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Stable Suppression of Lactate Dehydrogenase Activity during Anoxia in the Foot Muscle of Littorina littorea and the Potential Role of Acetylation as a Novel Posttranslational Regulatory Mechanism. 缺氧条件下Littorina littorea足肌乳酸脱氢酶活性的稳定抑制以及乙酰化作为一种新的翻译后调节机制的潜在作用。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-10-23 DOI: 10.1155/2013/461374
Ali Shahriari, Neal J Dawson, Ryan A V Bell, Kenneth B Storey

The intertidal marine snail, Littorina littorea, has evolved to withstand extended bouts of oxygen deprivation brought about by changing tides or other potentially harmful environmental conditions. Survival is dependent on a strong suppression of its metabolic rate and a drastic reorganization of its cellular biochemistry in order to maintain energy balance under fixed fuel reserves. Lactate dehydrogenase (LDH) is a crucial enzyme of anaerobic metabolism as it is typically responsible for the regeneration of NAD(+), which allows for the continued functioning of glycolysis in the absence of oxygen. This study compared the kinetic and structural characteristics of the D-lactate specific LDH (E.C. 1.1.1.28) from foot muscle of aerobic control versus 24 h anoxia-exposed L. littorea. Anoxic LDH displayed a near 50% decrease in V max (pyruvate-reducing direction) as compared to control LDH. These kinetic differences suggest that there may be a stable modification and regulation of LDH during anoxia, and indeed, subsequent dot-blot analyses identified anoxic LDH as being significantly less acetylated than the corresponding control enzyme. Therefore, acetylation may be the regulatory mechanism that is responsible for the suppression of LDH activity during anoxia, which could allow for the production of alternative glycolytic end products that in turn would increase the ATP yield under fixed fuel reserves.

潮间带海螺,Littorina littorea,已经进化到能够承受潮汐变化或其他潜在有害环境条件带来的长时间缺氧。生存依赖于对其代谢率的强烈抑制和细胞生物化学的剧烈重组,以维持固定燃料储备下的能量平衡。乳酸脱氢酶(LDH)是厌氧代谢的关键酶,因为它通常负责NAD(+)的再生,这使得糖酵解在缺氧的情况下继续发挥作用。本研究比较了有氧对照和缺氧暴露24 h的立鼠足部肌肉中d -乳酸特异性LDH (E.C. 1.1.1.28)的动力学和结构特征。与对照组相比,缺氧LDH的vmax(丙酮酸还原方向)降低了近50%。这些动力学差异表明,在缺氧条件下,LDH可能存在稳定的修饰和调控,事实上,随后的点印迹分析发现,缺氧条件下的LDH乙酰化程度明显低于相应的对照酶。因此,乙酰化可能是在缺氧时抑制LDH活性的调节机制,这可能允许产生替代糖酵解终产物,从而增加固定燃料储备下的ATP产量。
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引用次数: 15
Optimization and Immobilization of Purified Labeo rohita Visceral Protease by Entrapment Method. 包埋法优化及固定化纯化的牛唇鱼内脏蛋白酶。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-02-27 DOI: 10.1155/2013/874050
S Geethanjali, Anitha Subash

The purified fish visceral protease enzyme was immobilized by using various concentrations of sodium alginate and calcium chloride to optimize the best concentration for the formation of the beads. Then it was characterized by assaying the optimal pH, temperature, storage stability and reusability. The results on immobilization with sodium alginate and calcium chloride showed that a combination of 2% sodium alginate and 0.3 M calcium chloride weas found to be the optimum concentration for the formation of spherical and stable beads, this gave a maximal entrapped activity of 48.31%, and there was no change in the optimum pH 8.0 and temperature 40°C of protease before and after entrapment. The results on stability and reusability indicated that it was stable at 4°C retaining 100% residual activity after 5 days of storage and 67% loss of activity after ten days of storage and it retained 100% residual activity on the first reuse, 75% residual activity on the second reuse, 25% residual activity on the third use and complete loss in the activity on the fourth reuse.

