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METTL3 mediates m6A methylation of LCN2 through IGF2BP3 to promote ferroptosis in chronic obstructive pulmonary disease. METTL3通过IGF2BP3介导LCN2的m6A甲基化,促进慢性阻塞性肺疾病的铁下沉。
IF 2.5 3区 生物学 Pub Date : 2025-12-26 DOI: 10.1186/s41065-025-00628-9
Fang Chen, Dan Liu, Zuoquan Zhu, Da Chen
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引用次数: 0
LINC01980 promotes the malignant progression of lung squamous carcinoma by targeting miR-204-3p. LINC01980通过靶向miR-204-3p促进肺鳞癌的恶性进展。
IF 2.5 3区 生物学 Pub Date : 2025-12-13 DOI: 10.1186/s41065-025-00617-y
Man Zhang, Weiwei Sun, Zhansheng Jiang, Zhanyu Pan, Zhuchen Yan, Lujun Zhao
{"title":"LINC01980 promotes the malignant progression of lung squamous carcinoma by targeting miR-204-3p.","authors":"Man Zhang, Weiwei Sun, Zhansheng Jiang, Zhanyu Pan, Zhuchen Yan, Lujun Zhao","doi":"10.1186/s41065-025-00617-y","DOIUrl":"10.1186/s41065-025-00617-y","url":null,"abstract":"","PeriodicalId":12862,"journal":{"name":"Hereditas","volume":" ","pages":"13"},"PeriodicalIF":2.5,"publicationDate":"2025-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12822309/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145751574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CD248, targeted by veratramine and neobavaisoflavone, mediates pathological changes of renal tubular epithelial cells induced by high glucose. 以veratramine和新巴伐瓦异黄酮为靶点的CD248介导高糖诱导的肾小管上皮细胞病理改变。
IF 2.5 3区 生物学 Pub Date : 2025-12-12 DOI: 10.1186/s41065-025-00624-z
Mei Lin, Nan Hu, Zhen Wang, Ping Li, Dan Song, Xinzhou Zhang

Background: Epithelial-mesenchymal transition (EMT) of tubular epithelial cells are one of the major pathological changes of diabetic nephropathy (DN). Cluster of differentiation 248 (CD248) has been reported to be associated with fibrosis after kidney injury. The aim of this study was to investigate the mechanism of CD248 in DN and its targeted compounds.

Materials and methods: Virtual screening, molecular docking and Cellular thermal shift assays were used to explore potential small molecule compounds targeting CD248. In vitro DN model was established by treating human proximal renal tubular epithelial cell line HK-2 with high glucose (HG), and db/db mice were used as the animal model. siRNA transfection was used to knockdown CD248 in HK-2 cells, and HK-2 cells and the animals were treated with veratramine (VER) or neobavaisoflavone (NBIF). qPCR was used to detect the mRNA expression of CD248, tumor necrosis factor-α (TNF-α), interleukin (IL)-6 (IL-6), and IL-1β. Western blot was used to assess protein expression level of CD248, EMT-associated proteins, fibrosis markers, and TGF-β1/Smads pathway-associated proteins. CCK-8 assay and flow cytometry were used to detect cell viability and apoptosis, respectively. Histopathological and various biochemical indicators were used to assess renal injury in animals.

Results: CD248 was significantly up-regulated in HG-induced HK-2 cells. CD248 knockdown inhibited HG-induced cell proliferation inhibition, apoptosis and inflammatory response. HG stimulation significantly reduced the protein expression level of E-cadherin in HK-2 cells, and increased the expression levels of vimentin, α-smooth muscle actin (α-SMA), collagen I, collagen IV, fibronectin, TGF-β1, p-Smad2, p-Smad3, and Smad4, while CD248 knockdown reversed these effects. In addition, VER and neobavaisoflavone were found to bind with CD248, and they inhibited HG-induced apoptosis, inflammation, EMT and extracellular matrix synthesis in HK-2 cells, and ameliorate the renal injury of db/db mice. VER and NBIF also inhibited HG-induced activation of TGF-β1/Smads axis.

