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The link between the ANPEP gene and type 2 diabetes mellitus may be mediated by the disruption of glutathione metabolism and redox homeostasis ANPEP 基因与 2 型糖尿病之间的联系可能是通过破坏谷胱甘肽代谢和氧化还原平衡介导的。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-11-01 DOI: 10.1016/j.gene.2024.149050
Yaroslava Korvyakova , Iuliia Azarova , Elena Klyosova , Maria Postnikova , Victor Makarenko , Olga Bushueva , Maria Solodilova , Alexey Polonikov
Aminopeptidase N (ANPEP), a membrane-associated ectoenzyme, has been identified as a susceptibility gene for type 2 diabetes (T2D) by genome-wide association and transcriptome studies; however, the mechanisms by which this gene contributes to disease pathogenesis remain unclear. The aim of this study was to determine the comprehensive contribution of ANPEP polymorphisms to T2D risk and annotate the underlying mechanisms. A total of 3206 unrelated individuals including 1579 T2D patients and 1627 controls were recruited for the study. Twenty-three common functional single nucleotide polymorphisms (SNP) of ANPEP were genotyped by the MassArray-4 system. Six polymorphisms, rs11073891, rs12898828, rs12148357, rs9920421, rs7111, and rs25653, were found to be associated with type 2 diabetes (Pperm ≤ 0.05). Common haplotype rs9920421G-rs4932143G-rs7111T was strongly associated with increased risk of T2D (Pperm = 5.9 × 10–12), whereas two rare haplotypes such as rs9920421G-rs4932143C-rs7111T (Pperm = 6.5 × 10–40) and rs12442778A-rs12898828A-rs6496608T-rs11073891C (Pperm = 1.0 × 10–7) possessed strong protection against disease. We identified 38 and 109 diplotypes associated with T2D risk in males and females, respectively (FDR ≤ 0.05). ANPEP polymorphisms showed associations with plasma levels of fasting blood glucose, aspartate aminotransferase, total protein and glutathione (P < 0.05), and several haplotypes were strongly associated with the levels of reactive oxygen species and uric acid (P < 0.0001). A deep literature analysis has facilitated the formulation of a hypothesis proposing that increased plasma levels of ANPEP as well as liver enzymes such as aspartate aminotransferase, alanine aminotransferase and gammaglutamyltransferase serve as an adaptive response directed towards the restoration of glutathione deficiency in diabetics by stimulating the production of amino acid precursors for glutathione biosynthesis.
氨基肽酶 N(ANPEP)是一种与膜相关的外切酶,已被全基因组关联和转录组研究确定为 2 型糖尿病(T2D)的易感基因;然而,该基因对疾病发病机制的作用机制仍不清楚。本研究旨在确定 ANPEP 多态性对 T2D 风险的综合贡献,并注释其潜在机制。该研究共招募了 3206 名无血缘关系的个体,包括 1579 名 T2D 患者和 1627 名对照者。通过 MassArray-4 系统对 ANPEP 的 23 个常见功能性单核苷酸多态性(SNP)进行了基因分型。研究发现,rs11073891、rs12898828、rs12148357、rs9920421、rs7111 和 rs25653 这六个多态性与 2 型糖尿病相关(Pperm ≤ 0.05)。常见单倍型 rs9920421G-rs4932143G-rs7111T 与 T2D 风险增加密切相关(Pperm = 5.9 × 10-12),而两种罕见单倍型如 rs9920421G-rs4932143C-rs7111T (Pperm = 6.5 × 10-40)和 rs12442778A-rs12898828A-rs6496608T-rs11073891C (Pperm = 1.0 × 10-7)等两个罕见单倍型对疾病具有很强的保护作用。我们在男性和女性中分别发现了 38 个和 109 个与 T2D 风险相关的二联型(FDR ≤ 0.05)。ANPEP 多态性与血浆中的空腹血糖、天冬氨酸氨基转移酶、总蛋白和谷胱甘肽水平有关(P
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引用次数: 0
Oncogenic role of lncRNA SBF2-AS1 in bladder cancer lncRNA SBF2-AS1 在膀胱癌中的致癌作用
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-30 DOI: 10.1016/j.gene.2024.149061
Edymara dos Anjos Oliveira , Tamires Cunha Almeida , Glenda Nicioli da Silva

Introduction

Bladder cancer is a malignant neoplasm with increasing incidence rates. LncRNAs play an important role in cancer, including development, prognosis, and response to therapies. It is known that lncRNA SBF2-AS1 was associated with cell proliferation and worse prognosis in various tumor types, but its role remains incompletely understood in bladder cancer. In this context, our objective was to evaluate the effect of lncRNA SBF2-AS1 silencing on bladder cancer cells.