用不同浓度的海藻酸钠和氯化钙对纯化的鱼内脏蛋白酶进行固定化,以优化形成微球的最佳浓度。然后对其进行了最佳pH、温度、贮存稳定性和可重复使用性的表征。海藻酸钠和氯化钙的固定化结果表明,2%海藻酸钠和0.3 M氯化钙的组合是形成球形稳定微球的最佳浓度,其包封活性最高为48.31%,且包封前后蛋白酶的最佳pH 8.0和温度40℃没有变化。稳定性和可重用性结果表明,该材料在4℃条件下保持稳定,5天后保持100%的剩余活性,10天后活性损失67%,第一次重复使用时保持100%的剩余活性,第二次重复使用时保持75%的剩余活性,第三次使用时保持25%的剩余活性,第四次重复使用时完全失去活性。
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引用次数: 32
Solvent-Free Synthesis of Flavour Esters through Immobilized Lipase Mediated Transesterification. 固定化脂肪酶介导的无溶剂风味酯合成研究。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-05-30 DOI: 10.1155/2013/367410
Vijay Kumar Garlapati, Rintu Banerjee

The synthesis of methyl butyrate and octyl acetate through immobilized Rhizopus oryzae NRRL 3562 lipase mediated transesterification was studied under solvent-free conditions. The effect of different transesterification variables, namely, molarity of alcohol, reaction time, temperature, agitation, addition of water, and enzyme amount on molar conversion (%) was investigated. A maximum molar conversion of 70.42% and 92.35% was obtained in a reaction time of 14 and 12 h with the transesterification variables of 0.6 M methanol in vinyl butyrate and 2 M octanol in vinyl acetate using 80 U and 60 U immobilized lipase with the agitation speed of 200 rpm and 0.2% water addition at 32°C and 36°C for methyl butyrate and octyl acetate, respectively. The immobilized enzyme has retained good relative activity (more than 95%) up to five and six recycles for methyl butyrate and octyl acetate, respectively. Hence, the present investigation makes a great impingement in natural flavour industry by introducing products synthesized under solvent-free conditions to the flavour market.

在无溶剂条件下,研究了固定化米根霉NRRL 3562脂肪酶介导的酯交换反应合成丁酸甲酯和乙酸辛酯。考察了醇的摩尔浓度、反应时间、温度、搅拌、水的加入和酶的用量对摩尔转化率(%)的影响。固定脂肪酶用量为80u和60u,搅拌速度为200 rpm,加入0.2%水,32℃和36℃,丁酸甲酯和乙酸辛酯的酯交换速率分别为0.6 M甲醇和2 M辛醇,反应时间为14 h和12 h,最大摩尔转化率为70.42%和92.35%。该固定化酶对丁酸甲酯和乙酸辛酯分别可循环5次和6次,相对活性均保持在95%以上。因此,本研究将在无溶剂条件下合成的产品引入香精市场,对天然香精行业产生重大影响。
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引用次数: 59
Modelling and Optimization Studies on a Novel Lipase Production by Staphylococcus arlettae through Submerged Fermentation. 一种新型葡萄球菌深层发酵产脂酶的建模与优化研究。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-12-19 DOI: 10.1155/2013/353954
Mamta Chauhan, Rajinder Singh Chauhan, Vijay Kumar Garlapati

Microbial enzymes from extremophilic regions such as hot spring serve as an important source of various stable and valuable industrial enzymes. The present paper encompasses the modeling and optimization approach for production of halophilic, solvent, tolerant, and alkaline lipase from Staphylococcus arlettae through response surface methodology integrated nature inspired genetic algorithm. Response surface model based on central composite design has been developed by considering the individual and interaction effects of fermentation conditions on lipase production through submerged fermentation. The validated input space of response surface model (with R (2) value of 96.6%) has been utilized for optimization through genetic algorithm. An optimum lipase yield of 6.5 U/mL has been obtained using binary coded genetic algorithm predicted conditions of 9.39% inoculum with the oil concentration of 10.285% in 2.99 hrs using pH of 7.32 at 38.8°C. This outcome could contribute to introducing this extremophilic lipase (halophilic, solvent, and tolerant) to industrial biotechnology sector and will be a probable choice for different food, detergent, chemical, and pharmaceutical industries. The present work also demonstrated the feasibility of statistical design tools integration with computational tools for optimization of fermentation conditions for maximum lipase production.

