František Vavrek, Jindřich Gasior, Jakub Šebera, Michal Valášek, Gábor Mészáros, Magdaléna Hromadová
Functional molecular electronics require molecular design that provides integrity and stability. In this work, we explored two types of single molecule devices differing in anchoring to the conducting leads. Single molecule conductance was measured by STM break junction method and the molecular conductor was composed of the redox active anthraquinone center (switching element) containing either 4-pyridyl or p-phenylene thioacetate anchoring groups. The experimental results were supported by quantum chemical charge transport calculations. Molecular junctions containing 4-pyridyl anchors displayed two stable configurations with conductance values of 4.9 nS and 20 pS, respectively. Molecules anchored via p-phenylene thioacetate groups led to one main junction configuration with conductance of 0.1 nS. Junctions employing 4-pyridyl anchoring groups had higher junction formation probability, which in combination with lower conductance makes them better candidates for switching purposes.
{"title":"Single Molecule Conductance of Anthraquinone-Based Molecular Wire: Effect of the Anchoring Group","authors":"František Vavrek, Jindřich Gasior, Jakub Šebera, Michal Valášek, Gábor Mészáros, Magdaléna Hromadová","doi":"10.1002/hlca.202400155","DOIUrl":"https://doi.org/10.1002/hlca.202400155","url":null,"abstract":"<p>Functional molecular electronics require molecular design that provides integrity and stability. In this work, we explored two types of single molecule devices differing in anchoring to the conducting leads. Single molecule conductance was measured by STM break junction method and the molecular conductor was composed of the redox active anthraquinone center (switching element) containing either 4-pyridyl or <i>p</i>-phenylene thioacetate anchoring groups. The experimental results were supported by quantum chemical charge transport calculations. Molecular junctions containing 4-pyridyl anchors displayed two stable configurations with conductance values of 4.9 nS and 20 pS, respectively. Molecules anchored via <i>p</i>-phenylene thioacetate groups led to one main junction configuration with conductance of 0.1 nS. Junctions employing 4-pyridyl anchoring groups had higher junction formation probability, which in combination with lower conductance makes them better candidates for switching purposes.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 2","pages":""},"PeriodicalIF":1.5,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/hlca.202400155","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143424136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tobias Schnitzer, Joseph F. Woods, Nils Trapp, Helma Wennemers
Oligoprolines adopt the well-defined polyproline II (PPII) helical conformation, even at a short chain length of six residues. These rigid peptides are versatile molecular rulers and scaffolds, yet there has been great difficulty in obtaining single crystals for X-ray crystal structure analysis to probe their conformation in the solid state. Here, we report a crystal structure of an oligoproline hexamer bearing an N-terminal terephthalic acid moiety. Comparison with that of a previously obtained crystal structure of a closely related hexaproline revealed influence of the terminal functional groups and the solvent on the crystal packing.
{"title":"A Crystal Structure of an Oligoproline Hexamer with a Zig-zag Arrangement","authors":"Tobias Schnitzer, Joseph F. Woods, Nils Trapp, Helma Wennemers","doi":"10.1002/hlca.202400147","DOIUrl":"https://doi.org/10.1002/hlca.202400147","url":null,"abstract":"<p>Oligoprolines adopt the well-defined polyproline II (PPII) helical conformation, even at a short chain length of six residues. These rigid peptides are versatile molecular rulers and scaffolds, yet there has been great difficulty in obtaining single crystals for X-ray crystal structure analysis to probe their conformation in the solid state. Here, we report a crystal structure of an oligoproline hexamer bearing an N-terminal terephthalic acid moiety. Comparison with that of a previously obtained crystal structure of a closely related hexaproline revealed influence of the terminal functional groups and the solvent on the crystal packing.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 2","pages":""},"PeriodicalIF":1.5,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/hlca.202400147","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143424296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Annika Matt, Alessandro Prescimone, Daniel Häussinger
Pseudocontact shift NMR spectroscopy is a powerful tool in integrative structural biology. Conformationally rigid, enantiopure chelators with extremely high affinity to lanthanoids play a crucial role for this technique. In this context, we have synthesized enantiopure complexes of Y, Eu, Dy, Tm and Lu of (S)-H2bbppn (H2bbppn: N,N’-bis(2-hydroxybenzyl)-N,N’-bis(2-methylpyridyl)propylene-1,2-diamine) and investigated their NMR properties. Strongly paramagnetic 1H-NMR spectra showing extremely large chemical shift ranges were obtained for Dy (2280 ppm), Tm (380 ppm) and Eu (68 ppm) and the anisotropy of the magnetic susceptibility was determined in all cases. The axial components of the susceptibility tensors for the (S)-bbppn complexes were determined as 225, −32 and 6×10−32 m3 for Dy, Tm and Eu. For (S)-[Y(bbppn)Cl], a single crystal structure was obtained providing atom coordinates for the isostructural series of lanthanoid compounds. It was demonstrated that in all cases rigid, enantiopure lanthanoid complexes were formed, providing an attractive new scaffold for potential conjugatable lanthanoid chelating tags.
