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Bioinformatics approaches for Biomedical Research 生物医学研究的生物信息学方法
Kasandra Aguilar Cázarez, Ernesto Andrade Collantes, Marisol Verdugo Meza, Claudia María de-la-Rocha-Morales, Cruz Fernando López-Carrera, Paúl Alexis López-Durán
An enormous amount of data is generated and compiled in several databases every year. Along with this, comes a demand for the analysis and interpretation of the entirety of this biological information. Taking care of this task, bioinformatics promises breakthroughs in research and development in complex biomedical areas. In just a few years since its beginning, bioinformatics has led to great progress and demonstrated its potential. It has created an opportunity to solve arising medical and molecular issues faster and more efficiently, as compared to the traditional approach. The present review aims to present some of the main applications of bioinformatics in the field of biomedicine, such as comparative genomics, biomarker identification, computer-aided drug design, vaccine design, and personalized medicine. In addition, we also cover some of its steadily reduced limitations.
每年都会产生大量的数据,并在几个数据库中进行编译。随之而来的是对整个生物信息的分析和解释的需求。考虑到这一任务,生物信息学有望在复杂的生物医学领域的研究和开发中取得突破。生物信息学自成立以来,在短短几年内取得了巨大的进步,并展示了其潜力。与传统方法相比,它创造了一个更快、更有效地解决新出现的医学和分子问题的机会。本文综述了生物信息学在生物医学领域的一些主要应用,如比较基因组学、生物标志物鉴定、计算机辅助药物设计、疫苗设计和个性化医疗等。此外,我们还讨论了它的一些逐渐减少的限制。
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引用次数: 0
Philadelphia-positive atypical chronic myeloid leukemia, BCR/ABL negative: a case report 费城阳性非典型慢性髓性白血病,BCR/ABL阴性1例报告
Germán Rivera Monroy, Federica Riccio Cuomo, Dunia Michelle Bustos Campa, Jorge Luis López Marthen
Atypical myeloid leukemia is a myeloproliferative neoplasm in which patients have a dysplastic increase in blood cells of the myeloid lineage as a result of hypercellular bone marrow. Our patient presented a positive Ph karyotype and a negative ABL/BCR transcript. Moreover, her age does not correspond to the mean of diagnosis. Her first treatment was hydroxyurea 1 g/kg for 60 days, which was not positive for the evolution of the disease and thus the elective treatment was changed to imatinib 400 mg/ day. After two months, the treatment has produced a favorable response, which leads to think that the therapy with imatinib offers better clinical results than other conventional ones. This text presents the study carried out at the Manuel Ávila Camacho National Medical Center and compares it with the existing literature regarding diagnosis and treatment to assess similarities and highlight specific points that may help in future case management.
非典型髓系白血病是一种骨髓增生性肿瘤,患者骨髓细胞增多导致髓系血细胞增生异常。我们的病人呈现阳性的Ph核型和阴性的ABL/BCR转录。此外,她的年龄不符合诊断的平均年龄。她的第一次治疗是羟基脲1 g/kg,持续60天,对疾病的发展没有积极作用,因此选择治疗改为伊马替尼400 mg/天。两个月后,治疗产生了良好的反应,这使得我们认为伊马替尼治疗比其他常规治疗有更好的临床效果。本文介绍了在曼纽尔Ávila卡马乔国家医疗中心进行的研究,并将其与现有的关于诊断和治疗的文献进行比较,以评估相似性并突出可能有助于未来病例管理的具体要点。
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引用次数: 0
Probiotic foods as functional foods for modulating obesity 益生菌食品作为调节肥胖的功能性食品
Bárbara Gallegos-Inzunza, Jimena Prado-Ramírez, Alejandra Romo-Araiza
Introduction: Obesity is a multifactorial chronic disease that involves many internal and external factors, causing the death of at least 2.8 million people each year, according to the World Health Organization. Therefore, there is a need for nobler treatments to lose weight. Probiotic foods are classified as functional foods due to their nutritional contribution. Objective: To describe the impact of probiotic foods in the treatment of obesity. Methods: A review of 61 studies from different databases was carried out. Results: It is known that probiotics have several action mechanisms that beneficially affect the gut microbiota to maintain homoeostasis in the whole organism. The relationship between these microorganisms and the control and modulation of a person’s body weight has been observed. Conclusion: The beneficial effects of probiotics are strain-specific and may impact obesity through different action mechanisms, such as abdominal fat decrease, changes in inflammatory biomarkers, microbiota restoration, and reduction in triglycerides serum levels.
