced the metabolic viability and migratory ability of osteoblast precursor cells compared to UC-extracted exosomes. In conclusion, each of the three methodologies presents advantages and limitations. Therefore, the selection of an appropriate exosome extraction technique should be based on specific experimental objectives and requirements.

外泌体已被确定为众多生理和病理过程中的关键介质,成为科学研究的焦点。本研究旨在比较从大鼠骨髓间充质干细胞中分离外泌体的三种方法:超速离心法(UC)、超快速分离系统(EXODUS)和商业沉淀试剂盒(EXO-kit)。首先,研究人员比较了外泌体的形态、粒度分布和标记蛋白的表达。随后,对外泌体的 RNA 含量、蛋白质浓度和纯度进行了评估。最后,评估了这些外泌体对细胞代谢活力和迁移能力的影响。结果表明,外泌体呈现球形或椭圆形膜结构,三种方法提取的外泌体大多在30至200纳米之间。UC提取的外泌体杂质最少,背景最清晰,其次是EXODUS提取的外泌体,最后是EXO-kit提取的外泌体。EXO-kit提取的外泌体的RNA和蛋白质含量最高,而通过UC分离的外泌体的纯度更高。此外,与 UC 提取的外泌体相比,EXODUS 和 EXO-kit 方法提取的外泌体能有效提高成骨细胞前体细胞的代谢活力和迁移能力。总之,这三种方法各有优势和局限性。因此,应根据具体的实验目的和要求选择合适的外泌体提取技术。
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引用次数: 0
Standardization and application of ARMS TaqMan real‐time PCR for screening of folate metabolism genes in Han Chinese ARMS TaqMan 实时 PCR 在汉族叶酸代谢基因筛查中的标准化和应用
IF 2.9 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-17 DOI: 10.1002/elps.202400017
Peipei Deng, Xuan Liu, Yuanjing Li, Huanhuan Li, Bangrong Zhao, Shusong Wang, Jing Ma
Folate has antioxidant properties, and low concentration in seminal plasma may be associated with increased DNA damage in sperm. Mutations of the methylenetetrahydrofolate reductase (MTHFR) and methionine synthase reductase (MTRR) genes, including MTHFR C677T (rs1801133), MTHFR A1298C (rs1801131), and MTRR A66G (rs1801394), can lead to decreased activity of the encoded folate metabolic enzymes, thereby affecting male reproduction. The current SNP detection methods commonly used in clinical practice have some shortcomings, such as long time‐consuming, complex detection steps, or high cost. The purpose of this study was to establish a simple, time‐saving, sensitive, accurate, and easy to clinical popularization method for folate metabolism gene detection. We combined ARMS‐PCR with TaqMan fluorescent probe to establish an ARMS TaqMan real‐time PCR detection method. According to the variation of rs1801131, rs1801133, and rs1801394, two specific primers (one wild type and one mutant) were designed. Mismatched nucleotides were introduced at the penultimate or third position to improve the specificity of the primer. Specific TaqMan probe was introduced to detect PCR products to improve the sensitivity of the method. The results showed that the sensitivity of ARMS TaqMan real‐time PCR in SNP genotyping was 1 ng, and the accuracy was 100%. A total of 249 clinical samples were detected by the established method, and the correlation between three SNPs and semen quality was analyzed. We found that individuals carrying the AG + GG genotype of rs1801394 had a lower risk of abnormal semen quality. In conclusion, we developed a highly sensitive, accurate, rapid, and easy to be popularized method for detecting SNPs of rs1801394, rs1801131, and rs1801133. ARMS TaqMan real‐time PCR is a reliable SNP genotyping method in folate metabolism genes.
