Pub Date : 2018-06-28DOI: 10.1128/genomeA.00528-18
Travis G Wentz, Kuan Yao, Kristin M Schill, N Rukma Reddy, Guy E Skinner, Travis R Morrissey, Yun Wang, Tim Muruvanda, Gowri Manickam, Christine A Pillai, Nagarajan Thirunavukkarasu, Maria Hoffmann, Thomas S Hammack, Eric W Brown, Marc W Allard, Shashi K Sharma
Clostridium botulinum is a strictly anaerobic, Gram-positive, spore-forming bacterium that produces botulinum neurotoxin, a potent and deadly proteinaceous exotoxin. Clostridium botulinum strain CFSAN064329 (62A) produces an A1 serotype/subtype botulinum neurotoxin and is frequently utilized in food challenge and detection studies. We report here the closed genome sequence of Clostridium botulinum strain CFSAN064329 (62A).
{"title":"Closed Genome Sequence of Clostridium botulinum Strain CFSAN064329 (62A).","authors":"Travis G Wentz, Kuan Yao, Kristin M Schill, N Rukma Reddy, Guy E Skinner, Travis R Morrissey, Yun Wang, Tim Muruvanda, Gowri Manickam, Christine A Pillai, Nagarajan Thirunavukkarasu, Maria Hoffmann, Thomas S Hammack, Eric W Brown, Marc W Allard, Shashi K Sharma","doi":"10.1128/genomeA.00528-18","DOIUrl":"https://doi.org/10.1128/genomeA.00528-18","url":null,"abstract":"<p><p><i>Clostridium botulinum</i> is a strictly anaerobic, Gram-positive, spore-forming bacterium that produces botulinum neurotoxin, a potent and deadly proteinaceous exotoxin. <i>Clostridium botulinum</i> strain CFSAN064329 (62A) produces an A1 serotype/subtype botulinum neurotoxin and is frequently utilized in food challenge and detection studies. We report here the closed genome sequence of <i>Clostridium botulinum</i> strain CFSAN064329 (62A).</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00528-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-28DOI: 10.1128/genomeA.00547-18
Matthias Ziegler, Hyein Jang, Gopal Gopinath, Jule Anna Horlbog, Roger Stephan, Claudia Guldimann
Ready-to-eat (RTE) raw foods harbor the risk of transmitting Listeria monocytogenes from the environment to the consumer. We isolated three strains from a facility producing RTE salad. These strains were used to perform challenge tests on different RTE salad products. Here, we present the shotgun genome sequences of all three of these strains.
{"title":"Whole-Genome Shotgun Sequencing of Three Listeria monocytogenes Strains Isolated from a Ready-to-Eat Salad-Producing Facility in Switzerland.","authors":"Matthias Ziegler, Hyein Jang, Gopal Gopinath, Jule Anna Horlbog, Roger Stephan, Claudia Guldimann","doi":"10.1128/genomeA.00547-18","DOIUrl":"10.1128/genomeA.00547-18","url":null,"abstract":"<p><p>Ready-to-eat (RTE) raw foods harbor the risk of transmitting <i>Listeria monocytogenes</i> from the environment to the consumer. We isolated three strains from a facility producing RTE salad. These strains were used to perform challenge tests on different RTE salad products. Here, we present the shotgun genome sequences of all three of these strains.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025945/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-28DOI: 10.1128/genomeA.00621-18
Jayanthi Gangiredla, Tammy J Barnaba, Mark K Mammel, David W Lacher, Christopher A Elkins, Keith A Lampel, Chris A Whitehouse, Carmen Tartera
Here, we present the genome sequences of 56 isolates of 10 species of the genus Lactobacillus that are considered beneficial components of the gut microbiota. The isolates examined were found in commercially available dietary supplements in the U.S. market.