Methods

J82 and UM-UC-3 high-grade bladder tumor cells were treated with two siRNAs specific for SBF2-AS1 to evaluate cytotoxicity, clonogenic survival, morphology, cell migration, and cell cycle progression.

Results

Expression inhibition of SBF2-AS1 resulted in cytotoxicity, morphological changes, and decreased clone formation and cell migration. Cell cycle alterations were not observed.

Conclusion

Our study revealed that SBF2-AS1 plays an oncogenic role and holds promise as a potential target for the treatment of bladder cancer.
导言膀胱癌是一种发病率不断上升的恶性肿瘤。LncRNA 在癌症的发生、预后和治疗反应等方面发挥着重要作用。众所周知,lncRNA SBF2-AS1与多种肿瘤类型中的细胞增殖和不良预后有关,但其在膀胱癌中的作用仍不完全清楚。在这种情况下,我们的目的是评估沉默 lncRNA SBF2-AS1 对膀胱癌细胞的影响:方法:用两种特异性 SBF2-AS1 的 siRNA 处理 J82 和 UM-UC-3 高级别的膀胱肿瘤细胞,以评估细胞毒性、克隆性存活、形态、细胞迁移和细胞周期进展:结果:抑制 SBF2-AS1 的表达会导致细胞毒性、形态变化、克隆形成和细胞迁移减少。结论:我们的研究发现,SBF2-AS1 的表达抑制导致细胞毒性、形态学变化、克隆形成和细胞迁移减少,但未观察到细胞周期改变:我们的研究表明,SBF2-AS1 具有致癌作用,有望成为治疗膀胱癌的潜在靶点。
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引用次数: 0
Gene Expression Profiling of Maslinic Acid-treated MCF-7 Breast Cancer Cells Using Nanostring nCounter Pancancer Pathway Panel. 使用 Nanostring nCounter Pancancer pathway Panel 对马斯林酸处理的 MCF-7 乳腺癌细胞进行基因表达谱分析。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-30 DOI: 10.1016/j.gene.2024.149043
Soon Yan Tan, Chai Nien Foo, Foong Leng Ng, Chee Hong Tan, Yang Mooi Lim

Breast cancer remains a significant global health concern, impacting millions of women every year. Maslinic acid (MA), a pentacyclic triterpene has been found to exert promising anticancer effect in various cancers, including breast cancer, yet the underlying mechanisms remain unclear. This study aims to elucidate the anticancer properties of MA via gene expression profiles in breast cancer cells. Cytotoxicity assay results revealed that MCF-7 exerts the highest sensitivity after 72 h of MA treatment followed by T-47D and MDA-MB-231. MCF-7 were then selected for in-depth analysis using the Nanostring nCounter Pancancer Pathway Panel to analyze the differential expression of genes (DEGs). Across three time points (24, 48, and 72 h), 20 significant DEGs were identified, of which 5 were upregulated and 15 were downregulated. In silico analysis indicated that these DEGs were involved in Pathway of Cancer, Focal Adhesion-PI3K-mTOR Signaling Pathway, PI3K-Akt, and Ras Signaling Pathway. The regulation of these DEGs contributes to several cellular activities such as apoptosis, inhibition of cell proliferation, cell cycle and survival, reduction of glycolysis, angiogenesis, and DNA repair. Additionally, the unfolded protein response emerged as a noteworthy biological process in this study. This study unravels the molecular mechanisms underpinning the therapeutic potential of MA against breast cancer.

乳腺癌仍然是全球关注的重大健康问题,每年影响着数百万妇女。马斯林酸(MA)是一种五环三萜类化合物,已被发现对包括乳腺癌在内的多种癌症具有良好的抗癌作用,但其潜在机制仍不清楚。本研究旨在通过乳腺癌细胞的基因表达谱来阐明 MA 的抗癌特性。细胞毒性检测结果显示,MCF-7 在 MA 处理 72 小时后的敏感性最高,其次是 T-47D 和 MDA-MB-231。然后,利用 Nanostring nCounter Pancancer Pathway Panel 选择 MCF-7 进行深入分析,以分析基因(DEG)的差异表达。在三个时间点(24、48 和 72 小时)上,发现了 20 个重要的 DEGs,其中 5 个上调,15 个下调。硅学分析表明,这些 DEGs 参与了癌症通路、病灶粘附-PI3K-mTOR 信号通路、PI3K-Akt 和 Ras 信号通路。这些 DEGs 的调控有助于多种细胞活动,如细胞凋亡、抑制细胞增殖、细胞周期和存活、减少糖酵解、血管生成和 DNA 修复。此外,未折叠蛋白反应也是本研究中一个值得注意的生物过程。这项研究揭示了 MA 对乳腺癌治疗潜力的分子机制。
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引用次数: 0
Variants that get straight to your heart – Cardiogenetic secondary findings in exome sequencing 直达心脏的变异--外显子测序中的心脏遗传学二次发现。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-30 DOI: 10.1016/j.gene.2024.149063
Kirsten Wenderholm , Theresa Brunet , Elisabeth Graf , Marie Arens , Eimo Martens , Juliane Winkelmann , Julia Hoefele , Dominik S. Westphal

