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Prime editing: therapeutic advances and mechanistic insights. 主要编辑:治疗进展和机制见解。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-28 DOI: 10.1038/s41434-024-00499-1
Joss B Murray, Patrick T Harrison, Janine Scholefield

We are often confronted with a simple question, "which gene editing technique is the best?"; the simple answer is "there isn't one". In 2021, a year after prime editing first made its mark, we evaluated the landscape of this potentially transformative advance in genome engineering towards getting treatments to the clinic [1]. Nearly 20% of the papers we cited were still in pre-print at the time which serves to indicate how early-stage the knowledge base was at that time. Now, three years later, we take a look at the landscape and ask what has been learnt to ensure this tech is broadly accessible, highlighting some key advances, especially those that push this towards the clinic. A big part of the appeal of prime editing is its ability to precisely edit DNA without double stranded breaks, and to install any of the 12 possible single-nucleotide conversion events as well as small insertions and/or deletions, or essentially any combination thereof. Over the last few decades, other transformative and Nobel prize-winning technologies that rely on Watson-Crick base-pairing such as PCR, site-directed mutagenesis, RNA interference, and one might say, "classic" CRISPR, were swiftly adopted across labs around the world because of the speed with which mechanistic rules governing their efficiency were determined. Whilst this perspective focuses on the context of gene therapy applications of prime editing, we also further look at the recent studies which have increased our understanding of the mechanism of PEs and simultaneously improved the efficiency and diversity of the PE toolbox.

我们经常会遇到一个简单的问题,“哪种基因编辑技术是最好的?”简单的回答是“没有”。2021年,也就是初始编辑首次取得成功的一年后,我们评估了基因组工程在将治疗方法推向临床方面的潜在变革性进展的前景。我们引用的近20%的论文当时仍处于预印本阶段,这表明当时的知识库处于多么早期的阶段。现在,三年过去了,我们回顾了这一现状,并询问了我们从中学到了什么,以确保这项技术的广泛应用,并强调了一些关键的进步,特别是那些将这项技术推向临床的进展。引体编辑的一大吸引力在于它能够在没有双链断裂的情况下精确编辑DNA,并能够安装12种可能的单核苷酸转换事件中的任何一种,以及小的插入和/或缺失,或者本质上是它们的任何组合。在过去的几十年里,其他依靠沃森-克里克碱基配对的变革性技术和获得诺贝尔奖的技术,如聚合酶链反应(PCR)、定点诱变(site-directed mutagenesis)、RNA干扰(RNA interference),以及人们可能会说的“经典”CRISPR,都被世界各地的实验室迅速采用,因为控制它们效率的机制规则被确定的速度很快。虽然这一观点侧重于引体编辑基因治疗应用的背景,但我们也进一步研究了最近的研究,这些研究增加了我们对PEs机制的理解,同时提高了PE工具箱的效率和多样性。
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引用次数: 0
Gene-based therapy for the treatment of spinal muscular atrophy types 1 and 2 : a systematic review and meta-analysis. 治疗脊髓性肌萎缩症 1 型和 2 型的基因疗法:系统综述和荟萃分析。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-27 DOI: 10.1038/s41434-024-00503-8
Bunchai Chongmelaxme, Varalee Yodsurang, Ponlawat Vichayachaipat, Thanate Srimatimanon, Oranee Sanmaneechai

Despite numerous studies identifying the advantages of therapies for spinal muscular atrophy (SMA), healthcare professionals encounter obstacles in determining the most effective treatment. This study aimed to investigate the effects of gene-based therapy for SMA. A systematic search was conducted from inception to May 2024 across databases, and all studies assessing the effects of gene-based therapy on patients with SMA types 1 and 2 were included. The outcomes measured were survival, the need for ventilatory support, improvements in motor function, and the occurrence of adverse drug reactions. Meta-analyses were performed using a random-effects model. A total of 57 studies (n = 3418) were included, and the meta-analyses revealed that onasemnogene abeparvovec showed the highest survival rate (95% [95% CI: 88, 100]), followed by risdiplam (86% [95% CI: 76, 94]) and nusinersen (60% [95% CI: 50, 70]). The number of patients needing ventilatory support was reduced after treatment with onasemnogene abeparvovec (risk ratio = 0·10 [95% CI: 0·02, 0·53]). Onasemnogene abeparvovec and risdiplam had similar proportions of patients with improvements in the Children's Hospital of Philadelphia Infant Test of Neuromuscular Disorders score of ≥4 points (92% [95% CI: 62, 100] vs 90% [95% CI: 77, 97]). In contrast, nusinersen had the smallest improvement (74% [95% CI: 66, 81]). The most frequently observed adverse drug reactions were headaches, vomiting, and gastrointestinal disorders. Gene-based therapy benefits patient survival and improves motor function. Onasemnogene abeparvovec and risdiplam appear highly effective, whereas nusinersen exhibits moderate effectiveness.

