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Annexin A2 and lamin B join membrane recycling compartments for the assembly of biomolecular condensates operating in mitotic partitioning. 膜联蛋白A2和层粘连蛋白B加入膜循环室,用于在有丝分裂分配中操作的生物分子凝聚物的组装。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-15 eCollection Date: 2025-01-01 DOI: 10.3389/fcell.2025.1744307
Ann Kari Grindheim, Hege Dale, Josef Novák, Sudarshan Shantinath Patil, Anni Vedeler, Jaakko Saraste

Localization of the actin-, lipid- and mRNA-binding protein Annexin A2 (AnxA2) in dividing cells revealed its presence in large spherical structures which are confined to the cell periphery and frequently co-align with astral microtubules. These structures appear during prometaphase and disappear at telophase, coinciding with the mitotic breakdown and subsequent reformation of the nuclear lamina and envelope. Their size increases as cells progress to anaphase, while their number decreases, suggesting that they are capable of fusion. Treatment of cells with the aliphatic alcohol propylene glycol led to rapid and reversible disassembly of the structures, providing further evidence that they correspond to biomolecular condensates. Notably, the condensates enclose compartments involved in biosynthetic or endocytic membrane recycling - defined by Rab1, Rab11, or endocytosed transferrin-but lack other membrane organelles, indicating that they may serve as mitotic reservoirs for selected endomembranes. Additionally, the condensates incorporate lamin B, which connects with the pericentrosomal membrane recycling compartments during prometaphase, when the nuclear lamina disassembles in conjunction with centrosome separation. These findings show similarities between the peripheral mitotic condensates and the membranous lamin B spindle matrix which has been proposed to act in spindle organization and organelle inheritance. The separating daughter cells at late anaphase contain equal numbers of the condensates, in accordance with their potential role in mitotic partitioning of endomembranes and other cytoplasmic components.

肌动蛋白、脂质和mrna结合蛋白Annexin A2 (AnxA2)在分裂细胞中的定位表明,它存在于局限于细胞外围的大球形结构中,并且经常与星状微管共同排列。这些结构在前期出现,在末期消失,与有丝分裂破裂和随后的核膜和核膜的重组一致。它们的大小随着细胞进入后期而增加,而它们的数量则减少,这表明它们能够融合。用脂肪族醇丙二醇处理细胞导致结构的快速可逆分解,进一步证明它们对应于生物分子凝聚体。值得注意的是,凝聚物包裹着参与生物合成或内噬膜循环的室室(由Rab1、Rab11或内噬转铁蛋白定义),但缺乏其他膜细胞器,这表明它们可能作为有丝分裂储存库,用于选定的内膜。此外,凝聚物还包含层粘连蛋白B,在前期,当核层解体与中心体分离时,层粘连蛋白B与中包膜循环室相连。这些发现表明外周有丝分裂凝聚物与被认为参与纺锤体组织和细胞器遗传的膜层蛋白B纺锤体基质有相似之处。后期分离的子细胞含有等量的凝聚物,这与它们在内膜和其他细胞质成分的有丝分裂分配中的潜在作用一致。
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引用次数: 0
PTEN enhances the radiosensitivity of melanoma by inhibiting DNA-PKcs. PTEN通过抑制DNA-PKcs增强黑色素瘤的放射敏感性。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-15 eCollection Date: 2025-01-01 DOI: 10.3389/fcell.2025.1712429
Shengqian Zhu, Haitao Xu, Fu Shen, Fangying Chen, Yangjian Wang

Background: The phosphatase and tensin homolog (PTEN) is a classical tumor-suppressor gene. Its expression deficiency concurrently drives disease progression in approximately 30% of melanomas and is closely associated with radiotherapy tolerance. However, there is a lack of systematic evidence regarding whether and how PTEN regulates the radiosensitivity of melanoma.

Methods: The expression of PTEN was validated using TCGA database, clinical tissue microarrays, and multiple melanoma cell lines. PTEN knockdown (PTEN-KD) and PTEN overexpression (PTEN-OE) stable cell lines were constructed using lentiviral vectors. CCK-8, colony formation assay, annexin V/PI flow cytometry, neutral comet assay, cell-cycle analysis, and Western blotting were used to assess the biological changes in cells after 0 Gy-8 Gy γ-ray irradiation (IR). A cell-derived xenograft model was established, and the tumor volume was observed after local 10 Gy IR for 28 days; in addition, H&E, Ki67, and TUNEL evaluations were performed.

Results: The expression of PTEN in melanoma tissues and cell lines was significantly lower than that in normal controls. IR could induce a transient upregulation of PTEN followed by rapid downregulation. PTEN-OE significantly inhibited proliferation, reduced the clone survival rate, increased apoptosis, and weakened radiation-induced G2/M phase arrest; however, the opposite was true for PTEN-KD. Mechanistically, PTEN-OE inhibited the DNA-PKcs axis, reduced NHEJ-mediated rapid repair, and increased the persistent expression of γ-H2AX. PTEN-KD activated the p-ATM/p-Chk2 signaling. Animal experiments confirmed that the tumor volume in the PTEN-OE + IR group was significantly lower than that in the NC + IR group, with an expanded necrotic area, a decreased Ki67 index, and an increased TUNEL-positive rate.

