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The Danish respiratory society guideline for long-term high flow nasal cannula treatment, with or without supplementary oxygen. 丹麦呼吸学会指南长期高流量鼻插管治疗,有或没有补充氧气。
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2178600
Ulla Møller Weinreich, Kasper Svendsen Juhl, Malene Søby Christophersen, Svend Gundestrup, Munsoor Ali Hanifa, Kristine Jensen, Frank Dyekjær Andersen, Ole Hilberg, Line Hust Storgaard

Introduction: Long-term High Flow Nasal Cannula (LT-HFNC), defined as High Flow Nasal Cannula treatment provided to patients with chronic pulmonary conditions during stable phases, has emerged as a home treatment in different categories of patients with chronic lung diseases in recent years.

Methods: This paper summarizes the physiological effects of LT-HFNC and evaluates the clinical knowledge to date about treatment in patients with chronic obstructive lung disease, interstitial lung disease and bronchiectasis. The guideline is translated and summarized in this paper and presented unabridged as an appendix to the paper.

Results: The paper describes the working process behind the Danish Respiratory Society's National guideline for treatment of stable disease, which has been written to support clinicians in both evidence-based decision making and practical issues concerning the treatment.

简介:长期高流量鼻插管(LT-HFNC)是近年来在不同类别的慢性肺部疾病患者中出现的一种家庭治疗方法,其定义为在稳定期为慢性肺部疾病患者提供的高流量鼻插管治疗。方法:总结LT-HFNC治疗慢性阻塞性肺疾病、间质性肺疾病和支气管扩张患者的生理作用,并对迄今为止的临床知识进行评价。该指南在论文中进行了翻译和总结,并作为论文的附录提供了未删节的内容。结果:本文描述了丹麦呼吸学会国家稳定疾病治疗指南背后的工作过程,该指南旨在支持临床医生基于证据的决策和有关治疗的实际问题。
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引用次数: 2
A retrospective study on immune-related pneumonitis in patients with non-small-cell lung cancer undergoing treatment with PD-1/PD-L1 inhibitors. 一项接受PD-1/PD-L1抑制剂治疗的非小细胞肺癌患者免疫相关性肺炎的回顾性研究
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2194162
Dorthe Yakymenko, Kristin Skougaard

Background: Lung cancer patients undergoing treatment with immune checkpoint inhibitors (ICIs) are at risk of developing immune-related (ir-)pneumonitis. Since lung cancer patients have competing reasons for respiratory symptoms, this poses a diagnostic challenge. This study aimed to explore diagnosis and management of ir-pneumonitis in this patient group.

Materials and methods: Suspected ir-pneumonitis was frequent in this group of patients. The cohort was characterized by high heterogeneity and lack of unequivocal diagnostic conclusions. Treatment of ir-pneumonitis was longer than recommended and involvement of pulmonologist was very infrequent. The result of this study reflects the difficulties in a daily clinical setting to diagnose and manage patients with lung cancer presenting with pulmonary symptoms.

Results: Suspected ir-pneumonitis was frequent in this group of patients. The cohort was characterized by high heterogeneity and lack of unequivocal diagnostic conclusions. Treatment of ir-pneumonitis was longer than recommended and involvement of pulmonologist was very infrequent. The result of this study reflects the difficulties in a daily clinical setting to diagnose and manage patients with lung cancer presenting with pulmonary symptoms.

背景:接受免疫检查点抑制剂(ICIs)治疗的肺癌患者有发生免疫相关性(ir-)肺炎的风险。由于肺癌患者出现呼吸系统症状的原因相互矛盾,这就给诊断带来了挑战。本研究旨在探讨该患者组肺炎的诊断和治疗。材料与方法:本组患者多为疑似肺炎。该队列的特点是高度异质性和缺乏明确的诊断结论。肺炎的治疗时间比推荐的要长,肺病专家的介入也很少。本研究的结果反映了在日常临床环境中诊断和管理以肺部症状为表现的肺癌患者的困难。结果:本组患者多为疑似肺炎。该队列的特点是高度异质性和缺乏明确的诊断结论。肺炎的治疗时间比推荐的要长,肺病专家的介入也很少。本研究的结果反映了在日常临床环境中诊断和管理以肺部症状为表现的肺癌患者的困难。
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引用次数: 1
Sedating antihistamine treatment with promethazine in patients with severe COPD with and without asthma: death and severe exacerbations in a nationwide register study. 异丙嗪在伴有和不伴有哮喘的严重慢性阻塞性肺病患者中的镇静抗组胺治疗:一项全国性登记研究中的死亡和严重恶化
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2250604
Barbara Bonnesen, Valdemar Rømer, Sidse Graff Jensen, Jon Torgny Wilcke, Julie Janner, Jens Bak, Sofie Johansson, Christian B Laursen, Lars Pedersen, Josefin Eklof, Pradeesh Sivapalan, Jens-Ulrik Stæhr Jensen