来自温泉等极端环境的微生物酶是各种稳定和有价值的工业酶的重要来源。本文通过响应面法结合自然启发遗传算法,对葡萄球菌生产嗜盐、溶剂、耐受性和碱性脂肪酶的建模和优化方法进行了研究。考虑了不同发酵条件对深层发酵脂肪酶产量的影响,建立了基于中心复合设计的响应面模型。利用已验证的响应面模型输入空间(R(2)值为96.6%),通过遗传算法进行优化。采用二进制编码遗传算法预测接种量为9.39%,油浓度为10.285%,pH为7.32,温度为38.8℃,接种时间为2.99 h,脂肪酶的最佳产率为6.5 U/mL。这一结果可能有助于将这种极端性脂肪酶(嗜盐性、溶剂性和耐受性)引入工业生物技术领域,并将成为不同食品、洗涤剂、化学和制药行业的可能选择。目前的工作还证明了统计设计工具与计算工具集成的可行性,以优化发酵条件,以最大限度地生产脂肪酶。
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引用次数: 18
Purification and Characterization of Phenylalanine Ammonia Lyase from Trichosporon cutaneum. 皮毛霉苯丙氨酸解氨酶的纯化及特性研究。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-09-12 DOI: 10.1155/2013/670702
Andrea Goldson-Barnaby, Christine H Scaman

Trichosporon cutaneum phenylalanine ammonia lyase was selected as a model to investigate the dual substrate activity of this family of enzymes. Sequencing of the PAL gene identified an extensive intron region at the N-terminus. Five amino acid residues differing from a prior report were identified. Highest Phe : Tyr activities (1.6  ± 0.3 : 0.4 ± 0.1  μ mol/h g wet weight) were induced by Tyr. The enzyme has a temperature optimum of 32°C and a pH optimum of 8-8.5 and shows no metal cofactor dependence. Michaelis-Menten kinetics (Phe, K m   5.0  ±  1.1 mM) and positive allostery (Tyr, K'  2.4  ±  0.6 mM, Hill coefficient 1.9 ± 0.5) were observed. Anion exchange chromatography gave a purification fold of 50 with 20% yield. The His-Gln motif (substrate selectivity switch region) indicates the enzyme's ability to act on both substrates.

以皮三磷酸丝氨酸苯丙氨酸解氨酶为模型,研究了该酶家族的双底物活性。PAL基因的测序在n端发现了一个广泛的内含子区域。鉴定了与先前报告不同的五个氨基酸残基。Tyr诱导的Phe: Tyr活性最高(1.6±0.3:0.4±0.1 μ mol/h g湿重)。酶的最适温度为32℃,最适pH为8 ~ 8.5,对金属辅因子无依赖性。Michaelis-Menten动力学(Phe, K′5.0±1.1 mM)和正变构(Tyr, K′2.4±0.6 mM, Hill系数1.9±0.5)。阴离子交换色谱的纯化倍数为50倍,收率为20%。His-Gln基序(底物选择性开关区)表明该酶能够作用于这两种底物。
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引用次数: 17
Stability of a Lipase Extracted from Seeds of Pachira aquatica in Commercial Detergents and Application Tests in Poultry Wastewater Pretreatment and Fat Particle Hydrolysis. 一种从水栖木种子中提取的脂肪酶在商业洗涤剂中的稳定性及其在家禽废水预处理和脂肪颗粒水解中的应用试验。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-12-23 DOI: 10.1155/2013/324061
Patrícia Peres Polizelli, Fernanda Dell Antonio Facchini, Gustavo Orlando Bonilla-Rodriguez