Conclusion: PTEN enhances the radiosensitivity of melanoma by inhibiting the DNA-PKcs signal, weakening NHEJ repair, and delaying cell-cycle recovery. PTEN can serve as a biomarker for radiotherapy response prediction and a target for sensitization intervention, providing an experimental basis for precise radiotherapy strategies for melanoma.

背景:磷酸酶和紧张素同源物(PTEN)是一种典型的肿瘤抑制基因。在大约30%的黑色素瘤中,其表达不足同时驱动疾病进展,并与放疗耐受性密切相关。然而,关于PTEN是否以及如何调节黑色素瘤的放射敏感性,缺乏系统的证据。方法:采用TCGA数据库、临床组织芯片和多种黑色素瘤细胞系验证PTEN的表达。利用慢病毒载体构建PTEN敲低(PTEN- kd)和PTEN-过表达(PTEN- oe)稳定细胞系。采用CCK-8、集落形成试验、膜联蛋白V/PI流式细胞术、中性彗星试验、细胞周期分析和Western blotting检测0 Gy-8 Gy γ射线辐照(IR)后细胞的生物学变化。建立细胞源性异种移植瘤模型,局部10 Gy IR照射28 d后观察肿瘤体积;此外,还进行了H&E、Ki67和TUNEL评估。结果:PTEN在黑色素瘤组织和细胞系中的表达明显低于正常对照组。IR可以诱导PTEN的短暂上调,然后快速下调。PTEN-OE显著抑制细胞增殖,降低克隆存活率,增加细胞凋亡,减弱辐射诱导的G2/M期阻滞;然而,PTEN-KD则相反。机制上,PTEN-OE抑制DNA-PKcs轴,减少nhej介导的快速修复,增加γ-H2AX的持续表达。PTEN-KD激活了p-ATM/p-Chk2信号通路。动物实验证实PTEN-OE + IR组肿瘤体积明显小于NC + IR组,坏死面积扩大,Ki67指数降低,tunel阳性率升高。结论:PTEN通过抑制DNA-PKcs信号,减弱NHEJ修复,延缓细胞周期恢复,增强黑色素瘤的放射敏感性。PTEN可作为预测放疗反应的生物标志物和增敏干预的靶点,为黑色素瘤的精准放疗策略提供实验依据。
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引用次数: 0
Exploring the effect of skim milk on the membrane stability of frozen-thawed Inner Mongolia cashmere goat sperm based on proteomics. 基于蛋白质组学研究脱脂乳对内蒙古绒山羊冻融精子膜稳定性的影响。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2025-01-01 DOI: 10.3389/fcell.2025.1701830
Shan-Hui Xue, Bing-Bing Xu, Wen-Ze Li, Jia-Xin Zhang, Rui Su

Introduction: The cryopreservation of semen from the Inner Mongolia cashmere goat, a valuable dual-purpose breed in China, results in a sharp decline in sperm motility, hindering genetic improvement and germplasm propagation. This study aimed to investigate the protective effects and underlying mechanisms of skim milk as a supplement in a cryopreservation extender.

Methods: Skim milk was added stepwise (2%-3.6%) to an egg yolk-soy lecithin basal extender, with 2.8% identified as the optimal concentration. Tandem mass tag (TMT) quantitative proteomics, coupled with parallel reaction monitoring (PRM) validation, was employed to analyze the proteomic profiles of post-thaw sperm and elucidate homeostatic mechanisms related to sperm membrane stability.

Results: The addition of 2.8% skim milk significantly increased post-thaw sperm motility to 68.23%, reduced ultrastructural abnormalities, elevated acrosomal integrity by 18.7%, and decreased lipid peroxidation by 29% (P < 0.05). Proteomic analysis identified 32 differentially expressed proteins. Gene Ontology (GO) enrichment revealed significant involvement in processes related to purine ribonucleoside triphosphate metabolism and transmembrane transporter activity. KEGG pathway analysis indicated predominant enrichment in energy metabolism and signal transduction pathways. PRM validation confirmed that proteins NDUFA8, PGAM2, ACTL7A, PRXL2B, ATP6V0C, and LELP1 exhibited expression patterns consistent with the proteomic data, serving as core biomarkers for skim milk-mediated membrane stabilization.

Discussion: This study provides the first proteomic-level evidence that skim milk enhances the cryotolerance of Inner Mongolia cashmere goat spermatozoa. The mechanism involves the modulation of an energy-membrane protein network, which stabilizes sperm membranes during cryopreservation. The identified proteins establish molecular biomarkers for optimizing semen cryopreservation protocols in this breed.