尽管有大量研究证实了脊髓性肌萎缩症(SMA)疗法的优势,但医护人员在确定最有效的治疗方法时仍会遇到障碍。本研究旨在调查基于基因的疗法对 SMA 的治疗效果。从开始到2024年5月,我们在各数据库中进行了系统性检索,纳入了所有评估基因疗法对1型和2型SMA患者影响的研究。研究结果包括存活率、呼吸支持需求、运动功能改善情况以及药物不良反应发生率。元分析采用随机效应模型进行。荟萃分析显示,onasemnogene abeparvovec的存活率最高(95% [95% CI:88, 100]),其次是risdiplam(86% [95% CI:76, 94])和nusinersen(60% [95% CI:50, 70])。使用onasemnogene abeparvovec治疗后,需要呼吸机支持的患者人数有所减少(风险比=0-10 [95% CI:0-02,0-53])。费城儿童医院婴儿神经肌肉障碍测试评分≥4分的患者比例与onasemnogene abeparvovec和risdiplam相似(92% [95% CI: 62, 100] vs 90% [95% CI: 77, 97])。相比之下,纽西奈森的改善幅度最小(74% [95% CI:66, 81])。最常见的药物不良反应是头痛、呕吐和胃肠功能紊乱。基于基因的疗法有利于患者存活并改善运动功能。Onasemnogene abeparvovec 和 risdiplam 显得非常有效,而 nusinersen 则表现出中等疗效。
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引用次数: 0
PCRX-201, a novel IL-1Ra gene therapy treatment approach for low back pain resulting from intervertebral disc degeneration. PCRX-201 是一种新型 IL-1Ra 基因疗法,用于治疗椎间盘退变引起的腰背痛。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-21 DOI: 10.1038/s41434-024-00504-7
Joseph W Snuggs, Rebecca K Senter, Joshua P Whitt, J Derek Jackson, Christine L Le Maitre

Low back pain is the leading cause of global disability with intervertebral disc (IVD) degeneration a major cause. However, no current treatments target the underlying pathophysiological causes. PCRX-201 presents a novel gene therapy approach that addresses this issue. PCRX-201 codes for interleukin-1 receptor antagonist, the signalling inhibitor of the pro-inflammatory cytokine interleukin-1, which orchestrates the catabolic degeneration of the IVD. Here, the ability of PCRX-201 to transduce human nucleus pulposus cells to increase IL-1Ra production was assessed together with effects on catabolic pathways. When transduced with PCRX-201, the production and release of IL-1Ra was increased in degenerate human nucleus pulposus cells and tissue. Whereas, the production of downstream proteins, including IL-1β, IL-6, MMP3, ADAMTS4 and VEGF were decreased in both cells and tissue, indicating a reduction in IL-1-induced catabolic signalling. Here, a novel gene therapy vector, PCRX-201, was shown to transduce degenerate NP cells and tissue, increasing the production of IL-1Ra. The increased IL-1Ra resulted in decreased production of catabolic cytokines, enzymes and angiogenic factors, whilst also increasing aggrecan expression. This demonstrates PCRX-201 enables the inhibition of IL-1-driven IVD degeneration. The ability of PCRX-201 to elicit anti-catabolic responses is promising and warrants further development to determine the efficacy of this exciting, novel gene therapy.