Background

Exome sequencing has been established as a fundamental tool in genetic diagnostics. It may also provide information about variants in genes unrelated to the primary purpose, so-called secondary findings. Especially, diagnoses of unnoticed inborn cardiac diseases are of high clinical relevance due to therapeutic options in context of prevention of sudden cardiac death.

Methods

Exome data of 9962 individuals was analysed for relevant cardiogenetic findings. Genes were selected according to ACMG recommendations for secondary findings (v.3.1). First, a filter for (likely) pathogenic variants, published in the ClinVar database, was used. Second, exome data was screened for loss of function (LoF) variants in genes in which LoF is a known disease pathomechanism. All variants were evaluated by geneticists regarding their pathogenicity.

Results

Pathogenic or likely pathogenic variants were identified in 136 different individuals (136/9962, 1.4%), with the Low-Density Lipoprotein Receptor gene (LDLR, 24/136, 17.6%) and the Titin gene (TTN, 24/136, 17.6%), being the most frequently affected ones. 31.6% (43/136) of the identified variants had been reported beforehand, while 47.1% (64/136) had not been reported. The remaining cases (29/136, 21.3%) were part of research projects with no written reports. In 26.5% (36/136), the finding would have been missed, if only index patients and not their parents had been screened for secondary findings in case of trio ES.

Conclusion

As demonstrated in our study, at least one or two out of one hundred people are likely to carry a pathogenic cardiogenetic variant. Counselling geneticist and clinicians need to be aware of these findings in exome and genome sequencing. Informed consent of the patient regarding the report of secondary findings should absolutely be obtained beforehand.
背景:外显子组测序已成为基因诊断的基本工具。它还可以提供与主要目的无关的基因变异信息,即所谓的次要发现。特别是,对未被发现的先天性心脏病的诊断具有很高的临床意义,因为这关系到预防心脏性猝死的治疗方案:方法:分析了 9962 人的外显子组数据,以寻找相关的心脏遗传学发现。根据 ACMG 推荐的次要结果(v.3.1)选择基因。首先,使用 ClinVar 数据库中公布的(可能)致病变异筛选器。其次,筛选外显子组数据中的功能缺失(LoF)变异,因为LoF是一种已知的疾病病理机制。遗传学家对所有变异的致病性进行了评估:结果:在 136 个不同个体(136/9962,1.4%)中发现了致病或可能致病的变体,其中受影响最频繁的是低密度脂蛋白受体基因(LDLR,24/136,17.6%)和 Titin 基因(TTN,24/136,17.6%)。31.6%(43/136)的已发现变异基因事先已被报告,而 47.1%(64/136)的变异基因尚未被报告。其余病例(29/136,21.3%)属于没有书面报告的研究项目。如果只筛查指标病人,而不筛查他们的父母,那么有 26.5%(36/136 例)的三重 ES 患者会被漏诊:结论:我们的研究表明,一百个人中至少有一两个人可能携带致病性心脏基因变异体。遗传咨询师和临床医生需要了解外显子组和基因组测序的这些发现。在报告次要发现时,应事先征得患者的知情同意。
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引用次数: 0
Gardner syndrome in a Tunisian family: Identification of a rare APC mutation through targeted NGS. 一个突尼斯家庭的加德纳综合征:通过靶向 NGS 鉴定出罕见的 APC 突变。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-30 DOI: 10.1016/j.gene.2024.149065
Rania Abdelmaksoud-Dammak, Nihel Ammous-Boukhris, Souhir Guidara, Hassen Kamoun, Hela Gdoura, Baha Barkia, Mouna Boudabbous, Nabil Tahri, Hazem Ben Ameur, Salah Boujelbene, Raja Mokdad Gargouri