Conclusion: CD248 participates in HG-induced EMT of renal tubular epithelial cells and renal fibrosis by regulating TGF-β1/Smads pathway, and VER and NBIF are two potential natural drugs which targets it to ameliorate DN.

背景:小管上皮细胞上皮间质转化(EMT)是糖尿病肾病(DN)的主要病理改变之一。据报道,分化簇248 (CD248)与肾损伤后的纤维化有关。本研究旨在探讨CD248在DN及其靶向化合物中的作用机制。材料和方法:利用虚拟筛选、分子对接和细胞热移等方法探索靶向CD248的潜在小分子化合物。采用高糖(HG)处理人肾近端小管上皮细胞系HK-2,建立体外DN模型,以db/db小鼠为动物模型。转染siRNA敲低HK-2细胞中的CD248,并用veratramine (VER)或neobavaisoflavone (NBIF)处理HK-2细胞和动物。采用qPCR检测CD248、肿瘤坏死因子-α (TNF-α)、白细胞介素(IL)-6 (IL-6)、IL-1β mRNA的表达。Western blot检测CD248、emt相关蛋白、纤维化标志物、TGF-β1/Smads通路相关蛋白的表达水平。CCK-8法检测细胞活力,流式细胞术检测细胞凋亡。采用组织病理学和各种生化指标评价动物肾损伤。结果:CD248在hg诱导的HK-2细胞中显著上调。CD248敲低可抑制hg诱导的细胞增殖抑制、细胞凋亡和炎症反应。HG刺激可显著降低HK-2细胞中E-cadherin的蛋白表达水平,提高vimentin、α-平滑肌肌动蛋白(α-SMA)、I型胶原、IV型胶原、纤维连接蛋白、TGF-β1、p-Smad2、p-Smad3、Smad4的表达水平,而敲除CD248可逆转这些作用。此外,发现VER和新巴伐瓦异黄酮与CD248结合,抑制hg诱导的HK-2细胞凋亡、炎症、EMT和细胞外基质合成,改善db/db小鼠肾损伤。VER和NBIF也能抑制hg诱导的TGF-β1/Smads轴的激活。结论:CD248通过调节TGF-β1/Smads通路参与hg诱导的肾小管上皮细胞EMT和肾纤维化,VER和NBIF是两种可能靶向其改善DN的天然药物。
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引用次数: 0
MiR-143-5p serves as a diagnostic biomarker in patients with sepsis and regulates sepsis-induced inflammation and cardiac dysfunction. MiR-143-5p作为脓毒症患者的诊断生物标志物,调节脓毒症诱导的炎症和心功能障碍。
IF 2.5 3区 生物学 Pub Date : 2025-12-10 DOI: 10.1186/s41065-025-00623-0
Yaqi Wu, Le Gu, Xu Huang