Background: Sedating antihistamines such as promethazine are used as anxiolytics and hypnotic agents for patients with chronic obstructive pulmonary disease (COPD) with and without asthma despite limited knowledge of its effects and side effects. We evaluated if treatment with promethazine had a lower risk of harmful outcome.

Methods: Nationwide retrospective cohort study of Danish specialist diagnosed outpatients with COPD treated with promethazine or an active comparator (melatonin). Patients with collection of promethazine or melatonin were propensity score matched 1:1. The primary outcome was a composite of severe COPD exacerbations and death from all causes analyzed by Cox proportional hazards regression. We performed an interaction analysis for comorbid asthma.

Results: In our registry of 56,523 patients with COPD, 5,661 collected promethazine (n = 3,723) or melatonin (n = 1,938). A cohort of 3,290 promethazine- or melatonin-treated patients matched 1:1 was available for the primary analysis.Within 1-year patients treated with promethazine were at higher risk of the primary outcome than matched controls with a Hazard Ratio (HR) of 1.42 (CI 1.27-1.58, p < 0.0001). Similarly, the risk of death was higher for promethazine-treated patients (HR 1.53, CI 1.32-1.77, p < 0.0001). An interaction analysis for comorbid asthma showed no interaction between comorbid asthma and the likelihood of a primary outcome when collecting promethazine (p = 0.19). Adjusted Cox analysis on the entire population indicated a further increased risk with more promethazine (HR for primary outcome among patients collecting ≥ 400 promethazine tablets/year=2.15, CI 1.94-2.38, p<0.0001).

Conclusions: Promethazine-treated patients with COPD had a concerning excess risk of a composite outcome of severe exacerbations and death from all causes compared to melatonin.

背景:镇静抗组胺药如异丙嗪被用作慢性阻塞性肺疾病(COPD)伴或不伴哮喘患者的抗焦虑药和催眠药,尽管对其作用和副作用的了解有限。我们评估异丙嗪治疗是否有较低的有害后果风险。方法:在全国范围内对丹麦专家诊断的门诊COPD患者进行回顾性队列研究,这些患者使用异丙嗪或活性比较物(褪黑激素)治疗。收集异丙嗪或褪黑素的患者倾向评分为1:1匹配。通过Cox比例风险回归分析,主要结局是严重COPD恶化和全因死亡的综合结果。我们对共病哮喘进行了相互作用分析。结果:在56,523例COPD患者的登记中,5,661例收集了异丙嗪(n = 3,723)或褪黑素(n = 1,938)。3,290名异丙嗪或褪黑激素治疗的患者进行了1:1的配对,可用于初步分析。在1年内,异丙嗪治疗的患者发生主要结局的风险高于对照组,风险比(HR)为1.42 (CI 1.27-1.58, p p p = 0.19)。对整个人群进行校正后的Cox分析表明,服用异丙嗪的风险进一步增加(在服用异丙嗪≥400片/年的患者中,主要结局HR =2.15, CI 1.94-2.38)。结论:与褪黑激素相比,异丙嗪治疗的COPD患者存在严重恶化和全因死亡的复合结局风险。
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引用次数: 0
Vaccine effectiveness of the pneumococcal polysaccharide and conjugated vaccines in elderly and high-risk populations in preventing invasive pneumococcal disease: a systematic search and meta-analysis. 肺炎球菌多糖和结合疫苗在老年人和高危人群预防侵袭性肺炎球菌疾病中的疫苗有效性:一项系统搜索和荟萃分析
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2168354
Melina Gade Sikjær, Andreas Arnholdt Pedersen, Mari Stenvold Wik, Synne Smith Stensholt, Ole Hilberg, Anders Løkke