Gardner syndrome (GS) is a subtype of familial adenomatous polyposis (FAP) characterized by colorectal polyps, multiple osteomas, soft tissue tumors, and specific oral manifestations, such as jaw osteomas. GS is caused by mutations in the APC gene, resulting in a nonfunctional protein. This study reports a comprehensive clinical evaluation and genetic analysis of a Tunisian family affected by GS. Targeted exome sequencing and Sanger sequencing techniques were employed to identify and validate mutations in the APC gene. Clinical observations of the patient revealed multiple sebaceous cysts, frontal and maxillary osteomas, and several gastrointestinal polyps. Genetic analysis revealed a pathogenic variant (c.4652-4655del) in the APC gene, leading to a truncated protein. Additionally, genetic testing of the patient's child indicated that the child does not carry the APC pathogenic variant. In conclusion, our study highlights the importance of genetic testing in raising awareness of GS among clinicians to ensure early diagnosis and effective management, thereby reducing the risk of development and progression of colorectal cancer.

加德纳综合征(GS)是家族性腺瘤性息肉病(FAP)的一种亚型,以结直肠息肉、多发性骨瘤、软组织肿瘤和特殊口腔表现(如颌骨骨瘤)为特征。GS是由APC基因突变导致的无功能蛋白引起的。本研究报告了一个突尼斯GS家族的综合临床评估和遗传分析。该研究采用了靶向外显子组测序和桑格测序技术来鉴定和验证 APC 基因的突变。对患者的临床观察发现了多发性皮脂腺囊肿、额骨和上颌骨骨瘤以及数个胃肠道息肉。基因分析显示,APC 基因存在致病变异(c.4652-4655del),导致蛋白截短。此外,对患者子女的基因检测表明,其子女并不携带 APC 致病变体。总之,我们的研究强调了基因检测在提高临床医生对 GS 的认识方面的重要性,以确保早期诊断和有效管理,从而降低结直肠癌发展和恶化的风险。
{"title":"Gardner syndrome in a Tunisian family: Identification of a rare APC mutation through targeted NGS.","authors":"Rania Abdelmaksoud-Dammak, Nihel Ammous-Boukhris, Souhir Guidara, Hassen Kamoun, Hela Gdoura, Baha Barkia, Mouna Boudabbous, Nabil Tahri, Hazem Ben Ameur, Salah Boujelbene, Raja Mokdad Gargouri","doi":"10.1016/j.gene.2024.149065","DOIUrl":"10.1016/j.gene.2024.149065","url":null,"abstract":"<p><p>Gardner syndrome (GS) is a subtype of familial adenomatous polyposis (FAP) characterized by colorectal polyps, multiple osteomas, soft tissue tumors, and specific oral manifestations, such as jaw osteomas. GS is caused by mutations in the APC gene, resulting in a nonfunctional protein. This study reports a comprehensive clinical evaluation and genetic analysis of a Tunisian family affected by GS. Targeted exome sequencing and Sanger sequencing techniques were employed to identify and validate mutations in the APC gene. Clinical observations of the patient revealed multiple sebaceous cysts, frontal and maxillary osteomas, and several gastrointestinal polyps. Genetic analysis revealed a pathogenic variant (c.4652-4655del) in the APC gene, leading to a truncated protein. Additionally, genetic testing of the patient's child indicated that the child does not carry the APC pathogenic variant. In conclusion, our study highlights the importance of genetic testing in raising awareness of GS among clinicians to ensure early diagnosis and effective management, thereby reducing the risk of development and progression of colorectal cancer.</p>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142564208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The pertinence of resistin gene single nucleotide polymorphism G > A and its expression in oral cancer 抗阻素基因单核苷酸多态性 G > A 及其在口腔癌中表达的相关性。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-30 DOI: 10.1016/j.gene.2024.149062
Kiran Arif , Fouzia Shaikh , Rizma Khan , Faraz Ahmed Baig , Talat Mirza

Background/aim

Oral cancer (OC) is the leading cause of fatalities in Pakistan among males due to inadequate oral hygiene and chewing habits. However, genetic susceptibility patterns also play a critical role in disease progression. Since the frequency of Resistin (RETN) SNP (Single nucleotide polymorphism) rs3219175 is unknown; there is a requirement for early diagnosis of the OC. Therefore, the current study aims to determine the frequency of targeted SNP and develop a safe, simple, and fast alternative technique for better treatment using a real-time PCR assay with HRM (high-resolution melting curve) analysis.