导读:肥胖是一种多因素的慢性疾病,涉及许多内部和外部因素,据世界卫生组织称,每年至少有280万人死亡。因此,需要更高贵的减肥方法。益生菌食品因其营养价值而被归类为功能性食品。目的:探讨益生菌食品对肥胖的治疗作用。方法:对来自不同数据库的61项研究进行综述。结果:已知益生菌具有多种作用机制,可对肠道菌群产生有益影响,以维持整个生物体的平衡。已经观察到这些微生物与控制和调节人的体重之间的关系。结论:益生菌的有益作用是菌株特异性的,可能通过不同的作用机制影响肥胖,如减少腹部脂肪、改变炎症生物标志物、恢复微生物群和降低血清甘油三酯水平。
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引用次数: 0
Clinical advances in multiple sclerosis and amyotrophic lateral sclerosis treatment: A review 多发性硬化症和肌萎缩侧索硬化治疗的临床进展综述
Marquelle Zerecero-Morcksharpe, Elisa García-Vences
Neurodegenerative diseases are clinical manifestations that depend on the anatomy and function of the affected areas. Amyotrophic lateral sclerosis (ALS) and multiple sclerosis (MS) are some of these diseases, but they are also autoimmune and their etiology makes treatments limited and of little therapeutic efficacy. Currently, some clinical research advances can be pillars for the development of new treatments for these diseases. Therefore, the objective of this review is to describe the latest clinical advances in ALS and MS as well as their results in clinical recovery in randomized clinical trials, meta-analyzes, and full-text systematic reviews conducted in humans and rats, published in English and Spanish in the last 5 years, using PubMed, SciELO, and Cochrane. For clinical trials to be included, they had to provide a detailed breakdown of randomization methods, diagnostic criteria, intervention details, and efficacy evaluation. The results show that, so far, available medications, like riluzole and edaravone for ALS and fingolimod, dimethyl fumarate, and IFN β-1b for MS, only prolong the life of the patient. Among these drugs are also glutamate neurotransmitter antagonists, immunomodulators and even antioxidants; each of them showed significant improvement in the reviewed trials. Similarly, other non-pharmaceutical treatments, as the 600-mg dose of curcumin in the diet for ALS, showed improvement of the patients’ conditions. Regarding MS, more studies should be carried out on autotransplantation with adiposederived mesenchymal stem cells (AdMSCs) to investigate the potential therapeutic benefit of this technique in phases prior to secondary-progressive (SPMS).
神经退行性疾病是依赖于受累部位解剖和功能的临床表现。肌萎缩性侧索硬化症(ALS)和多发性硬化症(MS)是其中的一些疾病,但它们也是自身免疫性疾病,其病因使治疗受到限制,治疗效果甚微。目前,一些临床研究的进展可以成为开发这些疾病的新疗法的支柱。因此,本综述的目的是描述近5年来在PubMed、SciELO和Cochrane上以英文和西班牙文发表的在人类和大鼠中进行的随机临床试验、荟萃分析和全文系统评价中ALS和MS的最新临床进展及其在临床恢复方面的结果。对于纳入的临床试验,他们必须提供随机化方法、诊断标准、干预细节和疗效评估的详细分类。结果表明,到目前为止,可用的药物,如治疗渐冻症的利鲁唑和依达拉曲,治疗多发性硬化症的芬戈莫德、富马酸二甲酯和IFN β-1b,只能延长患者的生命。这些药物还包括谷氨酸神经递质拮抗剂、免疫调节剂甚至抗氧化剂;在回顾的试验中,他们每个人都表现出显著的改善。同样,其他非药物治疗,如在ALS患者的饮食中加入600毫克的姜黄素,也显示出患者病情的改善。对于多发性硬化症,应该开展更多的脂肪源性间充质干细胞(AdMSCs)自体移植研究,以在继发性进展(SPMS)之前的阶段调查该技术的潜在治疗益处。
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引用次数: 0
Orthostatic response in patients with type 2 diabetes mellitus evaluated through acceleration photoplethysmogram 利用加速光容积图评价2型糖尿病患者的直立反应
J. F. Rivas-Vilchis, E. Barrera-Escorcia