叶酸具有抗氧化作用,精浆中叶酸浓度低可能与精子中 DNA 损伤增加有关。亚甲基四氢叶酸还原酶(MTHFR)和蛋氨酸合成酶还原酶(MTRR)基因突变,包括MTHFR C677T(rs1801133)、MTHFR A1298C(rs1801131)和MTRR A66G(rs1801394),可导致编码的叶酸代谢酶活性降低,从而影响男性生殖。目前临床上常用的 SNP 检测方法存在一些缺点,如耗时长、检测步骤复杂或成本高。本研究旨在建立一种简单、省时、灵敏、准确、易于临床推广的叶酸代谢基因检测方法。我们将 ARMS-PCR 与 TaqMan 荧光探针相结合,建立了 ARMS TaqMan 实时 PCR 检测方法。根据 rs1801131、rs1801133 和 rs1801394 的变异,设计了两种特异引物(一种野生型引物,一种突变型引物)。在引物的倒数第二个或第三个位置引入了不匹配的核苷酸,以提高引物的特异性。引入特异的 TaqMan 探针检测 PCR 产物,以提高该方法的灵敏度。结果表明,ARMS TaqMan 实时 PCR 在 SNP 基因分型中的灵敏度为 1 ng,准确率为 100%。采用该方法共检测了 249 份临床样本,并分析了三个 SNP 与精液质量的相关性。我们发现,携带 rs1801394 AG + GG 基因型的个体精液质量异常的风险较低。总之,我们开发了一种高灵敏度、准确、快速且易于推广的方法来检测 rs1801394、rs1801131 和 rs1801133 的 SNPs。ARMS TaqMan real-time PCR 是一种可靠的叶酸代谢基因 SNP 基因分型方法。
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引用次数: 0
Preparation of alkyl microporous organic network‐based capillary column for an efficient gas chromatographic separation of position isomers 制备用于高效气相色谱分离位置异构体的烷基微孔有机网络毛细管柱
IF 2.9 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-17 DOI: 10.1002/elps.202400111
Zhi‐Yong Gao, Xi‐Jin Li, Yuan‐Yuan Cui, Cheng‐Xiong Yang
The large surface area, excellent thermal stability and easy modification make microporous organic networks (MONs) good candidates in the field of gas chromatography (GC). Due to the limited species and highly conjugated networks of MONs, their applications are still in infancy and restricted. To accelerate their developments and to enrich their types in GC, here we report the first example of synthesizing alkyl MON and its capillary column for GC separation of position isomers. Linear 1,8‐dibromooctane is used as the alkyl monomer instead of traditional aromatic ones to construct novel alkyl MON to decrease the inherent conjugated characteristic of MONs. The alkyl MON exhibits good thermal stability (up to 350°C), large surface area (1173 m2 g−1), and non‐polar character, allowing good resolution for alkanes, alkyl benzenes, alcohols, ketones, and diverse position isomers, including dichlorobenzene, trichlorobenzene, bromotoluene, nitrotoluene, methylbenzaldehyde, and ionone with the limits of detection (0.003 mg mL−1) and limits of quantitation of (0.10 mg mL−1). The in situ growth–prepared alkyl MON column demonstrates remarkable duration time and precisions for the retention relative standard deviations, (RSDs%, intra‐day, n = 7), 0.06%–0.53% (intra‐day, n = 7), and 2.87%–10.59% (column‐to‐column, n = 3). In addition, the fabricated alkyl MON‐coated capillary column offers better resolution than three commercial GC columns for the resolution of methylbenzaldehyde, bromotoluene, and chlorotoluene isomers. This work reveals the practicability for synthesizing alkyl MONs and demonstrates their prospects for position isomers separation.
微孔有机网络(MON)具有表面积大、热稳定性好和易于改性等特点,是气相色谱仪(GC)领域的理想候选材料。由于微孔有机物的种类有限且网络高度共轭,其应用仍处于起步阶段并受到限制。为了加快其发展并丰富其在气相色谱中的应用,我们在此报告了合成烷基 MON 及其毛细管柱用于气相色谱分离位置异构体的首个实例。我们采用线性 1,8-二溴辛烷作为烷基单体,而不是传统的芳香族单体来构建新型烷基 MON,以减少 MON 固有的共轭特性。这种烷基 MON 具有良好的热稳定性(高达 350°C)、较大的比表面积(1173 m2 g-1)和非极性特点,可以很好地分辨烷烃、烷基苯、醇、酮和不同位置的异构体,包括二氯苯、三氯苯、溴甲苯、硝基甲苯、甲基苯甲醛和离子酮,其检出限(0.003 mg mL-1)和定量限(0.10 mg mL-1)分别为 0.003 mg mL-1 和 0.10 mg mL-1。原位生长制备的烷基 MON 色谱柱在保留相对标准偏差(RSDs%,日内,n = 7)、0.06%-0.53%(日内,n = 7)和 2.87%-10.59%(柱间,n = 3)方面表现出卓越的持续时间和精确度。此外,在分辨甲基苯甲醛、溴甲苯和氯甲苯异构体方面,制造的烷基 MON 涂层毛细管柱比三种商用气相色谱柱具有更好的分辨能力。这项工作揭示了合成烷基 MON 的可行性,并展示了其在位置异构体分离方面的前景。
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引用次数: 0
Charge variant analysis of monoclonal antibodies by CZE‐MS using a successive multiple ionic‐polymer layer coating based on diethylaminoethyl‐dextran 利用基于二乙氨基乙基葡聚糖的连续多重离子聚合物层涂层,通过 CZE-MS 对单克隆抗体进行电荷变异分析
IF 2.9 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-17 DOI: 10.1002/elps.202400084