摘要内蒙古绒山羊是中国重要的双用途品种,其精液冷冻保存导致精子活力急剧下降,阻碍了遗传改良和种质繁殖。本研究旨在探讨脱脂牛奶作为低温保存扩展剂的保护作用及其潜在机制。方法:在蛋黄-大豆卵磷脂基础膨化剂中逐步添加脱脂乳(2% ~ 3.6%),确定其最佳添加浓度为2.8%。采用串联质量标签(TMT)定量蛋白质组学,结合平行反应监测(PRM)验证,分析解冻后精子的蛋白质组学特征,阐明与精子膜稳定性相关的稳态机制。结果:添加2.8%脱脂乳使解冻后精子活力提高68.23%,超微结构异常减少18.7%,顶体完整性提高18.7%,脂质过氧化降低29% (P < 0.05)。蛋白质组学分析鉴定出32个差异表达蛋白。基因本体(GO)富集揭示了嘌呤核糖核苷三磷酸代谢和跨膜转运蛋白活性相关过程的显著参与。KEGG通路分析表明,能量代谢和信号转导通路主要富集。PRM验证证实,蛋白NDUFA8、PGAM2、ACTL7A、PRXL2B、ATP6V0C和LELP1的表达模式与蛋白质组学数据一致,是脱脂牛奶介导的膜稳定的核心生物标志物。讨论:本研究首次提供蛋白质组学水平的证据,证明脱脂奶提高了内蒙古绒山羊精子的低温耐受性。其机制涉及能量膜蛋白网络的调节,该网络在冷冻保存期间稳定精子膜。鉴定的蛋白为优化该品种的精液冷冻保存方案建立了分子生物标志物。
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引用次数: 0
Editorial: Redox regulation in sperm and oocyte from gametogenesis to fertilization for reproductive health. 编辑:精子和卵母细胞从配子发生到受精的氧化还原调控对生殖健康的影响。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2026-01-01 DOI: 10.3389/fcell.2026.1775345
Xue Du, Huaming Xi, Fa Ren
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引用次数: 0
HIIT-induced lactate/GPR81 signaling with dual branches converging on ERK1/2 contributes to hippocampal synaptic remodeling and memory improvement. hiit诱导的双分支向ERK1/2聚集的乳酸/GPR81信号有助于海马突触重塑和记忆改善。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2026-01-01 DOI: 10.3389/fcell.2026.1699042
Xuepeng Bian, Qinghui Shang, Lutao Zhu, Jun Liu, Min Wu, Jingjing Li, Shujie Lou

The remodeling of synapses in the hippocampus is intricately linked to processes of learning and memory. Research indicates that high-intensity interval training (HIIT) enhances cognitive functions reliant on the hippocampus in mice, although the specific receptor-mediated molecular pathways involved are not fully elucidated. Lactate, which is produced in significant amounts during HIIT, may function as a signaling agent in the brain through the lactate receptor G protein-coupled receptor 81 (GPR81), classified as a Gi-type G protein-coupled receptor. This investigation focused on the lactate/GPR81 pathway's contribution to synaptic remodeling in the hippocampus induced by HIIT and examined its downstream signaling characteristics. In vivo results demonstrated that HIIT led to an increase in dendritic spine density and presynaptic vesicle density, enhancing learning and memory; however, these structural and cognitive improvements were negated by the knockdown of GPR81 in the hippocampus. In vitro experiments with Neuro-2a (N2a) cells, when treated with a GPR81 agonist alongside an adenyl cyclase (AC) agonist, a phospholipase C (PLC) inhibitor, and an extracellular signal-regulated kinase 1/2 (ERK1/2) inhibitor, revealed that GPR81 activation resulted in elevated ERK1/2 phosphorylation and increased levels of proteins associated with synaptic remodeling. Further pharmacological interventions reinforced a dual downstream signaling mechanism that involves the inhibition of the AC pathway and the activation of the PLC pathway, both of which converge on ERK1/2. Overall, these results suggest that the lactate/GPR81 pathway is essential for the critical aspects of HIIT-induced synaptic remodeling in the hippocampus and the enhancement of memory, supporting a GPR81-dependent dual-branch model that converges on ERK1/2 in a simplified in vitro context.

海马体突触的重塑与学习和记忆的过程有着复杂的联系。研究表明,高强度间歇训练(HIIT)增强了小鼠依赖海马的认知功能,尽管具体的受体介导的分子通路尚未完全阐明。乳酸在HIIT过程中大量产生,可能通过乳酸受体G蛋白偶联受体81 (GPR81)在大脑中发挥信号剂的作用,被归类为gi型G蛋白偶联受体。本研究关注乳酸/GPR81通路在HIIT诱导的海马突触重塑中的作用,并研究其下游信号特征。体内实验结果表明,HIIT导致树突棘密度和突触前囊泡密度增加,学习和记忆能力增强;然而,这些结构和认知的改善被海马GPR81的下调所抵消。在神经2a (N2a)细胞的体外实验中,当GPR81激动剂与腺苷环化酶(AC)激动剂、磷脂酶C (PLC)抑制剂和细胞外信号调节激酶1/2 (ERK1/2)抑制剂一起处理时,发现GPR81激活导致ERK1/2磷酸化升高,并增加与突触重塑相关的蛋白质水平。进一步的药物干预强化了双重下游信号机制,包括AC通路的抑制和PLC通路的激活,两者都汇聚在ERK1/2上。总的来说,这些结果表明,乳酸/GPR81通路在hiit诱导的海马突触重塑和记忆增强的关键方面至关重要,支持GPR81依赖的双分支模型,该模型在简化的体外环境中集中于ERK1/2。
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引用次数: 0
Atrial myocyte senescence as a driver of atrial fibrillation: mechanisms and therapeutic implications. 心房肌细胞衰老作为心房颤动的驱动因素:机制和治疗意义。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2025-01-01 DOI: 10.3389/fcell.2025.1702207
Zhaoyang Wei, Zhixiong Li, Nanhu Quan