{"title":"Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements.","authors":"Jayanthi Gangiredla, Tammy J Barnaba, Mark K Mammel, David W Lacher, Christopher A Elkins, Keith A Lampel, Chris A Whitehouse, Carmen Tartera","doi":"10.1128/genomeA.00621-18","DOIUrl":"https://doi.org/10.1128/genomeA.00621-18","url":null,"abstract":"<p><p>Here, we present the genome sequences of 56 isolates of 10 species of the genus <i>Lactobacillus</i> that are considered beneficial components of the gut microbiota. The isolates examined were found in commercially available dietary supplements in the U.S. market.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00621-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-28DOI: 10.1128/genomeA.00623-18
Helen Morcrette, Marina S Morgan, Audrey Farbos, Paul O'Neill, Karen Moore, Richard W Titball, David J Studholme
Here, we present the genome sequence of Staphylococcus aureus Ex1, isolated in 2015 from a patient with spinal osteomyelitis at the Royal Devon and Exeter Hospital in the United Kingdom. The availability of the Ex1 genome sequence provides a resource for studying the basis for spinal infection and horizontal gene transfer in S. aureus.
{"title":"Genome Sequence of Staphylococcus aureus Ex1, Isolated from a Patient with Spinal Osteomyelitis.","authors":"Helen Morcrette, Marina S Morgan, Audrey Farbos, Paul O'Neill, Karen Moore, Richard W Titball, David J Studholme","doi":"10.1128/genomeA.00623-18","DOIUrl":"https://doi.org/10.1128/genomeA.00623-18","url":null,"abstract":"<p><p>Here, we present the genome sequence of <i>Staphylococcus aureus</i> Ex1, isolated in 2015 from a patient with spinal osteomyelitis at the Royal Devon and Exeter Hospital in the United Kingdom. The availability of the Ex1 genome sequence provides a resource for studying the basis for spinal infection and horizontal gene transfer in <i>S. aureus</i>.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00623-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-28DOI: 10.1128/genomeA.00586-18
Ana Rita Costa, Stan J J Brouns, Franklin L Nobrega
Bacteriophages and their proteins have potential applications in biotechnology for the detection and control of bacterial diseases. Here, we describe the sequencing and genome annotations of two strictly virulent Escherichia coli bacteriophages that may be explored for biocontrol strategies and to expand the understanding of phage-host interactions.
{"title":"Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages.","authors":"Ana Rita Costa, Stan J J Brouns, Franklin L Nobrega","doi":"10.1128/genomeA.00586-18","DOIUrl":"10.1128/genomeA.00586-18","url":null,"abstract":"<p><p>Bacteriophages and their proteins have potential applications in biotechnology for the detection and control of bacterial diseases. Here, we describe the sequencing and genome annotations of two strictly virulent <i>Escherichia coli</i> bacteriophages that may be explored for biocontrol strategies and to expand the understanding of phage-host interactions.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025944/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Edwardsiella piscicida strains JF1307 and JF1411 were isolated from cultured olive flounder that were diagnosed as being infected with edwardsiellosis. The draft genome sequences of the two isolates comprise 3,882,000 bp and 3,827,424 bp with G+C contents of 59.5% and 59.6%, respectively.
{"title":"Draft Genome Sequences of Two Edwardsiella piscicida Strains, JF1307 and JF1411, Isolated from Diseased Olive Flounder (Paralichthys olivaceus) Cultured in Japan.","authors":"Hidehiro Sugiura, Shinya Monno, Hazuki Yamashita, Yusuke Kato, Masayuki Imajoh","doi":"10.1128/genomeA.00600-18","DOIUrl":"https://doi.org/10.1128/genomeA.00600-18","url":null,"abstract":"<p><p><i>Edwardsiella piscicida</i> strains JF1307 and JF1411 were isolated from cultured olive flounder that were diagnosed as being infected with edwardsiellosis. The draft genome sequences of the two isolates comprise 3,882,000 bp and 3,827,424 bp with G+C contents of 59.5% and 59.6%, respectively.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00600-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267380","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report here the 3.6-Mb draft genome of Bacillus altitudinis Lc5, a potential plant growth promoter and an active antagonistic endophyte of black rice. This genome study will provide better insights into the strain's mechanisms for plant growth promotion and biocontrol, thus facilitating its application in organic agriculture.