Introduction: One of the striking complications of diabetes mellitus is arterial circulatory dysfunction. The 30:15 ratio is an orthostatic index commonly used to diagnose circulatory alterations in diabetic patients with a long evolution. Indices obtained from the second derivative of photoplethysmogram (SDPPG) or acceleration photoplethysmogram (APG) characterize arterial pathological changes. Aim: To compare the cardiovascular response of non-diabetic subjects to active standing versus that of type-2 diabetes (DM2) patients using APG indices. Methods: Digital photoplethysmography (PPG) was obtained from healthy subjects (n = 15, age ± SD, 44.6 ± 7.2 years) and DM2 patients (n = 15, age ± SD, 48.3 ± 7.9 years). The 30:15 ratio, b/a, d/a, and APG-AI, all APG-based, of the participants were calculated and compared at baseline, 15 and 30 s. Results: Comparison of the 30:15 ratios between groups did not show a significant difference. No significant differences were observed between the APG indices in the two groups in the baseline period. However, d/a decreased, and APG-AI increased significantly at beat 30 after active standing in non-diabetic subjects. Values of APG indices in DM2 patients did not show significant changes. Conclusion: The results suggest that APG indices could be used to detect early vascular dysfunctions in DM2 patients.
糖尿病最显著的并发症之一是动脉循环功能障碍。30:15比率是一种常用于诊断长期演变的糖尿病患者循环改变的直立指数。从光容积描记图(SDPPG)二阶导数或加速光容积描记图(APG)获得的指标表征动脉病理变化。目的:利用APG指数比较非糖尿病受试者与2型糖尿病(DM2)患者对活动站立的心血管反应。方法:获取健康受试者(n = 15,年龄±SD, 44.6±7.2岁)和DM2患者(n = 15,年龄±SD, 48.3±7.9岁)的数字光容积脉搏波(PPG)。计算30:15比率,b/a, d/a和APG-AI,所有基于apg,并在基线,15和30秒进行比较。结果:两组间30:15比值比较无明显差异。基线期两组APG指数无显著差异。然而,非糖尿病受试者在站立后30拍时d/a下降,APG-AI显著升高。DM2患者APG指数无明显变化。结论:APG指标可用于检测DM2患者早期血管功能障碍。
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引用次数: 0
Effect of different bacteria on the biodegradation of polyurethane 不同细菌对聚氨酯生物降解的影响
Karla Castillo-Gaspar, Valeria Román-Ayala, Adriana Domínguez-K Rescala, Karla Ramírez-Gualito
Polyurethane has been used and over-exploited worldwide in the manufacture of different goods, but it is hard to break down and represents an important contaminant due to its accumulation when discarded. Recent research findings have shown that several bacteria and their enzymes can biodegrade various plastics, such as polyurethane. In this review, we sought to group, analyze, and relate the techniques used by different bacterial species to biodegrade polyurethane that have been identified in different studies by searching databases, such as PubMed, Web of Science, and Scopus. Different species of proteobacteria, actinobacteria, and endobacteria biodegrade polyurethane by oxidation and hydrolysis to obtain carbon and nitrogen sources. Changes as weight loss, tensile strength, and chemical and surface changes were observed in polymer properties, showing that biological technologies have a direct impact on polyurethane by modifying the molecule in different ways.