{"title":"NMR Investigation of Lanthanoid (III) Complexes of bbppn (H2bbppn: N,N’-bis(2-hydroxybenzyl)-N,N’-bis(2-methylpyridyl)propylene-1,2-diamine)","authors":"Annika Matt, Alessandro Prescimone, Daniel Häussinger","doi":"10.1002/hlca.202400177","DOIUrl":"https://doi.org/10.1002/hlca.202400177","url":null,"abstract":"<p>Pseudocontact shift NMR spectroscopy is a powerful tool in integrative structural biology. Conformationally rigid, enantiopure chelators with extremely high affinity to lanthanoids play a crucial role for this technique. In this context, we have synthesized enantiopure complexes of Y, Eu, Dy, Tm and Lu of (<i>S</i>)<i>-</i>H<sub>2</sub>bbppn (H<sub>2</sub>bbppn: <i>N,N’</i>-bis(2-hydroxybenzyl)-<i>N,N’</i>-bis(2-methylpyridyl)propylene-1,2-diamine) and investigated their NMR properties. Strongly paramagnetic <sup>1</sup>H-NMR spectra showing extremely large chemical shift ranges were obtained for Dy (2280 ppm), Tm (380 ppm) and Eu (68 ppm) and the anisotropy of the magnetic susceptibility was determined in all cases. The axial components of the susceptibility tensors for the (<i>S</i>)-bbppn complexes were determined as 225, −32 and 6×10<sup>−32</sup> m<sup>3</sup> for Dy, Tm and Eu. For (<i>S</i>)-[Y(bbppn)Cl], a single crystal structure was obtained providing atom coordinates for the isostructural series of lanthanoid compounds. It was demonstrated that in all cases rigid, enantiopure lanthanoid complexes were formed, providing an attractive new scaffold for potential conjugatable lanthanoid chelating tags.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 4","pages":""},"PeriodicalIF":1.5,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143840650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hansjoerg Lehmann, Thomas Ruppen, Susanne Oswald, Ning Ye, Xiangguang Tian, Xingxian Gu, Chunhui Dai, Robin A. Fairhurst
The development of a safe, efficient and scalable continuous-flow-chemistry protocol for the O-difluoromethylation of two 3-hydroxypyridine building blocks is described. This example highlights that continuous flow chemistry has become firmly established within Novartis Biomedical Research, and when implemented appropriately can enable the continuous supply of material from the first realization of a potentially interesting intermediate within a discovery project all the way through to clinical evaluation.
{"title":"Development of a Safe and Efficient Continuous Flow Method for the Synthesis of 3-Difluoromethoxypyridine Derivatives","authors":"Hansjoerg Lehmann, Thomas Ruppen, Susanne Oswald, Ning Ye, Xiangguang Tian, Xingxian Gu, Chunhui Dai, Robin A. Fairhurst","doi":"10.1002/hlca.202400182","DOIUrl":"https://doi.org/10.1002/hlca.202400182","url":null,"abstract":"<p>The development of a safe, efficient and scalable continuous-flow-chemistry protocol for the O-difluoromethylation of two 3-hydroxypyridine building blocks is described. This example highlights that continuous flow chemistry has become firmly established within Novartis Biomedical Research, and when implemented appropriately can enable the continuous supply of material from the first realization of a potentially interesting intermediate within a discovery project all the way through to clinical evaluation.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 2","pages":""},"PeriodicalIF":1.5,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143423554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}