Atrial fibrillation (AF) is the most common type of arrhythmia encountered in the clinical setting, and its occurrence is influenced by various factors, particularly aging. Senescence of atrial myocytes plays an important role in the development of AF, although the precise mechanisms underlying this association remain unclear. This review explores the pivotal role of atrial myocyte senescence in AF pathogenesis, moving beyond chronological age. It provides evidence that aging creates a pro-arrhythmic substrate via three interconnected mechanisms: 1) inflammatory activation (mitochondrial ROS, NLRP3, and SASP), 2) dysregulated calcium handling (RyR2 and SERCA2), and 3) cell cycle disruption (p16, p21, and p53). These pathways, compounded by epigenetic changes and SIRT1/mTOR signaling dysregulation, drive the electrical and structural remodeling that triggers and sustains AF. The review highlights promising therapeutic targets such as SIRT1 activators and NLRP3 inhibitors, proposing an integrated "senescence-AF axis" model, while identifying key research gaps in cell-type specificity and clinical translation. This comprehensive review outlines current progress in research in this area and future research directions and provides valuable references for forthcoming studies.

心房颤动(AF)是临床上最常见的心律失常类型,其发生受多种因素影响,尤其是年龄。心房肌细胞的衰老在房颤的发展中起着重要作用,尽管这种关联的确切机制尚不清楚。这篇综述探讨了心房肌细胞衰老在房颤发病中的关键作用,超越了实足年龄。它提供的证据表明,衰老通过三个相互关联的机制产生促心律失常底物:1)炎症激活(线粒体ROS, NLRP3和SASP), 2)钙处理失调(RyR2和SERCA2),以及3)细胞周期中断(p16, p21和p53)。这些通路,加上表观遗传变化和SIRT1/mTOR信号失调,驱动触发和维持房颤的电和结构重塑。该综述强调了有希望的治疗靶点,如SIRT1激活剂和NLRP3抑制剂,提出了一个集成的“衰老-房颤”模型,同时确定了细胞类型特异性和临床翻译方面的关键研究空白。本文综述了该领域的研究现状和未来的研究方向,为今后的研究提供了有价值的参考。
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引用次数: 0
Association between leukemic immunophenotype and overall survival in patients with acute promyelocytic leukemia: a retrospective cohort study. 急性早幼粒细胞白血病患者白血病免疫表型与总生存率之间的关系:一项回顾性队列研究
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2026-01-01 DOI: 10.3389/fcell.2026.1747649
Xuan Zha, Li Ma, Yun Yue, XiaoYu Wei, Baolan Sun, Weiguo Wang

Introduction: Acute promyelocytic leukemia (APL) is a distinct subtype of acute myeloid leukemia (AML) with unique clinical features. Flow cytometry (FCM) immunophenotyping analysis is crucial for accurate diagnosis and prognostic stratification. This study aims to explore the association between specific immune phenotype markers in APL patients and overall survival (OS).

Methods: In this retrospective cohort study, immunophenotypic data from 72 APL patients were analyzed by FCM. Continuous and categorical variables are presented as mean ± standard deviation and frequency (percentage), respectively. Group comparisons were performed using ANOVA and Chi-square tests. Cox proportional hazards models were used to identify prognostic factors for OS, with results expressed as hazard ratios (HRs) and 95% confidence intervals (CIs). Kaplan-Meier survival analysis was employed to assess the impact of CD56, CD2, CD34, and CD200 expression on OS. Subgroup analyses were conducted based on age, gender, white blood cell count (WBC), and disseminated intravascular coagulation (DIC).

Results: The baseline age (p = 0.513) and gender (p = 0.881) were comparable across different PML-RARα isoform groups. Compared to non-APL AML, APL blasts were characterized by significantly higher expression of CD33, CD13, CD9, and MPO (all p < 0.05), and lower expression of CD7, CD34, CD56, CD38, CD200, and HLA-DR (all p < 0.001). The PML-RARα (S-type) group showed relatively higher expression of CD34, CD2, and CD200 than the L-type group. Univariate Cox analysis revealed that expression of CD34, CD2, CD56, and CD200 were all significantly associated with poorer OS. After multivariate adjustment, CD2 (adjusted HR = 1.04, 95% CI: 1.01-1.07, p = 0.004) and CD200 (adjusted HR = 1.04, 95% CI: 1.01-1.06, p = 0.009) remained independent adverse prognostic factors. Subgroup analysis confirmed that the negative prognostic impact of CD2 and CD200 expression was consistent across different patient subgroups.

Conclusion: Compared with non-APL-AML patients, APL patients (PML-RARα (S-type) and PML-RARα (L-type)) exhibit unique immunophenotypic changes. The expression frequencies of CD56, CD2, CD34, and CD200 in leukemia cells are significantly correlated with the OS of APL patients, and the high expression of these indicators before treatment may be an adverse prognostic factor for APL patients.