A protein extract containing a plant lipase from oleaginous seeds of Pachira aquatica was tested using soybean oil, wastewater from a poultry processing plant, and beef fat particles as substrate. The hydrolysis experiments were carried out at a temperature of 40°C, an incubation time of 90 minutes, and pH 8.0-9.0. The enzyme had the best stability at pH 9.0 and showed good stability in the alkaline range. It was found that P. aquatica lipase was stable in the presence of some commercial laundry detergent formulations, and it retained full activity up to 0.35% in hydrogen peroxide, despite losing activity at higher concentrations. Concerning wastewater, the lipase increased free fatty acids release by 7.4 times and promoted the hydrolysis of approximately 10% of the fats, suggesting that it could be included in a pretreatment stage, especially for vegetable oil degradation.

以大豆油、家禽加工厂废水和牛肉脂肪颗粒为底物,对从产油种子中提取的含有植物脂肪酶的蛋白质提取物进行了试验。水解实验在温度40℃,孵育时间90 min, pH 8.0-9.0条件下进行。该酶在pH为9.0时稳定性最好,在碱性范围内表现出良好的稳定性。研究发现,P. aquatica脂肪酶在一些商业洗衣粉配方中是稳定的,在过氧化氢中保持了0.35%的充分活性,尽管在较高浓度下失去了活性。对于废水,脂肪酶使游离脂肪酸的释放量增加了7.4倍,并促进了约10%的脂肪的水解,这表明它可以被纳入预处理阶段,特别是对植物油的降解。
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引用次数: 12
Immobilization of α-Amylase onto Luffa operculata Fibers. α-淀粉酶在丝瓜纤维上的固定化。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-03-31 DOI: 10.1155/2013/803415
Ricardo R Morais, Aline M Pascoal, Samantha S Caramori, Flavio M Lopes, Kátia F Fernandes

A commercial amylase (amy) was immobilized by adsorption onto Luffa operculata fibers (LOFs). The derivative LOF-amy presented capacity to hydrolyze starch continuously and repeatedly for over three weeks, preserving more than 80% of the initial activity. This system hydrolyzed more than 97% of starch during 5 min, at room temperature. LOF-amy was capable to hydrolyze starch from different sources, such as maize (93.96%), wheat (85.24%), and cassava (79.03%). A semi-industrial scale reactor containing LOF-amy was prepared and showed the same yield of the laboratory-scale system. After five cycles of reuse, the LOF-amy reactor preserved over 80% of the initial amylase activity. Additionally, the LOF-amy was capable to operate as a kitchen grease trap component in a real situation during 30 days, preserving 30% of their initial amylase activity.

用吸附法固定化了一种商业淀粉酶(amy)。衍生物LOF-amy表现出连续和重复水解淀粉超过三周的能力,保留了80%以上的初始活性。在室温下,该系统在5分钟内水解97%以上的淀粉。LOF-amy能够水解不同来源的淀粉,如玉米(93.96%)、小麦(85.24%)和木薯(79.03%)。制备了一个半工业规模的含LOF-amy反应器,其产率与实验室规模的反应器相当。经过5次循环再利用,LOF-amy反应器保留了超过80%的初始淀粉酶活性。此外,LOF-amy能够在30天的实际情况下作为厨房隔油器组件运行,保留其初始淀粉酶活性的30%。
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引用次数: 9
Cellulase and Xylanase Production by Penicillium echinulatum in Submerged Media Containing Cellulose Amended with Sorbitol. 在含山梨醇改性纤维素的浸没培养基中青霉生产纤维素酶和木聚糖酶。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-08-22 DOI: 10.1155/2013/240219
Carla Eliana Todero Ritter, Marli Camassola, Denise Zampieri, Mauricio Moura Silveira, Aldo José Pinheiro Dillon