Alisa Höchsmann, Laura Dhellemmes, Laurent Leclercq, Hervé Cottet, Christian Neusüß
The characterization of the impurities of pharmaceutical monoclonal antibodies (mAbs) is crucial for their function and safety. Capillary zone electrophoresis (CZE) is one of the most efficient tools to separate charge variants of mAbs; however, peak characterization remains difficult, since the hereby used background electrolytes (BGEs) are not compatible with electrospray ionization‐mass spectrometry (ESI‐MS). Here, a method that allows the separation of intact mAb charge variants is presented using CZE‐ESI‐MS, combining a cationic capillary coating and an acidic BGE. Therefore, a successive multiple ionic‐polymer layer coating was developed based on diethylaminoethyl‐dextran–poly(sodium styrene sulfonate). This coating leads to a relatively low reversed electroosmotic flow (EOF) with an absolute mobility slightly higher than that of antibodies, enabling the separation of variants with slightly different mobilities. The potential of the coating is demonstrated using USP mAb003, where it was possible to separate C‐terminal lysine variants from the main form, as well as several acidic variants and monoglycosylated mAb forms. The presented CZE‐MS method can be applied to separate charge variants of a range of other antibodies such as infliximab, NISTmAB (Reference Material from the National Institute of Standards and Technology), adalimumab, and trastuzumab, demonstrating the general applicability for the separation of proteoforms of mAbs.
药物单克隆抗体(mAbs)杂质的表征对其功能和安全性至关重要。毛细管区带电泳(CZE)是分离 mAbs 电荷变体的最有效工具之一;然而,由于目前使用的背景电解质(BGEs)与电喷雾电离质谱(ESI-MS)不兼容,因此峰值表征仍然很困难。本文介绍了一种利用 CZE-ESI-MS 分离完整 mAb 电荷变体的方法,该方法结合了阳离子毛细管涂层和酸性背景电解质。因此,我们开发了一种基于二乙氨基乙基-葡聚糖-聚(苯乙烯磺酸钠)的连续多离子聚合物层涂层。这种涂层能产生相对较低的反向电渗流(EOF),其绝对迁移率略高于抗体的迁移率,从而能分离迁移率略有不同的变体。使用 USP mAb003 证明了这种涂层的潜力,它可以将 C 端赖氨酸变体与主体分离,还可以分离几种酸性变体和单糖基化 mAb 形式。所介绍的 CZE-MS 方法还可用于分离一系列其他抗体的电荷变体,如英夫利昔单抗、NISTmAB(美国国家标准与技术研究院标准物质)、阿达木单抗和曲妥珠单抗,这表明该方法普遍适用于 mAb 蛋白形式的分离。
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引用次数: 0
Streaming electric field, electroviscous effect, and electrokinetic liquid flows in the induced pressure‐driven transport of active liquids in narrow capillaries 窄毛细管中活性液体的诱导压力驱动输送中的流动电场、电粘性效应和电动液体流
IF 2.9 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-17 DOI: 10.1002/elps.202400133
Siddhartha Das, Ghansham Rajendrasingh Chandel
In this paper, we develop a theory for studying the electrokinetic effects in a charged nanocapillary filled with active liquid. The active particles present within the active liquid are self‐driven, demonstrate vortex defects, and enforce a circumferentially arranged polarization field. Under such circumstances, there is the development of an induced pressure‐gradient‐driven transport dictated (similar to diffusioosmotic transport) by the presence of an axial gradient in the activity (or the concentration of the active particles). This pressure‐driven transport has a profile different from the standard Hagen–Poiseuille flow in a nanocapillary. Also, this induced pressure‐driven flow drives electrokinetic effects, which are characterized by the generation of a streaming electric field, associated electroosmotic (EOS) transport opposing pressure‐driven flow, and electroviscous effect. We quantify these effects as functions of dimensionless parameters that vary inversely as the strength of the activity‐induced pressure‐driven flow and salt concentrations. Overall, we anticipate that this paper will draw immense attention toward a new type of activity‐induced pressure‐driven flow and associated electrokinetic phenomena in charged nanoconfinements.
