Olga Rybakova, Josef Reisinger, Philipp Rieser, Philipp Geyer, Stefan Gerlich, Markus Arndt, Amal Kumar, Daniel Häussinger, Marcel Mayor, Valentin Köhler
Optical control of molecular beams is intriguing as it promises to become a new tool for mass spectrometry and quantum interferometry, where a single or two photons deterministically remove a tailored tag from a larger molecular structure, e. g., a polypeptide. This cleavage process can change the charge state of the macromolecule, provide reporting signals for both fragments by mass spectrometry and it can selectively remove the fragments from a molecular beam by the momentum recoil generated in the dissociation process. Here, we explore a series of porphyrin derivatives as candidates for photocleavage in the gas phase. They share a large, conjugated core which promises a high absorption cross section for visible light. We present the individualization and beam formation of candidate molecules and study their photo-dissociation under tunable, visible radiation. We observe a significant wavelength shift and broadening in the photocleavage cross section for molecules in the gas phase compared to those in solution and we find that a single photon can suffice to trigger the cleavage process.
{"title":"Photocleavable Porphyrin Derivatives for Quantum Optics","authors":"Olga Rybakova, Josef Reisinger, Philipp Rieser, Philipp Geyer, Stefan Gerlich, Markus Arndt, Amal Kumar, Daniel Häussinger, Marcel Mayor, Valentin Köhler","doi":"10.1002/hlca.202500022","DOIUrl":"https://doi.org/10.1002/hlca.202500022","url":null,"abstract":"<p>Optical control of molecular beams is intriguing as it promises to become a new tool for mass spectrometry and quantum interferometry, where a single or two photons deterministically remove a tailored tag from a larger molecular structure, e. g., a polypeptide. This cleavage process can change the charge state of the macromolecule, provide reporting signals for both fragments by mass spectrometry and it can selectively remove the fragments from a molecular beam by the momentum recoil generated in the dissociation process. Here, we explore a series of porphyrin derivatives as candidates for photocleavage in the gas phase. They share a large, conjugated core which promises a high absorption cross section for visible light. We present the individualization and beam formation of candidate molecules and study their photo-dissociation under tunable, visible radiation. We observe a significant wavelength shift and broadening in the photocleavage cross section for molecules in the gas phase compared to those in solution and we find that a single photon can suffice to trigger the cleavage process.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 5","pages":""},"PeriodicalIF":1.5,"publicationDate":"2025-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/hlca.202500022","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144074716","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sendaner Adelieti, Si-Qi Wu, Xian-Hao Wu, Rong Guo, Jian-Shan Chen, Zhi-Fang Diao, Zi-Yi Miao, Zhen-Hong Han, Ye-Yan Qin, Yuan-Gen Yao
The carbonylation of methyl nitrite (MN) to synthesize dimethyl carbonate (DMC) is a promising route, but the lack of efficient and stable catalysts remains a major challenge for large-scale applications. In this study, by adjusting the alkalinity of the initial gel, NaY zeolites with tunable acidity were synthesized, and the amount of Lewis acid sites was optimized. Appropriate amounts of Lewis acid sites facilitated the interaction between NaY zeolites and Pd species, which was beneficial for stabilizing the oxidation state of Pd and promoting CO adsorption and activation, thereby contributing to the formation of the key intermediate *COOCH3. The catalyst PdCu/NaY-1 (alkalinity in the initial gel Na2O=9) exhibited significant improvement in catalytic performance for the synthesis of DMC, with the WTYDMC of 1604 g kgcat−1⋅h−1, the conversion of CO to DMC (CCO) of 88.7 %, and the DMC selectivity based on CO (SDMC/CO) up to 100 %.