The present work investigated the use of sorbitol as a soluble carbon source, in association with cellulose, to produce cellulases and xylanases in submerged cultures of Penicillium echinulatum 9A02S1. Because cellulose is an insoluble carbon source, in cellulase production, there are some problems with rheology and oxygen transfer. The submerged fermentations containing media composed of 0, 0.25, 0.5, 0.75, and 1% (w/v) sorbitol and cellulose that were added at different times during the cultivation; 0.2% (w/v) soy bran; 0.1% (w/v) wheat bran; and a solution of salts. The highest filter paper activity (FPA) (1.95  ±  0.04 IU·mL(-1)) was obtained on the seventh day in the medium containing 0.5% (w/v) sorbitol and 0.5% (w/v) cellulose added 24 h after the start of cultivation. However, the CMCases showed an activity peak on the sixth day (9.99 ± 0.75 IU·mL(-1)) in the medium containing 0.75% (w/v) sorbitol and 0.75% (w/v) cellulose added after 12 h of cultivation. The xylanases showed the highest activity in the medium with 0.75% (w/v) sorbitol and 0.25% (w/v) cellulose added 36 h after the start of cultivation. This strategy enables the reduction of the cellulose concentration, which in high concentrations can cause rheological and oxygen transfer problems.

本文研究了利用山梨糖醇作为可溶性碳源,与纤维素结合,在青霉9A02S1的深层培养中产生纤维素酶和木聚糖酶。由于纤维素是一种不溶性碳源,在纤维素酶的生产中,存在一些流变学和氧传递的问题。在培养过程中,不同时间分别添加0、0.25、0.5、0.75和1% (w/v)山梨糖醇和纤维素组成的培养基;0.2% (w/v)大豆麸;0.1% (w/v)麦麸;还有盐溶液。在培养24 h后,添加0.5% (w/v)山梨醇和0.5% (w/v)纤维素的培养基中,第7天滤纸活性(FPA)最高,为1.95±0.04 IU·mL(-1)。在添加0.75% (w/v)山梨醇和0.75% (w/v)纤维素的培养基中,CMCases在培养12 h后第6天达到活性峰值(9.99±0.75 IU·mL(-1))。木聚糖酶在培养36 h后添加0.75% (w/v)山梨醇和0.25% (w/v)纤维素的培养基中活性最高。这种策略可以降低纤维素浓度,高浓度的纤维素会引起流变和氧转移问题。
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引用次数: 38
A Highly Thermostable Xylanase from Stenotrophomonas maltophilia: Purification and Partial Characterization. 嗜麦芽寡养单胞菌的高耐热木聚糖酶:纯化和部分特性。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-12-14 DOI: 10.1155/2013/429305
Abhay Raj, Sharad Kumar, Sudheer Kumar Singh

Seven xylanolytic bacterial strains were isolated from saw-dust dump soil. The bacterial strain X6 was selected on the basis of the highest xylanase activity with no cellulase contamination. It was identified as Stenotrophomonas maltophilia by biochemical tests and 16S rRNA gene sequencing approach. Xylanase production studies by S. maltophilia on different commercial xylans and agro-industrial residues suggested that wheat bran was the best carbon source for xylanase production (26.4 ± 0.6 IU/mL). The studies with inorganic and organic nitrogen sources suggested yeast extract as the best support for xylanase production (25 ± 0.6 IU/mL). Maximum xylanase production was observed at initial medium pH = 8.0 (23.8 ± 0.4 IU/mL) with production at pH = 7.0 and pH = 9.0 being almost comparable. Xylanase produced by S. maltophilia was purified to homogeneity using ammonium sulfate precipitation, gel filtration, and ion exchange chromatography. The final purification was 5.43-fold with recovery of 19.18%. The molecular weight of the purified xylanase protein was ~142 kDa. Both crude and purified xylanase had good stability at pH = 9.0 and 80°C with activity retention greater than 90% after 30 min incubation. The enzyme stability at high temperature and alkaline pH make it potentially effective for industrial applications.