急性早幼粒细胞白血病(APL)是急性髓系白血病(AML)的一种独特亚型,具有独特的临床特征。流式细胞术(FCM)免疫表型分析是准确诊断和预后分层的关键。本研究旨在探讨APL患者特异性免疫表型标志物与总生存期(OS)之间的关系。方法:在这项回顾性队列研究中,对72例APL患者的免疫表型数据进行FCM分析。连续变量和分类变量分别以均值±标准差和频率(百分比)表示。采用方差分析和卡方检验进行组间比较。Cox比例风险模型用于识别OS的预后因素,结果以风险比(hr)和95%置信区间(ci)表示。采用Kaplan-Meier生存分析评估CD56、CD2、CD34和CD200表达对OS的影响。根据年龄、性别、白细胞计数(WBC)和弥散性血管内凝血(DIC)进行亚组分析。结果:不同PML-RARα亚型组的基线年龄(p = 0.513)和性别(p = 0.881)具有可比性。与非APL AML相比,APL母细胞CD33、CD13、CD9和MPO的表达显著升高(p < 0.05), CD7、CD34、CD56、CD38、CD200和HLA-DR的表达显著降低(p < 0.001)。PML-RARα (s型)组CD34、CD2、CD200的表达明显高于l型组。单因素Cox分析显示,CD34、CD2、CD56和CD200的表达均与较差的OS显著相关。多因素调整后,CD2(校正HR = 1.04, 95% CI: 1.01-1.07, p = 0.004)和CD200(校正HR = 1.04, 95% CI: 1.01-1.06, p = 0.009)仍然是独立的不良预后因素。亚组分析证实,CD2和CD200表达对预后的负面影响在不同患者亚组中是一致的。结论:与非APL- aml患者相比,APL患者PML-RARα (s型)和PML-RARα (l型)表现出独特的免疫表型变化。白血病细胞中CD56、CD2、CD34、CD200的表达频率与APL患者的OS显著相关,治疗前这些指标的高表达可能是影响APL患者预后的不良因素。
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引用次数: 0
Integrative analysis of EMT-driving genes identifies a prognostic signature and GJB2 as a potential biomarker in glioblastoma. emt驱动基因的综合分析确定了胶质母细胞瘤的预后标志和GJB2作为潜在的生物标志物。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2025-01-01 DOI: 10.3389/fcell.2025.1754988
Xiao-Fei Liu, Bing Wang, Min Zhou, Duo Gong, Jia-Hui Zhang, Jun-Yan He, Wen-Tao Xiao

Background: Glioblastoma (GBM) is an aggressive malignancy of the central nervous system characterized by rapid progression, therapeutic resistance, and poor prognosis. Epithelial-mesenchymal transition (EMT) contributes to tumor plasticity and immune remodeling in GBM. Identification of EMT-driving genes (EDGs) with prognostic and therapeutic relevance may provide insights into disease progression and precision management. This study aimed to systematically identify prognostic EDGs and to construct a robust EMT-based prognostic model for GBM.

Methods: Univariate Cox regression analyses were performed across five GBM cohorts (TCGA, CGGA-693, CGGA-325, GSE83300, and GSE74187) to rank genes according to hazard ratios, followed by Gene Set Enrichment Analysis (GSEA), which identified EMT as the pathway most strongly associated with adverse survival. EMT-related genes from MSigDB and dbEMT2.0 were intersected with TCGA-derived prognostic genes to obtain 145 EDGs. An EMT-related prognostic signature was generated using LASSO Cox regression and validated in independent datasets. Functional analyses, including Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), weighted gene co-expression network analysis (WGCNA), and GSEA, elucidated biological processes associated with the risk signature. Immune infiltration analyses (ESTIMATE, CIBERSORT) and drug sensitivity analyses characterized the tumor microenvironment and therapeutic response. Random Forest analysis and in vitro assays identified and validated GJB2 as a key mediator of GBM progression.

Results: A total of 145 EDGs were identified by integrating survival-associated genes from TCGA with EMT-related genes from MSigDB and dbEMT2.0. An EMT-related prognostic signature was developed and validated across five GBM cohorts. The risk score stratified patients into high- and low-risk groups with significantly different survival outcomes and remained an independent prognostic factor in multivariate Cox analyses. A nomogram integrating the risk score with age, IDH mutation status, and MGMT promoter methylation demonstrated strong predictive performance. Immune profiling revealed that the high-risk group exhibited an "immune-inflamed yet immunosuppressed" phenotype characterized by elevated macrophage and regulatory T-cell infiltration. Drug sensitivity analyses suggested that high-risk GBM may respond better to paclitaxel and tamoxifen. Random Forest modeling and in vitro experiments identified GJB2 as an oncogenic driver that promotes GBM cell proliferation and migration.

Conclusion: Our findings provide a clinically applicable EMT-based prognostic framework that links transcriptional plasticity to patient outcomes in GBM and identify GJB2 as a promising therapeutic target.