Background: Invasive pneumococcal disease (IPD) is a major cause of morbidity and mortality globally. However, the literature on the vaccine effectiveness (VE) of 23-valent polysaccharide vaccine (PPV23) and 13-valent conjugated vaccine (PCV13) against IPD in adults is sparse. The aim was to summarize the available evidence on the VE of the PPV23 and the PCV13 in elderly individuals against IPD and to investigate how age and comorbidities influence VE against IPD.

Methods: A systematic search was conducted in Medline and Embase in February 2021. We used combinations of terms related to PPV23, PCV13, elderly, high-risk populations, and IPD. Eligible articles published since 2010 were included. Two authors reviewed and extracted data.

Results: Eight studies met the inclusion criteria for PPV23. The meta-analysis showed a reduced OR for all-type IPD with the use of PPV23 vaccine compared with unvaccinated controls (OR 0.69; 95%CI 0.54, 0.88) and a reduced OR for vaccine-type IPD compared with non-vaccine type IPD (0.69; 95%CI 0.63, 0.76). VE against vaccine-type IPD ranged from 28% to 54.1% for individuals aged 65-79 and from 7.5% to 34% for those aged ≥80-85 years. Most studies found a lower VE of PPV23 in populations with comorbidities and in immunocompromised populations compared with the VE for individuals without comorbidities.One study met the inclusion criteria for PCV13. The vaccine efficacy of PCV13 against IPD in individuals aged ≥65 was 75.0% (95% CI, 41.4 to 90.8).

Conclusion: The results from this review show a reduction of IPD in elderly and high-risk populations vaccinated with PPV23 and PCV13. The protective effect may be lower in elderly individuals aged >80 and in individuals with comorbidities. However, the literature is sparse; large-scale prospective studies are required to evaluate the VE of PPV23 and PCV13 vaccination in adults against IPD.