腰背痛是导致全球残疾的主要原因,而椎间盘(IVD)退化是主要原因之一。然而,目前还没有针对潜在病理生理原因的治疗方法。PCRX-201 提出了一种新型基因治疗方法来解决这一问题。PCRX-201 编码为白细胞介素-1 受体拮抗剂,它是促炎细胞因子白细胞介素-1 的信号抑制剂,而白细胞介素-1 会协调 IVD 的分解变性。本文评估了 PCRX-201 转导人髓核细胞以增加 IL-1Ra 生成的能力以及对分解代谢途径的影响。转导 PCRX-201 后,变性人髓核细胞和组织中 IL-1Ra 的产生和释放均有所增加。而在细胞和组织中,下游蛋白(包括IL-1β、IL-6、MMP3、ADAMTS4和VEGF)的产生均有所减少,这表明IL-1诱导的分解代谢信号有所减少。研究表明,新型基因治疗载体 PCRX-201 可转导变性 NP 细胞和组织,增加 IL-1Ra 的产生。IL-1Ra 的增加导致分解代谢细胞因子、酶和血管生成因子的产生减少,同时也增加了凝集素的表达。这表明 PCRX-201 能够抑制 IL-1 驱动的 IVD 退化。PCRX-201 引发抗分解代谢反应的能力令人充满希望,值得进一步开发,以确定这种令人兴奋的新型基因疗法的疗效。
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引用次数: 0
Bridging gene therapy and next-generation vaccine technologies. 连接基因治疗和新一代疫苗技术。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-18 DOI: 10.1038/s41434-024-00502-9
Kristie Bloom, Abdullah Ely, Mohube Betty Maepa, Patrick Arbuthnot
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引用次数: 0
Retraction Note: Gene therapy with a promoter targeting both rods and cones rescues retinal degeneration caused by AIPL1 mutations. 撤稿说明:使用同时针对视杆细胞和视锥的启动子进行基因治疗,可挽救由AIPL1突变引起的视网膜变性。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-15 DOI: 10.1038/s41434-024-00505-6
X Sun, B Pawlyk, X Xu, X Liu, O V Bulgakov, M Adamian, M A Sandberg, S C Khani, M -H Tan, A J Smith, R R Ali, T Li
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引用次数: 0
Non-replicative herpes simplex virus genomic and amplicon vectors for gene therapy - an update. 用于基因治疗的非复制性单纯疱疹病毒基因组和扩增子载体--最新进展。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-12 DOI: 10.1038/s41434-024-00500-x
Matthieu Le Hars, Charles Joussain, Teddy Jégu, Alberto L Epstein

Two major types of defective vectors have been derived from herpes simplex virus type 1 (HSV-1), non-replicative genomic vectors (nrHSV-1), and amplicon vectors. This review recapitulates the main features of both vector types and summarizes recent improvements in our understanding of virus/vector biology, particularly with regard to the critical role played by the overpowering of antiviral cellular defenses and the epigenetic control of viral gene expression. Over the past years, significant breakthroughs in vector design, genetic engineering, and HSV-1 biology have accelerated the development of nrHSV-1 vectors. The low immunogenicity and enhanced safety profiles allowed the successful translation of these vectors into several clinical trials, with some being approved by the FDA. Regarding amplicons, despite their advantage in carrying very large or multiple transgenes, and their potential to avoid genome dilution in dividing cells, the absence of production procedures capable of generating large amounts of helper-free amplicons at reasonable cost with GMP compliance, still limits the translation of these outstanding vectors to clinical trials.

从 1 型单纯疱疹病毒(HSV-1)中衍生出了两大类缺陷载体,即非复制基因组载体(nrHSV-1)和扩增子载体。这篇综述回顾了这两种载体的主要特征,并总结了我们最近对病毒/载体生物学认识的提高,特别是在克服抗病毒细胞防御功能和病毒基因表达的表观遗传控制方面发挥的关键作用。过去几年中,载体设计、基因工程和 HSV-1 生物学方面的重大突破加速了 nrHSV-1 载体的开发。低免疫原性和更高的安全性使这些载体成功进入了多项临床试验,其中一些已获得美国食品及药物管理局的批准。至于扩增子,尽管它们在携带超大或多重转基因方面具有优势,而且有可能避免基因组在分裂细胞中的稀释,但由于缺乏能以合理成本生产大量无辅助基因扩增子并符合 GMP 标准的生产程序,这些优秀的载体仍无法应用于临床试验。
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引用次数: 0
The disparate burden of infectious diseases. 传染病造成的不同负担。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 DOI: 10.1038/s41434-024-00501-w
Kristie Bloom
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引用次数: 0
Expression and distribution of rAAV9 intrathecally administered in juvenile to adolescent mice. rAAV9在幼年至青春期小鼠体内的表达和分布。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-05 DOI: 10.1038/s41434-024-00498-2
Irvin T Garza, Meghan M Eller, Sydni K Holmes, Morgan K Schackmuth, Rachel M Bailey