亚硝酸盐甲酯(MN)羰基化合成碳酸二甲酯(DMC)是一条很有前途的途径,但缺乏高效稳定的催化剂仍然是大规模应用的主要挑战。本研究通过调节初始凝胶的碱度,合成了酸度可调的NaY分子筛,并优化了Lewis酸位的数量。适量的Lewis酸位点促进了NaY分子筛与Pd的相互作用,有利于稳定Pd的氧化态,促进CO的吸附和活化,从而促进关键中间体*COOCH3的形成。催化剂PdCu/NaY-1(初始凝胶中碱度Na2O=9)对DMC的催化性能有显著改善,WTYDMC为1604 g kgcat−1⋅h−1,CO对DMC (CCO)的转化率为88.7%,基于CO (SDMC/CO)的DMC选择性高达100%。
{"title":"Effect of Gel Alkalinity on the Catalytic Properties of PdCu/NaY Zeolites for Methyl Nitrite Carbonylation to Dimethyl Carbonate","authors":"Sendaner Adelieti, Si-Qi Wu, Xian-Hao Wu, Rong Guo, Jian-Shan Chen, Zhi-Fang Diao, Zi-Yi Miao, Zhen-Hong Han, Ye-Yan Qin, Yuan-Gen Yao","doi":"10.1002/hlca.202500015","DOIUrl":"https://doi.org/10.1002/hlca.202500015","url":null,"abstract":"<p>The carbonylation of methyl nitrite (MN) to synthesize dimethyl carbonate (DMC) is a promising route, but the lack of efficient and stable catalysts remains a major challenge for large-scale applications. In this study, by adjusting the alkalinity of the initial gel, NaY zeolites with tunable acidity were synthesized, and the amount of Lewis acid sites was optimized. Appropriate amounts of Lewis acid sites facilitated the interaction between NaY zeolites and Pd species, which was beneficial for stabilizing the oxidation state of Pd and promoting CO adsorption and activation, thereby contributing to the formation of the key intermediate *COOCH<sub>3</sub>. The catalyst PdCu/NaY-1 (alkalinity in the initial gel Na<sub>2</sub>O=9) exhibited significant improvement in catalytic performance for the synthesis of DMC, with the WTY<sub>DMC</sub> of 1604 g kg<sub>cat</sub><sup>−1</sup>⋅h<sup>−1</sup>, the conversion of CO to DMC (C<sub>CO</sub>) of 88.7 %, and the DMC selectivity based on CO (S<sub>DMC/CO</sub>) up to 100 %.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 6","pages":""},"PeriodicalIF":1.5,"publicationDate":"2025-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144292946","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Vladimir Gorbachev, Lara van Tetering, Jonathan Martens, Jos Oomens, Giel Berden, Alexandra Tsybizova, Peter Chen
Protonation and tautomerization significantly impact the conformational landscape and non-covalent interactions in bis(oxazoline) (BOX) ligands, which are crucial for their applications in catalysis. These interactions influence properties such as binding affinity and catalytic efficiency. While tautomerization has been reported for neutral BOX ligands, its role in protonated forms remains less understood. Here we report the structural and spectroscopic characterization of (S,S−Ph-BOX)H+ and its tautomerization-resistant derivative (S,S−Ph-diMeBOX)H+. We show through IRMPD spectroscopy and TIMS experiments, combined with DFT calculations that (S,S−Ph-BOX)H+ is present in its tautomeric form, while a broader conformational landscape is observed for (S,S−Ph-diMeBOX)H+, in which an N−H⋅⋅⋅N proton-shared conformer is identified. These findings provide a deeper understanding of the relationship between tautomerization and non-covalent interactions in protonated BOX ligands, offering insights for the design of catalytic systems.
{"title":"Understanding the Structure of Protonated Box Ligands: Insights from Spectroscopy and Computational Studies","authors":"Vladimir Gorbachev, Lara van Tetering, Jonathan Martens, Jos Oomens, Giel Berden, Alexandra Tsybizova, Peter Chen","doi":"10.1002/hlca.202400205","DOIUrl":"https://doi.org/10.1002/hlca.202400205","url":null,"abstract":"<p>Protonation and tautomerization significantly impact the conformational landscape and non-covalent interactions in bis(oxazoline) (BOX) ligands, which are crucial for their applications in catalysis. These interactions influence properties such as binding affinity and catalytic efficiency. While tautomerization has been reported for neutral BOX ligands, its role in protonated forms remains less understood. Here we report the structural and spectroscopic characterization of (S,S−Ph-BOX)H<sup>+</sup> and its tautomerization-resistant derivative (S,S−Ph-diMeBOX)H<sup>+</sup>. We show through IRMPD spectroscopy and TIMS experiments, combined with DFT calculations that (S,S−Ph-BOX)H<sup>+</sup> is present in its tautomeric form, while a broader conformational landscape is observed for (S,S−Ph-diMeBOX)H<sup>+</sup>, in which an N−H⋅⋅⋅N proton-shared conformer is identified. These findings provide a deeper understanding of the relationship between tautomerization and non-covalent interactions in protonated BOX ligands, offering insights for the design of catalytic systems.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 5","pages":""},"PeriodicalIF":1.5,"publicationDate":"2025-03-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144074773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anthony A. Birkbeck, Christian Chapuis, Michel Schalk
The rich chemistry of East Indian Sandalwood oil has fascinated chemists for over a century. Whilst the synthesis on industrial scale of the principal odour vector (−)-(Z)-β-Santalol 2, has resisted all attempts to date, many synthetic fragrant sandalwood ingredients have been discovered and manufactured on industrial scale. This precious wood is still listed as endangered and appears on the CITES red list, despite an increased number of plantations being developed. This review will focus on the interesting chemistry of Santalum album (Linn.) essential oil and the subsequent efforts by researchers to find a viable substitute for this highly appreciated oil both by investigating novel structures and using biotech approaches. The emphasis will be on the approaches to these highly appreciated odorants made from renewable resources that are currently manufactured on multi-MT scale. Lesser emphasis will be placed on close structural analogues that have not been commercially successful.