聚氨酯已经在世界范围内被用于制造不同的商品,但它很难分解,并且由于其丢弃时的积累而成为一种重要的污染物。最近的研究结果表明,几种细菌及其酶可以生物降解各种塑料,如聚氨酯。在这篇综述中,我们试图通过检索PubMed、Web of Science和Scopus等数据库,对不同细菌种类用于生物降解聚氨酯的技术进行分组、分析和关联。不同种类的变形菌、放线菌和内细菌通过氧化和水解生物降解聚氨酯以获得碳和氮源。在聚合物性能中观察到失重、拉伸强度、化学和表面变化等变化,表明生物技术通过不同方式改变分子对聚氨酯产生直接影响。
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引用次数: 0
Musculoskeletal pain in college students: a systematic review 大学生肌肉骨骼疼痛:一项系统综述
Galit Wohlmuth-Cohen, Felix León-Avila
Introduction: To date, there is no systematic study focused on posture-related musculoskeletal pain in college students. Objective: Summarize the evidence of musculoskeletal pain in college students. Eligible criteria: Year of publication between 2015 and 2020, observational studies published in English, full text available, and analysis of the presence of musculoskeletal pain in college students. MESH terms and Boolean operators used for the search were pain AND musculoskeletal AND college students. Data sources: Databases used were PubMed, ClinicalKey, ProQuest, ResearchGate, and ScienceDirect. Results: A total of 318 records were identified out of which 296 were excluded, and only 22 were included for analysis. The majority of the records involved college students form the general population, while five involved dental students and five, health science students. The majority of the records involved a setting in which the student was in a constant sitting position, only two involved a dental setting, and one involved a laboratory setting. Conclusions: The most reported sites of pain were neck, shoulders, and upper and lower back.
迄今为止,还没有针对大学生姿势相关肌肉骨骼疼痛的系统研究。目的:总结大学生肌肉骨骼疼痛的相关证据。入选标准:发表年份在2015年至2020年之间,以英文发表的观察性研究,全文可用,并分析大学生肌肉骨骼疼痛的存在。用于搜索的MESH术语和布尔运算符是疼痛和肌肉骨骼和大学生。数据来源:使用的数据库包括PubMed、ClinicalKey、ProQuest、ResearchGate和ScienceDirect。结果:共识别318条记录,排除296条,仅纳入22条进行分析。大多数记录涉及普通人群中的大学生,五个涉及牙科学生,五个涉及健康科学专业的学生。大多数记录都是关于学生保持固定坐姿的,只有两份是关于牙科的,还有一份是关于实验室的。结论:报道最多的疼痛部位是颈部、肩部和上下背部。
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引用次数: 1
Comparison between insulin delivery methods: subcutaneous, inhaled, oral, and buccal 胰岛素给药方式的比较:皮下、吸入、口服和口腔
Bethliza Alejandro Juárez, Patrick Fleischmann-de la Parra, Karla Tania Esmeralda Rayo-Mercado, T. Ponce-Lopez
Diabetes mellitus is a complex and chronic metabolic disorder characterized by hyperglycemia. Part of the treatment for this condition is the administration of insulin, a protein that directly influences blood glucose levels. It is traditionally administered parenterally; however, new alternative ways for its application seek greater efficiency and less invasiveness. The objective of this article is to compare the different methods of insulin administration, taking into account new technologies. This review article provides an overview of diabetes and insulin, highlights the advantages and disadvantages of insulin delivery methods (subcutaneous, inhaled, oral, and buccal), and shows the new technologies that include biotechnological applications.