背景:胶质母细胞瘤(GBM)是一种侵袭性中枢神经系统恶性肿瘤,其特点是进展迅速,治疗耐药,预后差。上皮-间质转化(EMT)参与GBM肿瘤的可塑性和免疫重塑。识别与预后和治疗相关的emt驱动基因(EDGs)可能为疾病进展和精确管理提供见解。本研究旨在系统地识别预后edg,并构建一个强大的基于emt的GBM预后模型。方法:对5个GBM队列(TCGA、CGGA-693、CGGA-325、GSE83300和GSE74187)进行单因素Cox回归分析,根据风险比对基因进行排序,然后进行基因集富集分析(GSEA),发现EMT是与不良生存最密切相关的途径。将来自MSigDB和dbEMT2.0的emt相关基因与tcga衍生的预后基因交叉,获得145个edg。使用LASSO Cox回归生成emt相关的预后特征,并在独立数据集中进行验证。功能分析,包括基因本体(GO)、京都基因与基因组百科全书(KEGG)、加权基因共表达网络分析(WGCNA)和GSEA,阐明了与风险特征相关的生物学过程。免疫浸润分析(ESTIMATE, CIBERSORT)和药物敏感性分析表征了肿瘤微环境和治疗反应。随机森林分析和体外试验鉴定并验证了GJB2是GBM进展的关键介质。结果:通过整合来自TCGA的生存相关基因与来自MSigDB和dbEMT2.0的emt相关基因,共鉴定出145个edg。在5个GBM队列中开发并验证了emt相关的预后特征。风险评分将患者分为高危组和低危组,生存结果有显著差异,在多变量Cox分析中仍然是一个独立的预后因素。将风险评分与年龄、IDH突变状态和MGMT启动子甲基化相结合的nomogram (nomogram)显示出很强的预测能力。免疫分析显示,高危组表现出“免疫炎症但免疫抑制”的表型,其特征是巨噬细胞和调节性t细胞浸润升高。药物敏感性分析表明,高危GBM可能对紫杉醇和他莫昔芬有更好的反应。随机森林模型和体外实验发现GJB2是促进GBM细胞增殖和迁移的致癌驱动因子。结论:我们的研究结果提供了一个临床适用的基于emt的预后框架,将转录可塑性与GBM患者的预后联系起来,并确定GJB2是一个有希望的治疗靶点。
{"title":"Integrative analysis of EMT-driving genes identifies a prognostic signature and GJB2 as a potential biomarker in glioblastoma.","authors":"Xiao-Fei Liu, Bing Wang, Min Zhou, Duo Gong, Jia-Hui Zhang, Jun-Yan He, Wen-Tao Xiao","doi":"10.3389/fcell.2025.1754988","DOIUrl":"10.3389/fcell.2025.1754988","url":null,"abstract":"<p><strong>Background: </strong>Glioblastoma (GBM) is an aggressive malignancy of the central nervous system characterized by rapid progression, therapeutic resistance, and poor prognosis. Epithelial-mesenchymal transition (EMT) contributes to tumor plasticity and immune remodeling in GBM. Identification of EMT-driving genes (EDGs) with prognostic and therapeutic relevance may provide insights into disease progression and precision management. This study aimed to systematically identify prognostic EDGs and to construct a robust EMT-based prognostic model for GBM.</p><p><strong>Methods: </strong>Univariate Cox regression analyses were performed across five GBM cohorts (TCGA, CGGA-693, CGGA-325, GSE83300, and GSE74187) to rank genes according to hazard ratios, followed by Gene Set Enrichment Analysis (GSEA), which identified EMT as the pathway most strongly associated with adverse survival. EMT-related genes from MSigDB and dbEMT2.0 were intersected with TCGA-derived prognostic genes to obtain 145 EDGs. An EMT-related prognostic signature was generated using LASSO Cox regression and validated in independent datasets. Functional analyses, including Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), weighted gene co-expression network analysis (WGCNA), and GSEA, elucidated biological processes associated with the risk signature. Immune infiltration analyses (ESTIMATE, CIBERSORT) and drug sensitivity analyses characterized the tumor microenvironment and therapeutic response. Random Forest analysis and <i>in vitro</i> assays identified and validated GJB2 as a key mediator of GBM progression.</p><p><strong>Results: </strong>A total of 145 EDGs were identified by integrating survival-associated genes from TCGA with EMT-related genes from MSigDB and dbEMT2.0. An EMT-related prognostic signature was developed and validated across five GBM cohorts. The risk score stratified patients into high- and low-risk groups with significantly different survival outcomes and remained an independent prognostic factor in multivariate Cox analyses. A nomogram integrating the risk score with age, IDH mutation status, and MGMT promoter methylation demonstrated strong predictive performance. Immune profiling revealed that the high-risk group exhibited an \"immune-inflamed yet immunosuppressed\" phenotype characterized by elevated macrophage and regulatory T-cell infiltration. Drug sensitivity analyses suggested that high-risk GBM may respond better to paclitaxel and tamoxifen. Random Forest modeling and <i>in vitro</i> experiments identified GJB2 as an oncogenic driver that promotes GBM cell proliferation and migration.</p><p><strong>Conclusion: </strong>Our findings provide a clinically applicable EMT-based prognostic framework that links transcriptional plasticity to patient outcomes in GBM and identify GJB2 as a promising therapeutic target.</p>","PeriodicalId":12448,"journal":{"name":"Frontiers in Cell and Developmental Biology","volume":"13 ","pages":"1754988"},"PeriodicalIF":4.6,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12847059/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146085133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dissecting the MAPK signaling landscape in malignant melanoma: from BRAF and NRAS mutations to precision combination therapies. 剖析恶性黑色素瘤中的MAPK信号:从BRAF和NRAS突变到精确的联合治疗。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2025-01-01 DOI: 10.3389/fcell.2025.1723066
Xiaobo Fang, Shuangyin Wang, Shuangxing Fu