背景:侵袭性肺炎球菌病(IPD)是全球发病率和死亡率的主要原因。然而,关于23价多糖疫苗(PPV23)和13价结合疫苗(PCV13)对成人IPD的疫苗有效性(VE)的文献很少。目的是总结PPV23和PCV13在老年人抗IPD中的VE的现有证据,并研究年龄和合并症如何影响抗IPD的VE。方法:于2021年2月在Medline和Embase进行系统检索。我们使用了与PPV23、PCV13、老年人、高危人群和IPD相关的术语组合。纳入2010年以来发表的符合条件的文章。两位作者回顾并提取了数据。结果:8项研究符合PPV23的纳入标准。荟萃分析显示,与未接种疫苗的对照组相比,使用PPV23疫苗降低了所有类型IPD的OR (OR 0.69;95%CI 0.54, 0.88),与非疫苗型IPD相比,疫苗型IPD的OR降低(0.69;95%ci 0.63, 0.76)。65-79岁人群抗疫苗型IPD的VE为28% - 54.1%,≥80-85岁人群为7.5% - 34%。大多数研究发现,与没有合并症的个体相比,有合并症人群和免疫功能低下人群的PPV23 VE较低。一项研究符合PCV13的纳入标准。≥65岁人群PCV13对IPD的疫苗有效率为75.0% (95% CI, 41.4 ~ 90.8)。结论:本综述的结果显示,接种PPV23和PCV13的老年人和高危人群IPD降低。在80岁以上的老年人和有合并症的人群中,保护作用可能较低。然而,相关文献很少;需要大规模的前瞻性研究来评估成人接种PPV23和PCV13预防IPD的效果。
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引用次数: 1
Spontaneous recovery of anosmia after 2.5 years in a young COVID-19 patient. 一名年轻COVID-19患者在两年半后嗅觉丧失自动恢复。
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2178598
Erfan Ghadirzadeh, Lotfollah Davoodi, Fatemeh Khazaei, Amirmasoud Taheri
To the Editor: It has been 3 years since the world was confronted with a new challenge: coronavirus disease 2019 (COVID-19) [1]. COVID-19 typically manifests with respiratory symptoms, such as dry cough and dyspnea; however, it is not unusual for other organ signs and symptoms to appear [2]. A 2020 meta-analysis found that 53% of COVID19 patients suffer from taste and smell impairments [3]. Anosmia, the loss of the sense of smell, is one of them and is regarded both as a symptom and as a complication of COVID-19, which may remain even after the patient is no longer infected [3]. Sixty to seventy percent of patients recover from this disorder within 4 weeks after having COVID19, either entirely or partially [2]. Seventy-eight percent of patients recover their sense of smell entirely after 2 months, while 95% do so after 6 months [2,3]. Nonetheless, some people may endure anosmia for more than a year. These patients undergo numerous diagnostic and therapeutic procedures but do not heal completely [4]. Several therapy approaches might be pursued when anosmia persists for longer than 2 weeks [4]. Current options for treatment include intranasal corticosteroids, sodium citrate, and olfactory exercises [2]. Some patients do not respond to these treatments and have permanent olfactory loss. These patients may be candidates for other experimental therapies, such as stem cell therapy [2]. On 10 April 2020, a 23-year-old woman presented to the pulmonology clinic of Imam Khomeini Hospital in Sari, Mazandaran Province, Iran, with a complaint of a dry cough, fever, and loss of smell. On physical examination, her vital signs and organ examinations were normal. She tested positive for COVID-19 with a PCR test. The patient was ultimately diagnosed with mild COVID19. On the subsequent follow-up, her respiratory symptoms improved, but her anosmia did not. On 1 November 2022, she returned and reported that she could once again detect odors. She stated that approximately a month ago, she occasionally detected odors for a short period. Over time, the duration and intensity of the odor from these episodes began to increase. Now, she has regained her original sense of smell. Several hypotheses have been proposed as potential anosmic mechanisms. A study by Torabi et al. [5]. Based on the fact that TNFand IL-1 are high in COVID-19 patients, they suggested that inflammation of the olfactory epithelium could be a cause of short-term anosmia. This can explain why intranasal corticosteroids have the desired effects on COVID-19 anosmia. Cazzolla et al. [6] evaluated the IL-6 levels in venous blood samples of anosmic COVID-19 patients and concluded that recovery of the sense of smell correlates with a decrease in IL-6 blood levels. Other pathways associated with persistent anosmia in COVID-19 patients include olfactory cleft syndrome, olfactory epithelium or bulbar injury, microglial cell destruction, and apoptosis of olfactory neurons and stem cells [2]. Moreover, prolonged S
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引用次数: 0
Fixed-dose combination fluticasone/formoterol for asthma treatment in a real-world setting: meta-analysis of exacerbation rates and asthma control. 固定剂量氟替卡松/福莫特罗联合治疗哮喘在现实世界的设置:加重率和哮喘控制的荟萃分析
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2174642
Alberto Papi, Murtaza Qasuri, Ernestine Chung, Mohamed Abdelbaset, Mohamed Aly Moussa, Vibeke Backer, Olaf Schmidt, Omar Usmani

Background: Treatment guidelines for asthma management are derived almost exclusively from the results of controlled clinical trials undertaken in carefully selected patient populations; meaning that their outcomes may not reflect the true performance of treatments when used in general daily medical practice. The aim of this meta-analysis was to combine the results of observational studies investigating the fluticasone propionate/formoterol (FP/FORM) fixed-dose combination in real-world asthma patients.

Methods: A systemic literature review was completed in March 2019 using the PubMed database. We identified 394 studies. Five studies, which included a total of 4756 patients treated with FP/FORM, were judged eligible and included in the meta-analysis.

Results: The estimated severe asthma exacerbation rate was 11.47% (95% CI, 5.8 to 18.72%), calculated from the random effect model. A sensitivity analysis excluding 2 studies (one was an outlier, and the exacerbation rate for the studied treatment alone could not be determined in the other) showed a 7.04% rate of severe asthma exacerbations. The estimated relative risk of the incidence of severe asthma exacerbations was 0.323 (95% CI, 0.159 to 0.658). The estimated asthma control rate was 60.6% (95% CI, 55.7% to 65.6%). The odds of achieving asthma control significantly increased by FP/FORM compared with pre-study conditions (estimated odds ratio: 2.214 [95% CI, 1.292 to 3.795]; p < 0.001).