Intrathecal (IT) lumbar puncture delivery of recombinant adeno-associated virus serotype 9 (rAAV9) is a gene therapy approach being explored in preclinical studies and ongoing gene therapy clinical trials for neurological diseases. Few studies address IT rAAV9 vector distribution, tropism, and expression with respect to age of administration. Therefore, we IT delivered a rAAV9/GFP vector in mice at ages ranging from early postnatal development through adulthood (P10-P90). Tissues were assessed for transgene expression, cell tropism, and vector distribution. In the CNS, transduction was highest when delivered at post-natal day 10 (P10) and there was an age-dependent decline in transduction. We found higher transduction of astrocytes relative to neurons when rAAV9 was administered at younger ages and a switch to higher neuronal transduction with delivery at older timepoints. Biodistribution analysis of peripheral tissues showed that when delivered at P10, rAAV9 has the greatest distribution to the heart. Conversely, at P90 rAAV9 liver distribution was highest. As rAAV9 IT-delivered gene therapies continue to emerge for neurological diseases, careful consideration of the age of delivery should be taken in relation to the expected distribution and cell expression in animal models, and how this may translate to human studies.

腰椎穿刺鞘内注射重组腺相关病毒血清型 9(rAAV9)是临床前研究和正在进行的神经系统疾病基因治疗临床试验中探索的一种基因治疗方法。很少有研究涉及 IT rAAV9 载体的分布、滋养和表达与给药年龄的关系。因此,我们在小鼠从出生后早期发育到成年期(P10-P90)的不同年龄段对rAAV9/GFP载体进行了IT给药。我们对小鼠组织的转基因表达、细胞滋养和载体分布进行了评估。在中枢神经系统中,出生后第 10 天(P10)转导率最高,转导率随年龄的增长而下降。我们发现,相对于神经元,rAAV9 在较小的年龄段给药时,星形胶质细胞的转导率较高,而在较大的时间点给药时,神经元的转导率转为较高。外周组织的生物分布分析表明,在 P10 给药时,rAAV9 在心脏的分布最广。相反,在 P90 时,rAAV9 在肝脏的分布最多。随着治疗神经系统疾病的 rAAV9 IT 给药基因疗法不断涌现,应仔细考虑给药年龄与动物模型的预期分布和细胞表达的关系,以及如何将其转化为人体研究。
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引用次数: 0
Characterization of anti-AAV2 neutralizing antibody levels in sheep prior to and following intravitreal AAV2.7m8 injection 玻璃体内注射 AAV2.7m8 之前和之后绵羊体内抗 AAV2 中和抗体水平的特征。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-29 DOI: 10.1038/s41434-024-00495-5
Maya Ross, Kareen Sade, Alexey Obolensky, Edward Averbukh, Melissa Desrosiers, Alexander Rosov, Hay Dvir, Elisha Gootwine, Eyal Banin, Deniz Dalkara, Ron Ofri
Gene augmentation therapy is a promising treatment for incurable, blinding inherited retinal diseases, and intravitreal delivery is being studied as a safe alternative to subretinal injections. Adeno-Associated Viruses (AAV) are commonly-used vectors for ocular gene augmentation therapy. Naturally occurring pre-operative exposure and infection with AAV could result in presence of neutralizing antibodies (NAB’s) in patients’ serum, and may affect the safety and efficacy of treatment. Our aim was to characterize the humoral response against AAV pre- and post-intravitreal delivery of AAV2.7m8 vectors in a naturally-occurring sheep model of CNGA3 achromatopsia. Serial serum neutralization assays were performed to screen sheep for pre-exiting anti-AAV2 NAB’s, and to assess the effect of intravitreal AAV2.7m8 injection on post-operative NAB titers and intraocular inflammation in sheep. The effect of viral dose and transgene type were also assessed. Serological screening revealed pre-operative seropositivity in 21.4% of animals, with age being a risk factor for the presence of anti-AAV2 NAB’s. NAB titers increased following intravitreal AAV administration in the majority of sheep. There was no significant difference in the degree of post-operative serum neutralization between pre-operatively seronegative sheep and those with pre-existing antibodies. However, only sheep with pre-existing antibodies presented with signs of post-operative inflammation. We conclude that pre-existing anti-AAV2 NAB’s do not affect the level of post-operative NAB titers; however, they increase the risk of post-operative ocular inflammation. Our results could have implications for the management of AAV-mediated ocular gene therapies, a technology being increasingly studied and used in patients.
基因扩增疗法是治疗无法治愈的致盲性遗传性视网膜疾病的一种很有前景的方法,目前正在研究将玻璃体内给药作为视网膜下注射的一种安全替代方法。腺相关病毒(AAV)是眼部基因增强疗法常用的载体。术前自然发生的 AAV 暴露和感染可能导致患者血清中出现中和抗体(NAB),并可能影响治疗的安全性和有效性。我们的目的是在自然发生的 CNGA3 失色素性眼病绵羊模型中,分析 AAV2.7m8 载体静脉注射前后对 AAV 的体液反应。通过连续血清中和试验筛查绵羊体内预先存在的抗 AAV2 NAB,并评估玻璃体内注射 AAV2.7m8 对绵羊术后 NAB 滴度和眼内炎症的影响。此外,还评估了病毒剂量和转基因类型的影响。血清学筛查显示,21.4%的动物术前血清阳性,年龄是出现抗AAV2 NAB的风险因素。大多数绵羊在玻璃体内注射 AAV 后,NAB 滴度都会升高。术前血清阴性的绵羊和已有抗体的绵羊在术后血清中和程度上没有明显差异。然而,只有存在抗体的绵羊才会出现术后炎症症状。我们的结论是,术前存在的抗 AAV2 NAB 不会影响术后 NAB 滴度水平,但会增加术后眼部发炎的风险。我们的研究结果可能会对 AAV 介导的眼部基因疗法的管理产生影响,这项技术正在被越来越多的患者研究和使用。
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引用次数: 0
Electroporation-mediated novel albumin-fused Flt3L DNA delivery promotes cDC1-associated anticancer immunity. 电穿孔介导的新型白蛋白融合 Flt3L DNA 递送可促进 cDC1 相关的抗癌免疫。
IF 4.6 3区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-29 DOI: 10.1038/s41434-024-00497-3
Ming-Hung Hu, Darrell Fan, Hsin-Fang Tu, Ya-Chea Tsai, Liangmei He, Zhicheng Zhou, Michelle Cheng, Deyin Xing, Suyang Wang, Alexis Wu, T C Wu, Chien-Fu Hung