Malignant melanoma is an aggressive skin malignancy with a complex molecular landscape and limited treatment durability in advanced stages. Aberrations in the MAPK pathway-most notably BRAF and NRAS mutations-have catalyzed the development of targeted therapies, particularly BRAF/MEK inhibitors, which have transformed outcomes in BRAF-mutant melanoma. However, resistance remains prevalent, driven by MAPK reactivation, epigenetic rewiring, and tumor microenvironmental feedback. In NRAS-mutant subtypes, MEK inhibition, CDK4/6 blockade, and immune checkpoint inhibition offer partial efficacy, yet monotherapies fail to achieve sustained responses. Emerging strategies focus on combinatorial regimens targeting RAF-MEK-ERK and PI3K-AKT axes, alongside immunotherapeutic integration. Rarer alterations in KIT and RTKs also define actionable subsets. This review synthesizes recent mechanistic insights and therapeutic advances in mutation-driven melanoma, highlighting the promise of biomarker-guided combination strategies and signaling crosstalk disruption as the next frontier in precision oncology.

恶性黑色素瘤是一种侵袭性皮肤恶性肿瘤,具有复杂的分子景观和有限的治疗持久性在晚期。MAPK通路的畸变——最明显的是BRAF和NRAS突变——催化了靶向治疗的发展,特别是BRAF/MEK抑制剂,它改变了BRAF突变黑色素瘤的预后。然而,在MAPK再激活、表观遗传重新布线和肿瘤微环境反馈的驱动下,耐药性仍然普遍存在。在nras突变亚型中,MEK抑制、CDK4/6阻断和免疫检查点抑制提供部分疗效,但单一疗法无法实现持续的应答。新兴策略侧重于针对RAF-MEK-ERK和PI3K-AKT轴的组合方案,以及免疫治疗整合。KIT和rtk中更罕见的变化也定义了可操作的子集。这篇综述综合了突变驱动黑色素瘤的最新机制见解和治疗进展,强调了生物标志物引导的联合策略和信号串扰中断作为精准肿瘤学的下一个前沿的前景。
{"title":"Dissecting the MAPK signaling landscape in malignant melanoma: from BRAF and NRAS mutations to precision combination therapies.","authors":"Xiaobo Fang, Shuangyin Wang, Shuangxing Fu","doi":"10.3389/fcell.2025.1723066","DOIUrl":"10.3389/fcell.2025.1723066","url":null,"abstract":"<p><p>Malignant melanoma is an aggressive skin malignancy with a complex molecular landscape and limited treatment durability in advanced stages. Aberrations in the MAPK pathway-most notably BRAF and NRAS mutations-have catalyzed the development of targeted therapies, particularly BRAF/MEK inhibitors, which have transformed outcomes in BRAF-mutant melanoma. However, resistance remains prevalent, driven by MAPK reactivation, epigenetic rewiring, and tumor microenvironmental feedback. In NRAS-mutant subtypes, MEK inhibition, CDK4/6 blockade, and immune checkpoint inhibition offer partial efficacy, yet monotherapies fail to achieve sustained responses. Emerging strategies focus on combinatorial regimens targeting RAF-MEK-ERK and PI3K-AKT axes, alongside immunotherapeutic integration. Rarer alterations in KIT and RTKs also define actionable subsets. This review synthesizes recent mechanistic insights and therapeutic advances in mutation-driven melanoma, highlighting the promise of biomarker-guided combination strategies and signaling crosstalk disruption as the next frontier in precision oncology.</p>","PeriodicalId":12448,"journal":{"name":"Frontiers in Cell and Developmental Biology","volume":"13 ","pages":"1723066"},"PeriodicalIF":4.6,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12846969/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146084998","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deciphering the interplay between inflammation and dysregulated autophagy in lupus nephritis through network analysis and experimental validation. 通过网络分析和实验验证解读狼疮性肾炎炎症与失调自噬之间的相互作用。
IF 4.6 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2026-01-14 eCollection Date: 2026-01-01 DOI: 10.3389/fcell.2026.1764975
Runrun Zhang, Xin Lv, Qice Sun, Wenhan Huang, Ting Zhao

Background: Autophagy dysregulation plays an important role in the development and progression of lupus nephritis (LN). However, the key autophagy-related genes involved in LN and their underlying cellular mechanisms remain unclear. This study aims to systematically explore the autophagy-related molecular signatures of LN and to elucidate the relevant mechanisms.