Materials and methods

A case-control study was conducted on 35 Oral squamous cell carcinomas (OSCC) diagnosed patients and 35 healthy individuals. HRM and RT-PCR results were analysed by the bioinformatics analyses.

Results

The frequency of RETN SNP rs3219175 genotypes GG and GA in male patients was 16 (46 %) and 5 (14 %) respectively and in females 8 (23 %) and 6 (17 %) respectively. The chi-square test of independence consummated the assessment between males and females in both control and patients. The relation between these variables was significant (p < 0.05). The interaction network of String 8.3 demonstrates strong interactions at a high confidence score, which helps to characterize functional disorders that may be a causative factor for oral pathology. Reactome and KEGG data were acquired to rule out the pathway involvement of the targeted gene. MuPIT software was used to identify the 3D structure or RETN and their expected mutation effect.

Conclusion

This study provides baseline data regarding the frequency of RETN SNP rs3219175 among the Pakistani population. For further clarification of their stage in cancer emergence and growth, large-scale studies must be conducted. This study might be helpful in the precision medicine approach and provide better therapeutic for OSCC patients.
背景/目的:在巴基斯坦,由于口腔卫生和咀嚼习惯不足,口腔癌(OC)是导致男性死亡的主要原因。然而,遗传易感性模式在疾病进展中也起着至关重要的作用。由于 Resistin (RETN) SNP(单核苷酸多态性)rs3219175 的频率尚不清楚,因此需要对口腔癌进行早期诊断。因此,本研究旨在确定目标 SNP 的频率,并开发一种安全、简单、快速的替代技术,利用实时 PCR 分析和 HRM(高分辨率熔解曲线)分析进行更好的治疗:对35名确诊的口腔鳞状细胞癌(OSCC)患者和35名健康人进行了病例对照研究。通过生物信息学分析对 HRM 和 RT-PCR 结果进行了分析:男性患者中 RETN SNP rs3219175 基因型 GG 和 GA 的频率分别为 16 (46 %) 和 5 (14 %),女性患者中分别为 8 (23 %) 和 6 (17 %)。独立的卡方检验完成了对对照组和患者中男性和女性的评估。这些变量之间的关系是显著的(P本研究提供了有关巴基斯坦人群中 RETN SNP rs3219175 频率的基线数据。要进一步明确它们在癌症发生和发展中的作用,必须进行大规模的研究。这项研究可能有助于精准医疗方法,为 OSCC 患者提供更好的治疗。
{"title":"The pertinence of resistin gene single nucleotide polymorphism G > A and its expression in oral cancer","authors":"Kiran Arif ,&nbsp;Fouzia Shaikh ,&nbsp;Rizma Khan ,&nbsp;Faraz Ahmed Baig ,&nbsp;Talat Mirza","doi":"10.1016/j.gene.2024.149062","DOIUrl":"10.1016/j.gene.2024.149062","url":null,"abstract":"<div><h3>Background/aim</h3><div>Oral cancer (OC) is the leading cause of fatalities in Pakistan among males due to inadequate oral hygiene and chewing habits. However, genetic susceptibility patterns also play a critical role in disease progression. Since the frequency of <em>Resistin</em> (<em>RETN)</em> SNP (Single nucleotide polymorphism) <em>rs3219175</em> is unknown; there is a requirement for early diagnosis of the OC. Therefore, the current study aims to determine the frequency of targeted SNP and develop a safe, simple, and fast alternative technique for better treatment using a real-time PCR assay with HRM (high-resolution melting curve) analysis.</div></div><div><h3>Materials and methods</h3><div>A case-control study was conducted on 35 Oral squamous cell carcinomas (OSCC) diagnosed patients and 35 healthy individuals. HRM and RT-PCR results were analysed by the bioinformatics analyses.</div></div><div><h3>Results</h3><div>The frequency of <em>RETN</em> SNP <em>rs3219175</em> genotypes GG and GA in male patients was 16 (46 %) and 5 (14 %) respectively and in females 8 (23 %) and 6 (17 %) respectively. The chi-square test of independence consummated the assessment between males and females in both control and patients. The relation between these variables was significant (p &lt; 0.05). The interaction network of String 8.3 demonstrates strong interactions at a high confidence score, which helps to characterize functional disorders that may be a causative factor for oral pathology. Reactome and KEGG data were acquired to rule out the pathway involvement of the targeted gene. MuPIT software was used to identify the 3D structure or RETN and their expected mutation effect.</div></div><div><h3>Conclusion</h3><div>This study provides baseline data regarding the frequency of <em>RETN</em> SNP <em>rs3219175</em> among the Pakistani population. For further clarification of their stage in cancer emergence and growth, large-scale studies must be conducted. This study might be helpful in the precision medicine approach and provide better therapeutic for OSCC patients.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The impact of cathepsins on liver hepatocellular carcinoma: Insights from genetic and functional analyses cathepsins 对肝脏肝细胞癌的影响:遗传和功能分析的启示。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-30 DOI: 10.1016/j.gene.2024.149064