Dendritic cells (DCs) constitute a distinct type of immune cell found within tumors, serving a central role in mediating tumor antigen-specific immunity against cancer cells. Frequently, DC functions are dysregulated by the immunosuppressive signals present within the tumor microenvironment (TME). Consequently, DC manipulation holds great potential to enhance the cytotoxic T cell response against cancer diseases. One strategy involves administering Fms-like tyrosine kinase receptor 3 ligand (Flt3L), a vitally important cytokine for DC development. In this current study, the electroporation-mediated delivery of a novel albumin-fused Flt3L DNA (alb-Flt3L DNA) demonstrated the ability to induce an anti-tumor immune response. This albumin fusion construct possesses more persistent bioactivity in targeted organs. Furthermore, TC-1-bearing-C57BL/6 mice receiving alb-Flt3L DNA treatment presented better tumor control and superior survival. Cellular analysis revealed that alb-Flt3L DNA administration promoted robust DC and cDC1 expansion. In addition, increased levels of IFN-γ-secreting CD8+ lymphocytes were found in correlation to greater cDC1 population. Moreover, the toxicity of alb-Flt3L administration is limited. Collectively, our data showcases a novel DC-based immunotherapy using electroporation to administer alb-Flt3L DNA.

树突状细胞(DC)是肿瘤内一种独特的免疫细胞,在介导针对癌细胞的肿瘤抗原特异性免疫中发挥着核心作用。肿瘤微环境(TME)中存在的免疫抑制信号经常会导致树突状细胞功能失调。因此,操纵直流电具有增强细胞毒性 T 细胞对癌症疾病反应的巨大潜力。其中一种策略是施用Fms样酪氨酸激酶受体3配体(Flt3L),这是一种对DC发育至关重要的细胞因子。在目前的研究中,电穿孔介导的新型白蛋白融合 Flt3L DNA(alb-Flt3L DNA)递送证明了诱导抗肿瘤免疫反应的能力。这种白蛋白融合构建体在靶器官中具有更持久的生物活性。此外,接受 alb-Flt3L DNA 治疗的 TC-1-C57BL/6 小鼠的肿瘤控制率更高,存活率更高。细胞分析表明,alb-Flt3L DNA 能促进 DC 和 cDC1 的扩增。此外,分泌 IFN-γ 的 CD8+ 淋巴细胞水平的增加与 cDC1 数量的增加相关。此外,施用 alb-Flt3L 的毒性有限。总之,我们的数据展示了一种新型的基于直流电的免疫疗法,它利用电穿孔技术给药 alb-Flt3L DNA。
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引用次数: 0
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Gene Therapy
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