{"title":"Approaches to Commercial Sandalwood Odorants from Renewable Sources","authors":"Anthony A. Birkbeck, Christian Chapuis, Michel Schalk","doi":"10.1002/hlca.202500010","DOIUrl":"https://doi.org/10.1002/hlca.202500010","url":null,"abstract":"<p>The rich chemistry of East Indian Sandalwood oil has fascinated chemists for over a century. Whilst the synthesis on industrial scale of the principal odour vector (−)-(<i>Z</i>)-β-Santalol <b>2</b>, has resisted all attempts to date, many synthetic fragrant sandalwood ingredients have been discovered and manufactured on industrial scale. This precious wood is still listed as endangered and appears on the CITES red list, despite an increased number of plantations being developed. This review will focus on the interesting chemistry of <i>Santalum album</i> (<span>Linn.</span>) essential oil and the subsequent efforts by researchers to find a viable substitute for this highly appreciated oil both by investigating novel structures and using biotech approaches. The emphasis will be on the approaches to these highly appreciated odorants made from renewable resources that are currently manufactured on multi-MT scale. Lesser emphasis will be placed on close structural analogues that have not been commercially successful.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 5","pages":""},"PeriodicalIF":1.5,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144074662","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kim Greis, Linus F. Busse, Lukas R. Benzenberg, Ri Wu, Renato Zenobi
Native mass spectrometry ionizes biomolecules from aqueous buffered solutions using electrospray ionization. Collisions and lasers are often used to study the structures of such native biomolecular ions. While structural changes upon collisions have been studied in more detail, interactions with photons mostly comprise fragmentation. It remains unclear to what degree biomolecular ions undergo unfolding until cleavage. Here, gas-phase Förster resonance energy transfer (FRET) is used to study fluorescence lifetimes of a 32-residue α-helical peptide to monitor peptide unfolding. Increases in lifetime of up to 1.2 ns per charge are observed for different charge states, showing that a low charge is necessary for peptides to retain a compact structure. Increases in lifetime by up to 0.5 ns are observed upon collisional and laser-based activation and show that the peptide is partially unfolding upon activation. The results contribute to understanding the unfolding dynamics of biomolecules upon activation in mass spectrometry experiments.
{"title":"How Native Are Peptides After Activation by Collisions or Photons? A Gas-Phase FRET Study","authors":"Kim Greis, Linus F. Busse, Lukas R. Benzenberg, Ri Wu, Renato Zenobi","doi":"10.1002/hlca.202500043","DOIUrl":"https://doi.org/10.1002/hlca.202500043","url":null,"abstract":"<p>Native mass spectrometry ionizes biomolecules from aqueous buffered solutions using electrospray ionization. Collisions and lasers are often used to study the structures of such native biomolecular ions. While structural changes upon collisions have been studied in more detail, interactions with photons mostly comprise fragmentation. It remains unclear to what degree biomolecular ions undergo unfolding until cleavage. Here, gas-phase Förster resonance energy transfer (FRET) is used to study fluorescence lifetimes of a 32-residue α-helical peptide to monitor peptide unfolding. Increases in lifetime of up to 1.2 ns per charge are observed for different charge states, showing that a low charge is necessary for peptides to retain a compact structure. Increases in lifetime by up to 0.5 ns are observed upon collisional and laser-based activation and show that the peptide is partially unfolding upon activation. The results contribute to understanding the unfolding dynamics of biomolecules upon activation in mass spectrometry experiments.</p>","PeriodicalId":12842,"journal":{"name":"Helvetica Chimica Acta","volume":"108 5","pages":""},"PeriodicalIF":1.5,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144074661","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}