Conclusions: The findings of this meta-analysis confirm the effectiveness of FP/FORM for the treatment of asthma patients in a real-world setting beyond the limitations of RCTs.

背景:哮喘管理的治疗指南几乎完全来源于在精心挑选的患者群体中进行的对照临床试验的结果;这意味着当在一般的日常医疗实践中使用时,它们的结果可能不能反映治疗的真实效果。本荟萃分析的目的是结合研究丙酸氟替卡松/福莫特罗(FP/FORM)固定剂量组合在真实哮喘患者中的观察性研究结果。方法:于2019年3月使用PubMed数据库完成系统文献综述。我们确定了394项研究。5项研究共纳入4756例接受FP/FORM治疗的患者,被判定为符合条件并纳入meta分析。结果:根据随机效应模型计算,估计严重哮喘加重率为11.47% (95% CI, 5.8 ~ 18.72%)。排除2项研究的敏感性分析(其中一项是异常值,另一项无法确定所研究的治疗方法的加重率)显示,严重哮喘加重率为7.04%。严重哮喘发作的相对危险度估计为0.323 (95% CI, 0.159 ~ 0.658)。估计哮喘控制率为60.6% (95% CI, 55.7% ~ 65.6%)。与研究前相比,FP/FORM组实现哮喘控制的几率显著增加(估计比值比:2.214 [95% CI, 1.292至3.795];结论:本荟萃分析的结果证实了FP/FORM在现实环境中治疗哮喘患者的有效性,超出了随机对照试验的局限性。
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引用次数: 0
Defined daily dose definition in medication adherence assessment in asthma. 哮喘患者服药依从性评估中的限定日剂量定义。
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2207335
Päivi Saukkosalmi, Hannu Kankaanranta, Iida Vähätalo, Lauri Sillanmäki, Markku Sumanen

Adherence to inhaled corticosteroids (ICS) has been described as poor. In adherence studies, if the actual prescribed dosing is not available, generic defined daily doses (DDD) are applied instead when assessing adherence. We evaluated asthma patients' adherence in a large prospective follow-up survey. We also analysed whether World Health Organization (WHO) and Global Initiative for Asthma (GINA) reference doses give different results. The current study was cross-sectional and included respondents attending to HeSSup follow-up questionnaire in 2012. Altogether 1,141 of 12,854 adult participants answered positively to the question about having asthma. According to the Finnish Social Insurance Institutions' medication register, 686 of them had purchased ICS medication during 2011. DDDs for ICS by WHO as well as medium doses from GINA report were used as reference doses to evaluate adherence. To estimate adherence to ICS, the proportion of days covered (PDC) over one year was calculated for every patient. If the lower limit of GINA medium ICS dose was used as a reference, 65% of the patients were adherent (PDC ≥ 80%). Use of WHO's DDD as reference halved the proportion of adherent patients. Adherence was higher among those using a combination inhaler of corticosteroid and long-acting β2-agonist compared to those using steroid only inhalers. Use of WHO's daily defined doses as reference values may lead to underestimation of adherence to inhaled corticosteroids. Thus, attention should be paid when choosing the reference doses for the evaluation of adherence to inhaled corticosteroids in asthma.