Background & objective: MicroRNAs (miRNAs) offer advantages in stability and therapeutic specificity. This study investigated the diagnostic and therapeutic potential of miR-143-5p in sepsis (SP) and SP-associated cardiac dysfunction (CD). ‌Methods. Quantitative Real-Time polymerase chain reaction (qRT-PCR) quantified serum and cellular miR-143-5p levels. Receiver operator characteristic (ROC) curve evaluated miR-143-5p's diagnostic efficacy. Pearson correlation analysis assessed the association between miR-143-5p and SP. Univariate logistic regression identified CD risk factors, with multivariate logistic analysis including significant variables from univariate analysis. Lipopolysaccharide (LPS)-induced macrophage (THP-1) and cardiomyocyte (AC16) models elucidated miR-143-5p mechanisms in SP, with bioinformatics predicting the potential pathways. ‌Results. MiR-143-5p downregulation demonstrated diagnostic value for SP (AUC: 0.897) and SP-CD (AUC: 0.812). MiR-143-5p expression correlated (P < 0.0001) with white blood cell count (WBC, r = -0.680), C-reactive protein (CRP, r = -0.563), procalcitonin (PCT, r = - 0.693), left ventricular ejection fraction (LVEF, r = 0.640), cardiac troponin I (cTnI, r = -0.599), Acute Physiology And Chronic Health Evaluation II (APACHE II, r = -0.695), and Sequential Organ Failure Assessment (SOFA, P < 0.05) scores. MiR-143-5p served as a risk factor for CD in SP (OR: 0.100). MiR-143-5p overexpression reduced M1 polarization and pro-inflammatory cytokines in LPS-treated THP-1. In AC16 cardiomyocytes, it enhanced viability, suppressed apoptosis, and attenuated inflammation. Bioinformatics analysis indicated miR-143-5p was involved in p53 and MAPK signal pathways regulation. ‌Conclusions. MiR-143-5p downregulation showed diagnostic potential for SP and SP with CD, correlating with disease severity and CD risk. Mechanistically, miR-143-5p overexpression mitigated macrophage and cardiomyocyte injury.

背景与目的:MicroRNAs (miRNAs)在稳定性和治疗特异性方面具有优势。本研究探讨了miR-143-5p在脓毒症(SP)和SP相关性心功能障碍(CD)中的诊断和治疗潜力。‌方法。定量实时聚合酶链反应(qRT-PCR)定量血清和细胞miR-143-5p水平。ROC曲线评价miR-143-5p的诊断效果。Pearson相关分析评估了miR-143-5p与SP之间的相关性。单因素logistic回归确定了CD的危险因素,多因素logistic分析包括单因素分析的显著变量。脂多糖(LPS)诱导的巨噬细胞(THP-1)和心肌细胞(AC16)模型阐明了miR-143-5p在SP中的机制,并用生物信息学预测了潜在的途径。‌结果。MiR-143-5p下调对SP (AUC: 0.897)和SP- cd (AUC: 0.812)具有诊断价值。MiR-143-5p的表达与P
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引用次数: 0
The diagnostic value and mechanism of miR-127-3p in type 2 diabetes and complications of diabetic nephropathy. miR-127-3p在2型糖尿病及糖尿病肾病并发症中的诊断价值及机制
IF 2.5 3区 生物学 Pub Date : 2025-12-06 DOI: 10.1186/s41065-025-00618-x
Lili Du, Hong Xia, Lingbo Lv, Xin Zhang, Guoxia Luo, Meini Cen

Background: Diabetic kidney disease (DKD) is a serious microvascular complication of type 2 diabetes mellitus (T2DM). miR-127-3p is dysregulated in T2DM, but the specific molecular mechanism remains unclear. We aim to probe the diagnostic value of miR-127-3p and its molecular mechanism in T2DM and DKD.

Methods: This study comprised 218 individuals, including 78 patients with T2DM, 72 patients with DKD and 68 healthy controls. All participants underwent fasting peripheral blood collection. In vitro, we simulated a hyperglycemic environment by treating human mesangial cells (HMC) with high-concentration glucose (HG). Subsequently, RT-qPCR was used to detect the levels of miR-127-3p in serum and HMC. Cell viability and inflammatory cytokine (TNF-α, IL-1β and IL-6) levels were assessed using the CCK-8 assay and ELISA, respectively. The dual-luciferase reporter assay validated the target relationship between miR-127-3p and ACO2.

Results: By comparing baseline clinical characteristics, we identified significant differences among the three groups in high density lipoprotein cholesterol (HDL-C), triglycerides (TG), fasting blood glucose (FBG), glycated hemoglobin A1c (HbA1c), blood urea nitrogen (BUN), estimated glomerular filtration rate (eGFR) and albuminuria. Additionally, miR-127-3p was elevated in T2DM and DKD patients. It could distinguish healthy individuals from T2DM or T2DM from DKD. In HG-induced HMC, miR-127-3p inhibitor elevated the cell viability and the levels of SOD while suppressing the levels of MDA. These effects were abolished by ACO2 silencing. Furthermore, downregulated miR-127-3p reduced the levels of TNF-α, IL-1β and IL-6. sh-ACO2 alleviated the inhibitory effects of miR-127-3p.