Qi Liu , Junyi Chen , Yuyang Liu , Shengwei Zhang , Hui Feng , Tao Wan , Shemin Zhang , Ning Zhang , Zhanyu Yang
Liver Hepatocellular Carcinoma (LIHC), ranked as the second deadliest cancer globally, poses a major health challenge because of its widespread occurrence and poor prognosis. The mechanisms underlying LIHC development and progression remain unclear. Cathepsins are linked to tumorigenesis in other cancers, but their role in LIHC is underexplored. This study employed integrative analyses, including Mendelian Randomization (MR), bulk RNA-sequencing (bulk-seq), single-cell RNA sequencing (scRNA-seq), immunohistochemical (IHC) analysis, and cellular experiments with siRNA technology, to investigate the role of cathepsin E (CTSE) in LIHC. MR analysis identified CTSE as a factor associated with increased LIHC risk. Prognostic analysis using TCGA data showed that higher CTSE levels are linked to poorer survival, establishing CTSE as an independent prognostic risk factor. Integrative transcriptome analysis revealed close relation of CTSE to the extracellular matrix. scRNA-seq from TISCH2 demonstrated that CTSE is predominantly expressed in malignant LIHC cells. IHC confirmed higher CTSE expression in LIHC tissues compared to peritumoral tissues. Functional assays, such as qRT-PCR, Western blot, cell proliferation, and colony formation experiments, demonstrated that siRNA-mediated CTSE knockdown in HepG2 and Huh7 cell lines notably suppressed cell proliferation and altered the FAK/Paxillin/Akt signaling cascade. This research enhances our comprehension of LIHC development, emphasizing CTSE as a promising prognostic marker and potential therapeutic target. Inhibiting CTSE could slow the progression of LIHC, presenting novel opportunities for therapeutic approaches.
肝细胞癌(LIHC)被列为全球第二大致命癌症,因其发病率高、预后差而对健康构成重大挑战。肝癌细胞癌的发生和发展机制尚不清楚。胰蛋白酶与其他癌症的肿瘤发生有关,但它们在 LIHC 中的作用尚未得到充分探索。本研究采用综合分析方法,包括孟德尔随机化(Mendelian Randomization,MR)、批量RNA测序(bulk-seq)、单细胞RNA测序(scRNA-seq)、免疫组化(IHC)分析和使用siRNA技术的细胞实验,研究鲶鱼蛋白酶E(CTSE)在LIHC中的作用。磁共振分析发现,CTSE是增加LIHC风险的相关因素。利用TCGA数据进行的预后分析表明,较高的CTSE水平与较差的生存率有关,从而确定CTSE是一个独立的预后风险因素。整合转录组分析显示,CTSE与细胞外基质密切相关。来自TISCH2的scRNA-seq表明,CTSE主要在恶性LIHC细胞中表达。IHC 证实,与瘤周组织相比,CTSE 在 LIHC 组织中的表达更高。qRT-PCR、Western印迹、细胞增殖和集落形成实验等功能测试表明,在HepG2和Huh7细胞系中,siRNA介导的CTSE敲除明显抑制了细胞增殖,并改变了FAK/Paxillin/Akt信号级联。这项研究加深了我们对LIHC发展的理解,强调了CTSE是一种有前景的预后标志物和潜在的治疗靶点。抑制CTSE可减缓LIHC的进展,为治疗方法提供新的机遇。
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引用次数: 0
Mitochondrial genome of Neuryurus rudis (Xenarthra, Cingulata); contribution to phylogeny and origin of glyptodonts. Neuryurus rudis(Xenarthra,Cingulata)的线粒体基因组;对石龙子系统发育和起源的贡献。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-29 DOI: 10.1016/j.gene.2024.149059
Luciano Brambilla, Damián A Ibarra, María Carolina Barboza, Edgardo G Bresso, Germán Rosano, Germán Pérez, Pablo Straccia, Rubén D Scian, Lucas R Brun

The remarkable glyptodonts have sparked the interest of evolutionary biologists since the 19th century, in their attempts to elucidate the phylogenetic relationships among the various species of these armored giants and their relationship with other xenarthrans. In recent years, the molecular analysis of the first glyptodont has included them within the cingulates, as a special group of armadillos that lost the mobility of the bands of their armor during their evolutionary history. In this research, we obtained the mitochondrial DNA sequence of the elusive and poorly known glyptodont Neuryurus rudis, inferring its phylogenetic position with respect to the glyptodont Doedicurus sp. and extant armadillos. This study reaffirms glyptodonts as a subgroup of cingulates, with Neuryurus and Doedicurus sharing a common ancestor from the late Oligocene or early Miocene and traces the group's origin back to an armadillo ancestor in the Eocene.