吸入性皮质类固醇(ICS)的依从性被认为很差。在依从性研究中,如果没有实际的规定剂量,则在评估依从性时采用通用限定日剂量(DDD)。我们在一项大型前瞻性随访调查中评估了哮喘患者的依从性。我们还分析了世界卫生组织(WHO)和全球哮喘倡议(GINA)的参考剂量是否给出了不同的结果。目前的研究是横断面的,包括2012年参加HeSSup随访问卷的受访者。在12854名成年参与者中,共有1141人对患有哮喘的问题做出了肯定的回答。根据芬兰社会保险机构的药物登记,2011年期间,其中686人购买了ICS药物。采用WHO规定的ICS DDDs和GINA报告中的中剂量作为参考剂量评价依从性。为了评估ICS的依从性,计算每位患者一年的覆盖天数(PDC)比例。如果以GINA medium ICS剂量下限为参照,65%的患者贴壁(PDC≥80%)。使用世界卫生组织的DDD作为参考,使依从患者的比例减半。与仅使用类固醇吸入器的患者相比,使用皮质类固醇和长效β2激动剂联合吸入器的患者依从性更高。使用世卫组织每日确定剂量作为参考值可能导致低估吸入皮质类固醇的依从性。因此,在评估哮喘患者吸入性皮质类固醇依从性时,应注意选择参考剂量。
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引用次数: 0
Does the time to diagnosis and treatment influence outcome in adults with pleural infections. 诊断和治疗时间是否影响成人胸膜感染的预后?
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2174645
Mads Brögger Klausen, Christian Laursen, Morten Bendixen, Babu Naidu, Eihab O Bedawi, Najib M Rahman, Thomas Decker Christensen

Objective: To investigate the effect of early diagnosis and intervention in adult patients with complicated parapneumonic pleural effusion or pleural empyema and the impact on outcomes.

Methods: A systematic review based on a literature search of the PubMed database was performed.

Results: Eleven eligible studies were included; nine observational studies and two randomised controlled trials totalling a study population of 10,717 patients. The studies were conducted from 1992 to 2018, all in Europe and Northern America except one. Results varied between studies, but a trend towards better outcome in patients with shorter duration of symptoms and quicker initiation of treatment was found. We found that duration of symptoms before treatment may affect length of hospital stay, rate of conversion to open surgery, and frequency of complications.

Conclusion: We found that an earlier intervention in adults suffering from complicated parapneumonic pleural effusion and pleural empyema may potentially improve the outcome of patients in terms of length of stay, conversion to open surgery, and general complications following treatment, but not regarding mortality. Further studies are required to specify the timing of each intervention, and direct comparison in early management of interventions.

目的:探讨成人合并肺旁胸膜积液或胸膜脓肿的早期诊断和干预的效果及对预后的影响。方法:基于PubMed数据库的文献检索进行系统评价。结果:纳入了11项符合条件的研究;9项观察性研究和2项随机对照试验共纳入10717例患者。这些研究是从1992年到2018年进行的,除了一项研究外,其他研究都在欧洲和北美进行。不同研究的结果各不相同,但发现症状持续时间较短、开始治疗较快的患者预后较好。我们发现治疗前症状的持续时间可能影响住院时间、转开腹手术的比率和并发症的发生频率。结论:我们发现,对患有复杂的肺旁胸腔积液和胸膜脓肿的成人进行早期干预可能会改善患者的住院时间、转开腹手术和治疗后的一般并发症,但对死亡率没有影响。需要进一步的研究来明确每种干预措施的时间,并在干预措施的早期管理中进行直接比较。
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引用次数: 0
Whole-genome sequencing of the clinical isolate of Legionella pneumophila ALAW1 from the West Bank allows high-resolution typing and determination of pathogenicity mechanisms. 对来自约旦河西岸的嗜肺军团菌ALAW1临床分离株进行全基因组测序,可实现高分辨率分型和致病性机制的确定。
IF 1.9 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/20018525.2023.2168346
Ashraf R Zayed, Boyke Bunk, Lina Jaber, Hadeel Abu-Teer, Mousa Ali, Michael Steinert, Manfred G Höfle, Ingrid Brettar, Dina M Bitar

Background: Legionella pneumophila is water-based bacterium causing Legionnaires' disease (LD). We describe the first documented case of nosocomial LD caused by L. pneumophila sequence type (ST) 461 and serogroup 6. The etiology of LD was confirmed by culturing the bronchoalveolar lavage sample retrieving L. pneumophila strain ALAW1. A 7-days treatment of the LD patient with Azithromycin and Levofloxacin allowed complete recovery.

Methods: In details, we sequenced the whole genome of the L. pneumophila ALAW1 using Illumina HiSeq platform. The sequence of ALAW1 was aligned with the genome sequence from the closely related reference strain Alcoy 2300/99 and a whole-genome phylogeny based on single nucleotide polymorphisms (SNPs) was created using Parsnp software. Also, the TYGS web-server was used in order to compare the genome with type strain.