Conclusions: Upregulated miR-127-3p was involved in the progression of T2DM and DKD. In HG-induced HMC, down-regulated miR-127-3p improved cell viability and suppressed oxidative stress and inflammatory responses by negatively regulating ACO2.

背景:糖尿病肾病(DKD)是2型糖尿病(T2DM)的一种严重微血管并发症。miR-127-3p在T2DM中表达异常,但具体的分子机制尚不清楚。我们旨在探讨miR-127-3p在T2DM和DKD中的诊断价值及其分子机制。方法:本研究纳入218例个体,其中T2DM患者78例,DKD患者72例,健康对照68例。所有参与者都进行了空腹外周血采集。在体外,我们通过用高浓度葡萄糖(HG)处理人系膜细胞(HMC)来模拟高血糖环境。随后,采用RT-qPCR检测血清和HMC中miR-127-3p的水平。分别采用CCK-8法和ELISA法检测细胞活力和炎性细胞因子(TNF-α、IL-1β和IL-6)水平。双荧光素酶报告基因实验验证了miR-127-3p与ACO2之间的靶标关系。结果:通过比较基线临床特征,我们发现三组患者在高密度脂蛋白胆固醇(HDL-C)、甘油三酯(TG)、空腹血糖(FBG)、糖化血红蛋白A1c (HbA1c)、血尿素氮(BUN)、肾小球滤过率(eGFR)和蛋白尿方面存在显著差异。此外,miR-127-3p在T2DM和DKD患者中升高。它可以区分健康人与T2DM或T2DM与DKD。在hg诱导的HMC中,miR-127-3p抑制剂提高细胞活力和SOD水平,同时抑制MDA水平。ACO2沉默消除了这些影响。此外,miR-127-3p下调可降低TNF-α、IL-1β和IL-6的水平。sh-ACO2可减轻miR-127-3p的抑制作用。结论:miR-127-3p上调参与T2DM和DKD的进展。在hg诱导的HMC中,下调miR-127-3p通过负调控ACO2提高细胞活力,抑制氧化应激和炎症反应。
{"title":"The diagnostic value and mechanism of miR-127-3p in type 2 diabetes and complications of diabetic nephropathy.","authors":"Lili Du, Hong Xia, Lingbo Lv, Xin Zhang, Guoxia Luo, Meini Cen","doi":"10.1186/s41065-025-00618-x","DOIUrl":"10.1186/s41065-025-00618-x","url":null,"abstract":"<p><strong>Background: </strong>Diabetic kidney disease (DKD) is a serious microvascular complication of type 2 diabetes mellitus (T2DM). miR-127-3p is dysregulated in T2DM, but the specific molecular mechanism remains unclear. We aim to probe the diagnostic value of miR-127-3p and its molecular mechanism in T2DM and DKD.</p><p><strong>Methods: </strong>This study comprised 218 individuals, including 78 patients with T2DM, 72 patients with DKD and 68 healthy controls. All participants underwent fasting peripheral blood collection. In vitro, we simulated a hyperglycemic environment by treating human mesangial cells (HMC) with high-concentration glucose (HG). Subsequently, RT-qPCR was used to detect the levels of miR-127-3p in serum and HMC. Cell viability and inflammatory cytokine (TNF-α, IL-1β and IL-6) levels were assessed using the CCK-8 assay and ELISA, respectively. The dual-luciferase reporter assay validated the target relationship between miR-127-3p and ACO2.</p><p><strong>Results: </strong>By comparing baseline clinical characteristics, we identified significant differences among the three groups in high density lipoprotein cholesterol (HDL-C), triglycerides (TG), fasting blood glucose (FBG), glycated hemoglobin A1c (HbA1c), blood urea nitrogen (BUN), estimated glomerular filtration rate (eGFR) and albuminuria. Additionally, miR-127-3p was elevated in T2DM and DKD patients. It could distinguish healthy individuals from T2DM or T2DM from DKD. In HG-induced HMC, miR-127-3p inhibitor elevated the cell viability and the levels of SOD while suppressing the levels of MDA. These effects were abolished by ACO2 silencing. Furthermore, downregulated miR-127-3p reduced the levels of TNF-α, IL-1β and IL-6. sh-ACO2 alleviated the inhibitory effects of miR-127-3p.</p><p><strong>Conclusions: </strong>Upregulated miR-127-3p was involved in the progression of T2DM and DKD. In HG-induced HMC, down-regulated miR-127-3p improved cell viability and suppressed oxidative stress and inflammatory responses by negatively regulating ACO2.</p>","PeriodicalId":12862,"journal":{"name":"Hereditas","volume":" ","pages":"10"},"PeriodicalIF":2.5,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12798043/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145687224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multimethodological and multiscale investigation of the therapeutic mechanism of Qian Ji Sheng Xue Pian in treating primary immune thrombocytopenia. 钱济生血片治疗原发性免疫性血小板减少症的多方法学、多尺度研究。
IF 2.5 3区 生物学 Pub Date : 2025-12-06 DOI: 10.1186/s41065-025-00620-3
Yujue Wang, Chengyan Liu, Xiaoqi Sun, Weijie Zhang, Hailin Chen, Wenwei Zhu