糖尿病是一种以高血糖为特征的复杂慢性代谢性疾病。治疗这种疾病的部分方法是注射胰岛素,这是一种直接影响血糖水平的蛋白质。传统上是通过静脉注射;然而,新的替代方法为其应用寻求更高的效率和更少的侵入性。本文的目的是比较不同的胰岛素给药方法,考虑到新技术。本文综述了糖尿病和胰岛素的研究概况,强调了胰岛素给药方法(皮下、吸入、口服和口腔)的优缺点,并展示了包括生物技术应用在内的新技术。
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引用次数: 1
Comparison of the phenotypic profile of antimicrobial resistance in the oral microbiota of non-smokers, tobacco smokers, and electronic cigarette vapers - A pilot study 非吸烟者、吸烟者和电子烟使用者口腔微生物群抗菌素耐药性表型的比较-一项试点研究
E. Martínez-Solís, Abraham Atman Hernández-Martínez, Adán Peña-Barreto, T. Barrientos-Fortes, D. Álvarez-Hernández, S. Solano-Gálvez, R. Vázquez-López
Introduction: The microbiota is a community of microorganisms that live in a specific environment. Their type and number depend on multiple internal and external factors. Oral is the second most diverse and populated microbiota of the body. Smoking and vaping induce changes in its composition, and it has been demonstrated that they can lead to an increase in antimicrobial resistance. Objective: To compare the phenotypic profile of antimicrobial resistance in the oral microbiota of non-smokers, tobacco users, and electronic cigarette vapers. Methods: An observational, descriptive, cross-sectional, and comparative study was carried out. Three groups of non-smokers, smokers of conventional tobacco, and electronic cigarette (EC) vapers of tobacco flavored e-juice were formed. Oral cavity samples were obtained, incubated, and seeded in agar plates. Bacteria were isolated and identified performing Gram staining, oxidase, indole, and biochemical test panels. Susceptibility tests were performed using a MicroScan autoSCAN-4 system and the Kirby–Bauer test. Results: Variation was observed in the populations of bacteria that were isolated in each of the groups, but the non-smokers showed the most pathogens. In the non-smoking group, Staphylococcus sciuri was the most common bacteria, Staphylococcus sciuri and Enterobacter cloacae were the most abundant in the smoking group, and in the EC vapers group, the most common bacteria were Staphylococcus epidermidis and Staphylococcus sciuri. Conclusion: Multidrug resistance was observed in all the groups. However, EC vapers showed the highest proportions of antimicrobial resistance, raising a major concern.
微生物群是生活在特定环境中的微生物群落。它们的类型和数量取决于多种内部和外部因素。口腔微生物群是人体中第二多样化和数量最多的微生物群。吸烟和吸电子烟会引起其成分的变化,并且已经证明它们会导致抗菌素耐药性的增加。目的:比较非吸烟者、烟草使用者和电子烟使用者口腔微生物群抗菌素耐药性的表型特征。方法:采用观察性、描述性、横断面和比较研究。研究人员将非吸烟者、传统烟草吸烟者和使用烟草调味电子烟汁的电子烟(EC)吸烟者分为三组。获得口腔样本,孵育,并在琼脂板中播种。通过革兰氏染色、氧化酶、吲哚和生化试验板分离和鉴定细菌。药敏试验采用MicroScan autoSCAN-4系统和Kirby-Bauer试验。结果:在每组中分离的细菌种群中观察到差异,但不吸烟者显示出最多的病原体。在不吸烟组中,最常见的细菌是严重葡萄球菌,吸烟组中最丰富的细菌是严重葡萄球菌和阴沟肠杆菌,而在电子烟组中,最常见的细菌是表皮葡萄球菌和严重葡萄球菌。结论:各组均出现多药耐药。然而,EC电子烟显示出最高比例的抗微生物药物耐药性,这引起了一个重大关注。
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引用次数: 0
Can exercise be used as a protective agent against disease severity in COVID-19 and as treatment during subsequent rehabilitation? 运动可以作为COVID-19疾病严重程度的保护剂和随后康复期间的治疗方法吗?
Felix León-Avila, Galit Wohlmuth-Cohen, Ana Cristina Suárez-Espinosa, Alejandra De la Cruz-Romano, Jimena Figueroa-Valero
In a matter of months, COVID-19 has spread worldwide, and it has affected not only human lives but also the socioeconomic structure. Disease severity increases with the presence of other factors such as age, diabetes, and hypertension. Exercise has been shown to control blood pressure and blood sugar level; it enhances the immune system and age-related physiological changes. Given its ability to control all of these factors, exercise can be used as a protective agent against disease severity in COVID-19 and as treatment during subsequent rehabilitation.
在短短几个月的时间里,COVID-19在全球蔓延,它不仅影响了人类的生活,也影响了社会经济结构。疾病严重程度随着年龄、糖尿病和高血压等其他因素的存在而增加。运动已被证明可以控制血压和血糖水平;它可以增强免疫系统和与年龄相关的生理变化。鉴于运动能够控制所有这些因素,它可以作为COVID-19疾病严重程度的保护剂,并在随后的康复期间作为治疗手段。
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引用次数: 0
期刊
Proceedings of Scientific Research Universidad Anáhuac. Multidisciplinary Journal of Healthcare
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