Results: An analysis of the population structure by SNP and TYGS comparison clustered ALAW1 with the reference genome Alcoy 2300/99. Blastp analysis of the type IV secretion Dot/Icm system genes showed that these genes were highly conserved with (≤25%) structural differences at the protein level.

Conclusions: Overall, this study provides insights into detailed genome structure and demonstrated the value of whole-genome sequencing as the ultimate typing tool for Legionella.

背景:嗜肺军团菌是引起军团病的水基细菌。我们报告了第一例由嗜肺乳杆菌序列型(ST) 461和血清组6引起的医院性LD病例。通过提取嗜肺乳杆菌ALAW1菌株的支气管肺泡灌洗液样本进行培养,确定LD的病因。经7天阿奇霉素和左氧氟沙星治疗,LD患者完全康复。方法:利用Illumina HiSeq平台对嗜肺乳杆菌ALAW1进行全基因组测序。将ALAW1序列与近缘参考菌株Alcoy 2300/99的基因组序列进行比对,并利用Parsnp软件建立基于单核苷酸多态性(snp)的全基因组系统发育图。同时,利用TYGS网络服务器将其基因组与型株进行比较。结果:通过SNP和TYGS分析,ALAW1与参考基因组Alcoy 2300/99聚类。对IV型分泌Dot/Icm系统基因的胚性分析表明,这些基因在蛋白水平上高度保守,结构差异(≤25%)。结论:总的来说,本研究提供了详细的基因组结构的见解,并证明了全基因组测序作为军团菌最终分型工具的价值。
{"title":"Whole-genome sequencing of the clinical isolate of <i>Legionella pneumophila</i> ALAW1 from the West Bank allows high-resolution typing and determination of pathogenicity mechanisms.","authors":"Ashraf R Zayed,&nbsp;Boyke Bunk,&nbsp;Lina Jaber,&nbsp;Hadeel Abu-Teer,&nbsp;Mousa Ali,&nbsp;Michael Steinert,&nbsp;Manfred G Höfle,&nbsp;Ingrid Brettar,&nbsp;Dina M Bitar","doi":"10.1080/20018525.2023.2168346","DOIUrl":"https://doi.org/10.1080/20018525.2023.2168346","url":null,"abstract":"<p><strong>Background: </strong><i>Legionella pneumophila</i> is water-based bacterium causing Legionnaires' disease (LD). We describe the first documented case of nosocomial LD caused by <i>L. pneumophila</i> sequence type (ST) 461 and serogroup 6. The etiology of LD was confirmed by culturing the bronchoalveolar lavage sample retrieving <i>L. pneumophila</i> strain ALAW1. A 7-days treatment of the LD patient with Azithromycin and Levofloxacin allowed complete recovery.</p><p><strong>Methods: </strong>In details, we sequenced the whole genome of the <i>L. pneumophila</i> ALAW1 using Illumina HiSeq platform. The sequence of ALAW1 was aligned with the genome sequence from the closely related reference strain Alcoy 2300/99 and a whole-genome phylogeny based on single nucleotide polymorphisms (SNPs) was created using Parsnp software. Also, the TYGS web-server was used in order to compare the genome with type strain.</p><p><strong>Results: </strong>An analysis of the population structure by SNP and TYGS comparison clustered ALAW1 with the reference genome Alcoy 2300/99. Blastp analysis of the type IV secretion Dot/Icm system genes showed that these genes were highly conserved with (≤25%) structural differences at the protein level.</p><p><strong>Conclusions: </strong>Overall, this study provides insights into detailed genome structure and demonstrated the value of whole-genome sequencing as the ultimate typing tool for <i>Legionella.</i></p>","PeriodicalId":11872,"journal":{"name":"European Clinical Respiratory Journal","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/c0/9d/ZECR_10_2168346.PMC9869991.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10622342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
The COVID-19 in athletes (COVA) study: a national study on cardio-pulmonary involvement of SARS-CoV-2 infection among elite athletes. 运动员中的 COVID-19 研究(COVA):一项关于精英运动员感染 SARS-CoV-2 导致心肺受累的全国性研究。
IF 1.8 Q3 RESPIRATORY SYSTEM Pub Date : 2022-12-09 eCollection Date: 2023-01-01 DOI: 10.1080/20018525.2022.2149919
Hanne Kruuse Rasmusen, Mikkel Aarøe, Christoffer Valdorff Madsen, Helga Lillian Gudmundsdottir, Kenneth Hudlebusch Mertz, Astrid Duus Mikkelsen, Christian Have Dall, Christoffer Brushøj, Jesper Løvind Andersen, Maria Helena Dominguez Vall-Lamora, Ann Bovin, S Peter Magnusson, Jens Jakob Thune, Redi Pecini, Lars Pedersen