在本文中,我们提出了一种理论,用于研究充满活性液体的带电纳米毛细管中的电动效应。存在于活性液体中的活性粒子是自驱动的,表现出涡旋缺陷,并强制形成周向排列的极化场。在这种情况下,由于活性(或活性粒子浓度)轴向梯度的存在,会产生诱导压力梯度驱动传输(类似于扩散渗透传输)。这种压力驱动的传输与纳米毛细管中的标准哈根-普瓦耶流具有不同的轮廓。此外,这种诱导的压力驱动流还会驱动电动效应,其特点是产生流电场、与压力驱动流相反的相关电渗(EOS)传输以及电粘性效应。我们将这些效应量化为无量纲参数的函数,这些参数与活动诱导的压力驱动流的强度和盐浓度成反比变化。总之,我们预计这篇论文将引起人们对带电纳米材料中新型活动诱导压力驱动流和相关电动现象的极大关注。
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引用次数: 0
Electrophoresis of polyelectrolyte‐adsorbed soft particle with hydrophobic inner core 具有疏水内核的聚电解质吸附软颗粒的电泳技术
IF 2.9 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-17 DOI: 10.1002/elps.202400143
Asim Mahata, Sanjib Kumar Pal, Hiroyuki Ohshima, Partha P. Gopmandal
This article deals with the electrophoresis of hydrophobic colloids absorbed by a layer of polymers with an exponential distribution of the polymer segments. The functional groups present in the polymer layer further follow the exponential distribution. We made an extensive mathematical study of the electrophoresis of such core‐shell structured soft particles considering the combined impact of heterogeneity in polymer segment distribution, ion steric effect, and hydrodynamic slippage of the inner core. The mathematical model is based on the flat‐plate formalism and deduced numerical results for electrophoretic mobility are valid for weak to highly charged particles for which the particle size well exceeds the Debye‐layer thickness. In addition, we have derived closed form analytical results for electrophoretic mobility of the particle under several electrohydrodynamic limits. We have further illustrated the results for electrophoretic mobility considering a charged and hydrophobic inner core coated with an uncharged polymer layer or a polymer layer that entraps either positive or negatively charged functional groups. The impact of pertinent parameters on the overall electrophoretic motion is further illustrated.
本文论述了被聚合物层吸收的疏水性胶体的电泳问题,聚合物段呈指数分布。聚合物层中的官能团进一步遵循指数分布。考虑到聚合物段分布的异质性、离子立体效应和内核的流体动力滑动的综合影响,我们对这种核壳结构软粒子的电泳进行了广泛的数学研究。数学模型基于平板形式主义,推导出的电泳流动性数值结果适用于粒径远大于德拜层厚度的弱电荷到高电荷颗粒。此外,我们还推导出了颗粒在几种电流体力学限制条件下的电泳迁移率的封闭式分析结果。考虑到带电和疏水的内核涂有不带电的聚合物层或夹带正电或负电官能团的聚合物层,我们进一步说明了电泳迁移率的结果。进一步说明了相关参数对整体电泳运动的影响。
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引用次数: 0
Electrokinetic particle trapping in microfluidic wells using conductive nanofiber mats. 利用导电纳米纤维毡在微流孔中进行电动粒子捕集。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-02 DOI: 10.1002/elps.202400051
J Hunter West, Tonoy K Mondal, Stuart J Williams

The frequency dependence of electrokinetic particle trapping using large-area (>mm2) conductive carbon nanofiber (CNF) mat electrodes is investigated. The fibers provide nanoscale geometric features for the generation of high electric field gradients, which is necessary for particle trapping via dielectrophoresis (DEP). A device was fabricated with an array of microfluidic wells for repeated experiments; each well included a CNF mat electrode opposing an aluminum electrode. Fluorescent microspheres (1 µm) were trapped at various electric field frequencies between 30 kHz and 1 MHz. Digital images of each well were analyzed to quantify particle trapping. DEP trapping by the CNF mats was greater at all tested frequencies than that of the control of no applied field, and the greatest trapping was observed at a frequency of 600 kHz, where electrothermal flow is more significantly weakened than DEP. Theoretical analysis and measured impedance spectra indicate that this result was due to a combination of the frequency dependence of DEP and capacitive behavior of the well-based device.

本文研究了使用大面积(>mm2)导电碳纳米纤维(CNF)毡电极进行电动粒子捕集的频率依赖性。碳纳米纤维为产生高电场梯度提供了纳米级几何特征,而高电场梯度是通过介电泳(DEP)捕获粒子所必需的。我们制作了一个带有微流孔阵列的装置,用于重复实验;每个微流孔都包括一个 CNF 毡电极和一个铝电极。荧光微球(1 微米)在 30 千赫到 1 兆赫的不同电场频率下被捕获。对每个孔的数字图像进行分析,以量化粒子捕集。在所有测试频率下,CNF 垫对 DEP 的捕获都大于无外加电场的对照组,在 600 kHz 频率下观察到最大的捕获,在该频率下,电热流比 DEP 更明显地减弱。理论分析和测得的阻抗谱表明,这一结果是由 DEP 的频率依赖性和井基装置的电容行为共同造成的。
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引用次数: 0
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