自 19 世纪以来,非凡的石龙子就引起了进化生物学家的兴趣,他们试图阐明这些装甲巨兽不同物种之间的系统发育关系,以及它们与其他异地动物的关系。近年来,对第一种草履虫的分子分析将它们归入有齿类,作为犰狳的一个特殊类群,它们在进化过程中失去了铠甲带的活动性。在这项研究中,我们获得了难以捉摸、鲜为人知的草履虫 Neuryurus rudis 的线粒体 DNA 序列,推断了它与草履虫 Doedicurus sp.和现存犰狳的系统发育位置。这项研究再次证实了草蜻蛉是有齿类动物的一个亚群,Neuryurus 和 Doedicurus 有一个来自渐新世晚期或中新世早期的共同祖先,并将该类群的起源追溯到始新世的犰狳祖先。
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引用次数: 0
CircRNA regulates lung cancer metastasis CircRNA 调控肺癌转移。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-29 DOI: 10.1016/j.gene.2024.149060
Han Li , Fan wu , Yaqi Han , Ziyi Guo , Tangbing Chen , Zhongliang Ma
Lung cancer stands prominently among the foremost contributors to human mortality, distinguished by its elevated fatality rate and the second-highest incidence rate among malignancies. The metastatic dissemination of lung cancer stands as a primary determinant of its elevated mortality and recurrence rates, underscoring the imperative for comprehensive investigation into its metastatic pathways. Circular RNAs (circRNAs), a subclass of non-coding RNA (ncRNA) molecules, have garnered attention for their pivotal involvement in the genesis and advancement of lung cancer. Emerging evidence highlights the indispensable functions of circRNAs in orchestrating the metastatic cascade of lung cancer. This review primarily discusses the mechanisms by which circRNAs act as competitive endogenous RNAs (ceRNAs) and modulate various signaling pathways to regulate lung cancer metastasis. CircRNAs influence critical cellular processes including angiogenesis, autophagy, and glycolysis, thereby exerting influence over the metastatic cascade in lung cancer. These discoveries offer innovative perspectives and therapeutic avenues for the diagnosis and management of lung cancer.
肺癌是导致人类死亡的最主要因素之一,其致死率较高,发病率在恶性肿瘤中位居第二。肺癌的转移播散是其死亡率和复发率升高的主要决定因素,这就强调了对其转移途径进行全面研究的必要性。环状 RNA(circRNA)是非编码 RNA 分子的一个亚类,因其在肺癌发生和发展过程中的关键作用而备受关注。新出现的证据强调了 circRNA 在协调肺癌转移级联过程中不可或缺的功能。本综述主要讨论 circRNAs 作为竞争性内源性 RNAs(ceRNAs)调节各种信号通路以调控肺癌转移的机制。循环RNA影响关键的细胞过程,包括血管生成、自噬和糖酵解,从而对肺癌的转移级联产生影响。这些发现为肺癌的诊断和治疗提供了创新的视角和治疗途径。
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引用次数: 0
Tanshinone T1/T2A inhibits non-small cell lung cancer through Lin28B-let-7-BORA/MYC regulatory network. 丹参酮 T1/T2A 有助于 let-7 抑制非小细胞肺癌。
IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-29 DOI: 10.1016/j.gene.2024.149058
Yanli Li, Ziyi Guo, Ping Li, Jing Guo, Huimin Wang, Wei Pan, Fan Wu, Jingjing Li, Jinrong Zhou, Zhongliang Ma

Background: Lung cancer is the leading cause of cancer-related deaths worldwide. Tanshinones are a group of compounds in Salvia miltiorrhiza. Although the effects of tanshinone I (T1) and tanshinone IIA (T2A) are widely concerned, the mechanisms of T1 and T2A in lung cancer is rarely studied.