从木屑排土场土壤中分离到7株解木质素细菌。菌株X6的木聚糖酶活性最高,且无纤维素酶污染。经生化检测和16S rRNA基因测序鉴定为嗜麦芽窄养单胞菌。嗜麦芽酵母对不同商品木聚糖和农工废渣产木聚糖酶的研究表明,麦麸是产木聚糖酶的最佳碳源(26.4±0.6 IU/mL)。无机氮源和有机氮源的研究表明,酵母提取物(25±0.6 IU/mL)是产木聚糖酶的最佳载体。初始培养基pH = 8.0(23.8±0.4 IU/mL)时木聚糖酶产量最高,pH = 7.0和pH = 9.0时产量几乎相当。通过硫酸铵沉淀、凝胶过滤和离子交换层析纯化了嗜麦芽葡萄球菌产生的木聚糖酶。最终纯化率为5.43倍,回收率为19.18%。纯化得到的木聚糖酶蛋白分子量为~142 kDa。粗木聚糖酶和纯化木聚糖酶在pH = 9.0和80℃条件下均具有良好的稳定性,孵育30 min后活性保持率均大于90%。酶在高温和碱性条件下的稳定性使其具有潜在的工业应用价值。
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引用次数: 36
Purification and Properties of Polygalacturonase Produced by Thermophilic Fungus Thermoascus aurantiacus CBMAI-756 on Solid-State Fermentation. 嗜热真菌金热曲霉CBMAI-756固态发酵产聚半乳糖醛酸酶的纯化及性能研究
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2013-01-01 Epub Date: 2013-09-12 DOI: 10.1155/2013/438645
Eduardo da Silva Martins, Rodrigo Simões Ribeiro Leite, Roberto da Silva, Eleni Gomes

Polygalacturonases are enzymes involved in the degradation of pectic substances, being extensively used in food industries, textile processing, degumming of plant rough fibres, and treatment of pectic wastewaters. Polygalacturonase (PG) production by thermophilic fungus Thermoascus aurantiacus on solid-state fermentation was carried out in culture media containing sugar cane bagasse and orange bagasse in proportions of 30% and 70% (w/w) at 45°C for 4 days. PG obtained was purified by gel filtration and ion-exchange chromatography. The highest activity was found between pH 4.5 and 5.5, and the enzyme preserved more than 80% of its activity at pH values between 5.0 and 6.5. At pH values between 3.0 and 4.5, PG retained about 73% of the original activity, whereas at pH 10.0 it remained around 44%. The optimum temperature was 60-65°C. The enzyme was completely stable when incubated for 1 hour at 50°C. At 55°C and 60°C, the activity decreased 55% and 90%, respectively. The apparent molecular weight was 29.3 kDa, K m of 1.58 mg/mL and V max of 1553.1  μ mol/min/mg. The presence of Zn(+2), Mn(+2), and Hg(+2) inhibited 59%, 77%, and 100% of enzyme activity, respectively. The hydrolysis product suggests that polygalacturonase was shown to be an endo/exoenzyme.

聚半乳糖醛酸酶是一种参与果胶物质降解的酶,广泛用于食品工业、纺织加工、植物粗纤维脱胶和果胶废水处理。研究了嗜热真菌金热曲霉(Thermoascus aurantiacus)在含甘蔗渣和橙甘蔗渣(w/w)比例分别为30%和70%的培养基上,在45℃条件下固态发酵生产聚半乳糖醛酸酶(PG) 4 d。所得的PG经凝胶过滤和离子交换层析纯化。pH值在4.5 ~ 5.5之间,酶活性最高;pH值在5.0 ~ 6.5之间,酶活性保持在80%以上。当pH值在3.0 ~ 4.5之间时,PG保持了73%的活性,而当pH值为10.0时,PG保持了44%的活性。最适温度为60 ~ 65℃。酶在50℃下孵育1小时完全稳定。在55°C和60°C时,活性分别下降55%和90%。表观分子量为29.3 kDa, K m为1.58 mg/mL, vmax为1553.1 μ mol/min/mg。Zn(+2)、Mn(+2)和Hg(+2)的存在分别抑制了59%、77%和100%的酶活性。水解产物表明,聚半乳糖醛酸酶是一种内/外酶。
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引用次数: 46
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Enzyme Research
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