Methods: Transcriptomic data from LN and control kidney tissues were analyzed to identify differentially expressed genes (DEGs), followed by KEGG, GSEA, and GSVA enrichment. Autophagy-related DEGs (ARDEGs) were obtained by intersecting DEGs with autophagy gene sets. Hub genes were screened using PPI network analysis, cytoHubba algorithms, and WGCNA. Diagnostic performance was assessed by ROC curves and a nomogram. Single-cell datasets and qRT-PCR, pathology, TEM, and immunohistochemistry were used for validation. Functional assays were conducted in CIHP-1 podocytes with stable EGFR overexpression.

Results: A total of 445 ARDEGs were identified, enriched in autophagy, PI3K-Akt/mTOR, and MAPK pathways. Eleven hub genes were obtained, among which EGFR and RAF1 showed strong diagnostic value (AUC >0.90) and correlations with immune infiltration. Single-cell and experimental validation revealed elevated EGFR expression in LN. EGFR-overexpressing podocytes exhibited increased MDC fluorescence by flow cytometry, autophagosome accumulation by TEM, and a significant increase in LC3-positive puncta by confocal microscopy.

Conclusion: EGFR is a key regulatory factor related to autophagy in LN. The excessive activation of EGFR affects the autophagy of LN podocytes, providing new mechanistic insights and potential therapeutic targets for LN.

背景:自噬失调在狼疮性肾炎(LN)的发生发展中起着重要作用。然而,参与LN的关键自噬相关基因及其潜在的细胞机制尚不清楚。本研究旨在系统探索LN自噬相关的分子特征,并阐明其相关机制。方法:分析LN和对照肾组织的转录组学数据,鉴定差异表达基因(DEGs),然后进行KEGG、GSEA和GSVA富集。自噬相关基因(ARDEGs)是通过将DEGs与自噬基因集交叉得到的。使用PPI网络分析、cytoHubba算法和WGCNA筛选枢纽基因。诊断表现通过ROC曲线和nomogram进行评估。单细胞数据集和qRT-PCR、病理、透射电镜和免疫组织化学用于验证。对EGFR稳定过表达的CIHP-1足细胞进行功能检测。结果:共鉴定出445个ARDEGs,富集于自噬、PI3K-Akt/mTOR和MAPK通路。获得11个枢纽基因,其中EGFR和RAF1具有较强的诊断价值(AUC >0.90),且与免疫浸润相关。单细胞和实验验证显示LN中EGFR表达升高。流式细胞术显示过表达egfr的足细胞显示MDC荧光增加,透射电镜显示自噬体积累,共聚焦显微镜显示lc3阳性点显著增加。结论:EGFR是LN自噬的关键调控因子。EGFR的过度激活影响LN足细胞的自噬,为LN提供了新的机制见解和潜在的治疗靶点。
{"title":"Deciphering the interplay between inflammation and dysregulated autophagy in lupus nephritis through network analysis and experimental validation.","authors":"Runrun Zhang, Xin Lv, Qice Sun, Wenhan Huang, Ting Zhao","doi":"10.3389/fcell.2026.1764975","DOIUrl":"10.3389/fcell.2026.1764975","url":null,"abstract":"<p><strong>Background: </strong>Autophagy dysregulation plays an important role in the development and progression of lupus nephritis (LN). However, the key autophagy-related genes involved in LN and their underlying cellular mechanisms remain unclear. This study aims to systematically explore the autophagy-related molecular signatures of LN and to elucidate the relevant mechanisms.</p><p><strong>Methods: </strong>Transcriptomic data from LN and control kidney tissues were analyzed to identify differentially expressed genes (DEGs), followed by KEGG, GSEA, and GSVA enrichment. Autophagy-related DEGs (ARDEGs) were obtained by intersecting DEGs with autophagy gene sets. Hub genes were screened using PPI network analysis, cytoHubba algorithms, and WGCNA. Diagnostic performance was assessed by ROC curves and a nomogram. Single-cell datasets and qRT-PCR, pathology, TEM, and immunohistochemistry were used for validation. Functional assays were conducted in CIHP-1 podocytes with stable EGFR overexpression.</p><p><strong>Results: </strong>A total of 445 ARDEGs were identified, enriched in autophagy, PI3K-Akt/mTOR, and MAPK pathways. Eleven hub genes were obtained, among which EGFR and RAF1 showed strong diagnostic value (AUC >0.90) and correlations with immune infiltration. Single-cell and experimental validation revealed elevated EGFR expression in LN. EGFR-overexpressing podocytes exhibited increased MDC fluorescence by flow cytometry, autophagosome accumulation by TEM, and a significant increase in LC3-positive puncta by confocal microscopy.</p><p><strong>Conclusion: </strong>EGFR is a key regulatory factor related to autophagy in LN. The excessive activation of EGFR affects the autophagy of LN podocytes, providing new mechanistic insights and potential therapeutic targets for LN.</p>","PeriodicalId":12448,"journal":{"name":"Frontiers in Cell and Developmental Biology","volume":"14 ","pages":"1764975"},"PeriodicalIF":4.6,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12846945/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146085119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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