{"title":"Draft Genome Sequence of Bacillus altitudinis Lc5, a Biocontrol and Plant Growth-Promoting Endophyte Strain Isolated from Indigenous Black Rice of Manipur.","authors":"Momota Potshangbam, Dinabandhu Sahoo, Preveen Verma, Sandhya Verma, Mohan Chandra Kalita, Sarangthem Indira Devi","doi":"10.1128/genomeA.00601-18","DOIUrl":"https://doi.org/10.1128/genomeA.00601-18","url":null,"abstract":"<p><p>We report here the 3.6-Mb draft genome of <i>Bacillus altitudinis</i> Lc5, a potential plant growth promoter and an active antagonistic endophyte of black rice. This genome study will provide better insights into the strain's mechanisms for plant growth promotion and biocontrol, thus facilitating its application in organic agriculture.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00601-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-28DOI: 10.1128/genomeA.00455-18
Rita C Sem Ouilibona, Huguette D Tchetgna Simo, Ulrich Vickos, Nicolas Berthet, Emmanuel Nakouné
We report here the complete genome sequence of a Sindbis virus (SINV) strain, ArB7761, isolated in 1977 in the Central African Republic. This strain, closely related to the Babanki virus, belongs to the SINV genotype I clade. However, it differs from the Egyptian prototype strain AR339 by several indels in the nsP3 gene.
{"title":"Full-Length Genome Sequence of a Sindbis Virus Strain Isolated from Culex cinereus in 1977 in Bozo, Central African Republic.","authors":"Rita C Sem Ouilibona, Huguette D Tchetgna Simo, Ulrich Vickos, Nicolas Berthet, Emmanuel Nakouné","doi":"10.1128/genomeA.00455-18","DOIUrl":"https://doi.org/10.1128/genomeA.00455-18","url":null,"abstract":"<p><p>We report here the complete genome sequence of a Sindbis virus (SINV) strain, ArB7761, isolated in 1977 in the Central African Republic. This strain, closely related to the Babanki virus, belongs to the SINV genotype I clade. However, it differs from the Egyptian prototype strain AR339 by several indels in the nsP3 gene.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00455-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-06-28DOI: 10.1128/genomeA.00532-18
Tomasz J Sanko, Astrid S Kraemer, Niklaas Niemann, Arvind K Gupta, Bradley C Flett, Charlotte Mienie, Carlos C Bezuidenhout
Maize bacterial leaf streak disease has spread across maize crops in South Africa and therefore potentially poses a threat to maize production and food security. Until recently, this pathogen was identified as a Xanthomonas campestris pathovar, whereas our South African genomes seem to be more divergent and create their own subclade.
{"title":"Draft Genome Assemblages of 10 Xanthomonas vasicola pv. zeae Strains, Pathogens Causing Leaf Streak Disease of Maize in South Africa.","authors":"Tomasz J Sanko, Astrid S Kraemer, Niklaas Niemann, Arvind K Gupta, Bradley C Flett, Charlotte Mienie, Carlos C Bezuidenhout","doi":"10.1128/genomeA.00532-18","DOIUrl":"https://doi.org/10.1128/genomeA.00532-18","url":null,"abstract":"<p><p>Maize bacterial leaf streak disease has spread across maize crops in South Africa and therefore potentially poses a threat to maize production and food security. Until recently, this pathogen was identified as a <i>Xanthomonas campestris</i> pathovar, whereas our South African genomes seem to be more divergent and create their own subclade.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00532-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
White spot syndrome virus (WSSV) is the most devastating viral disease affecting cultivated shrimp around the world. Currently, there is no reported genetic information on WSSV affecting Penaeus vannamei in Ecuador. Therefore, we determined the genome of a WSSV isolate from shrimp and compared it with the genomes of isolates from other geographical locations.
{"title":"Draft Genome Sequence of a White Spot Syndrome Virus Isolate Obtained in Ecuador.","authors":"Leda Restrepo, Alejandro Reyes, Leandro Bajaña, Irma Betancourt, Bonny Bayot","doi":"10.1128/genomeA.00605-18","DOIUrl":"https://doi.org/10.1128/genomeA.00605-18","url":null,"abstract":"<p><p>White spot syndrome virus (WSSV) is the most devastating viral disease affecting cultivated shrimp around the world. Currently, there is no reported genetic information on WSSV affecting <i>Penaeus vannamei</i> in Ecuador. Therefore, we determined the genome of a WSSV isolate from shrimp and compared it with the genomes of isolates from other geographical locations.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00605-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}