Experimental procedure: Xenograft tumor growth was performed to detect the role of T1/T2A in vivo. Next-generation sequencing of miRNA expression profiles in T1/T2A-treated A549 cells showed that T1/T2A upregulated the expression of the let-7 family. Then, let-7a-5p and its downstream target gene BORA were identified as the research objects in this paper. Mechanistically, we examined the interplay between miR-let-7 and BORA through the dual-luciferase reporter assay. Finally, the potential regulatory role of T1/T2A on Lin28B and MYC was explored.

Results: This study found that the let-7 family was significantly up-regulated via "Next-generation" sequencing (NGS) in the T1/T2A-treated A549 cell line, while BORA was downregulated. BORA was confirmed as a direct target of let-7. LncRNA MYCLo-5 was up-regulated after treatment with tanshinones. Knockdown of MYCLo-5 promoted the cell cycle and proliferation of non-small cell lung cancer (NSCLC) cells.

Conclusions: This study explored the effects of tanshinone T1 and T2A on NSCLC in vitro and in vivo, revealing the T1/T2A-let-7/BORA/MYCLo-5 regulatory pathway, which provided new insights for lung cancer treatment.

背景:肺癌是全球癌症相关死亡的首要原因。丹参酮是丹参中的一组化合物。尽管丹参酮Ⅰ(T1)和丹参酮ⅡA(T2A)的作用受到广泛关注,但T1和T2A在肺癌中的作用机制却鲜有研究:实验过程:通过异种移植肿瘤生长来检测T1/T2A在体内的作用。T1/T2A处理的A549细胞中miRNA表达谱的新一代测序显示,T1/T2A上调了let-7家族的表达。随后,本文将let-7a-5p及其下游靶基因BORA确定为研究对象。从机理上讲,我们通过双荧光素酶报告实验研究了 miR-let-7 和 BORA 之间的相互作用。最后,我们还探讨了T1/T2A对Lin28B或MYC的潜在调控作用:结果:本研究通过 "下一代 "测序(NGS)发现,在 T1/T2A 处理过的 A549 细胞系中,let-7 家族明显上调,而 BORA 则下调。BORA 被证实是 let-7 的直接靶标。经丹参酮处理后,LncRNA MYCLo-5 上调。敲除MYCLo-5可促进非小细胞肺癌(NSCLC)的细胞周期和增殖:本研究探讨了丹参酮T1和T2A在体外和体内对NSCLC的影响,揭示了T1/T2A- let-7/ BORA /MYCLo-5调控通路,为肺癌治疗提供了新思路。
{"title":"Tanshinone T1/T2A inhibits non-small cell lung cancer through Lin28B-let-7-BORA/MYC regulatory network.","authors":"Yanli Li, Ziyi Guo, Ping Li, Jing Guo, Huimin Wang, Wei Pan, Fan Wu, Jingjing Li, Jinrong Zhou, Zhongliang Ma","doi":"10.1016/j.gene.2024.149058","DOIUrl":"10.1016/j.gene.2024.149058","url":null,"abstract":"<p><strong>Background: </strong>Lung cancer is the leading cause of cancer-related deaths worldwide. Tanshinones are a group of compounds in Salvia miltiorrhiza. Although the effects of tanshinone I (T1) and tanshinone IIA (T2A) are widely concerned, the mechanisms of T1 and T2A in lung cancer is rarely studied.</p><p><strong>Experimental procedure: </strong>Xenograft tumor growth was performed to detect the role of T1/T2A in vivo. Next-generation sequencing of miRNA expression profiles in T1/T2A-treated A549 cells showed that T1/T2A upregulated the expression of the let-7 family. Then, let-7a-5p and its downstream target gene BORA were identified as the research objects in this paper. Mechanistically, we examined the interplay between miR-let-7 and BORA through the dual-luciferase reporter assay. Finally, the potential regulatory role of T1/T2A on Lin28B and MYC was explored.</p><p><strong>Results: </strong>This study found that the let-7 family was significantly up-regulated via \"Next-generation\" sequencing (NGS) in the T1/T2A-treated A549 cell line, while BORA was downregulated. BORA was confirmed as a direct target of let-7. LncRNA MYCLo-5 was up-regulated after treatment with tanshinones. Knockdown of MYCLo-5 promoted the cell cycle and proliferation of non-small cell lung cancer (NSCLC) cells.</p><p><strong>Conclusions: </strong>This study explored the effects of tanshinone T1 and T2A on NSCLC in vitro and in vivo, revealing the T1/T2A-let-7/BORA/MYCLo-5 regulatory pathway, which provided new insights for lung cancer treatment.</p>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557637","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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