Background: COVID-19 can cause cardiopulmonary involvement. Physical activity and cardiac complications can worsen prognosis, while pulmonary complications can reduce performance.

Aims: To determine the prevalence and clinical implications of SARS-CoV-2 cardiopulmonary involvement in elite athletes.

Methods: An observational study between 1 July 2020 and 30 June 2021 with the assessment of coronary biomarkers, electrocardiogram, echocardiography, Holter-monitoring, spirometry, and chest X-ray in Danish elite athletes showed that PCR-tested positive for SARS-CoV-2. The cohort consisted of male football players screened weekly (cohort I) and elite athletes on an international level only tested if they had symptoms, were near-contact, or participated in international competitions (cohort II). All athletes were categorized into two groups based on symptoms and duration of COVID-19: Group 1 had no cardiopulmonary symptoms and duration ≤7 days, and; Group 2 had cardiopulmonary symptoms or disease duration >7 days.

Results: In total 121 athletes who tested positive for SARS-CoV-2 were investigated. Cardiac involvement was identified in 2/121 (2%) and pulmonary involvement in 15/121 (12%) participants. In group 1, 87 (72%), no athletes presented with signs of cardiac involvement, and 8 (7%) were diagnosed with radiological COVID-19-related findings or obstructive lung function. In group 2, 34 (28%), two had myocarditis (6%), and 8 (24%) were diagnosed with radiological COVID-19-related findings or obstructive lung function.

Conclusions: These clinically-driven data show no signs of cardiac involvement among athletes who tested positive for SARS-CoV-2 infection without cardiopulmonary symptoms and duration <7 days. Athletes with cardiopulmonary symptoms or prolonged duration of COVID-19 display, exercise-limiting cardiopulmonary involvement.

背景:COVID-19 可导致心肺受累。体力活动和心脏并发症会使预后恶化,而肺部并发症则会降低成绩。目的:确定精英运动员中 SARS-CoV-2 心肺受累的患病率和临床影响:方法:在 2020 年 7 月 1 日至 2021 年 6 月 30 日期间进行了一项观察性研究,对丹麦精英运动员的冠状动脉生物标志物、心电图、超声心动图、Holter 监测、肺活量测定和胸部 X 光片进行了评估,结果显示 PCR 检测结果呈 SARS-CoV-2 阳性。研究对象包括每周接受筛查的男性足球运动员(研究对象 I)和仅在出现症状、近距离接触或参加国际比赛时才接受检测的国际级精英运动员(研究对象 II)。根据症状和 COVID-19 持续时间,所有运动员被分为两组:第一组无心肺症状且病程≤7 天,第二组有心肺症状或病程大于 7 天:结果:共对 121 名 SARS-CoV-2 检测呈阳性的运动员进行了调查。其中,2/121(2%)人受累于心脏,15/121(12%)人受累于肺部。在第 1 组中,87 名运动员(72%)没有出现心脏受累的症状,8 名运动员(7%)被诊断出与 COVID-19 相关的放射学结果或肺功能受阻。在第 2 组的 34 名运动员(28%)中,2 人患有心肌炎(6%),8 人(24%)被诊断出患有与 COVID-19 相关的放射学检查结果或肺功能受阻:这些临床数据表明,在感染 SARS-CoV-2 病毒呈阳性且无心肺症状和病程持续时间的运动员中,没有心脏受累的迹象。
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引用次数: 0
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European Clinical Respiratory Journal
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