Background: For more than 30 years, Qian Ji Sheng Xue Pian (QJSXP) has been used clinically to treat primary immune thrombocytopenia (ITP) with good documented efficacy. However, nothing is known about its underlying mechanisms, effective components, and possible targets. To employ several methodologies to initially investigate the possible targets and therapeutic mechanisms of QJSXP in the treatment of ITP.

Methods: Liquid chromatography-mass spectrometry (LC-MS) identified the principal chemical elements of QJSXP and assessed its probable active components based on ADME characteristics. The research incorporated multidimensional databases to pinpoint probable targets for the active components. Key pathogenic targets linked to ITP were aggregated from several illness databases, and the STRING and Metascape tools were utilized to examine protein interaction activities and related biological processes. Mendelian randomization (MR) was then utilized to determine beneficial targets for the therapy of ITP. The potential targets, including disease targets and MR-positive targets, were found at the intersection, while risk genes were excluded by heterogeneity, pleiotropy, and Steiger analysis to ascertain the core targets. Molecular docking and molecular dynamics simulations were conducted utilizing Schrodinger and Gromacs software to assess the binding affinity of compound-core targets. The toxicological effects of active molecules targeting critical sites were concurrently anticipated using several toxicity databases.

Results: A total of 67 active components and 352 potential targets were discovered in QJSXP, of which 77 were associated with ITP disease targets. Through MR analysis, a total of 12 core genes were identified. Binding scores below - 4.25 kcal/mol constituted 82.0%; docking scores below - 5 kcal/mol represented 60.1%, with an average binding energy of -5.44 kcal/mol. The majority of targets demonstrated strong binding affinity with the components. Toxicity prediction initially highlighted potential hazards, including hepatotoxicity and nephrotoxicity, establishing a foundation for future clinical surveillance.

Conclusion: This study has preliminarily identified the active constituents, associated pathways, and possible targets of QJSXP in the treatment of ITP, offering insights for additional experimental validation of QJSXP's mechanism of action in ITP.

背景:30多年来,钱记生血片(QJSXP)一直用于临床治疗原发性免疫性血小板减少症(ITP),并有良好的疗效记录。然而,对其潜在的机制、有效成分和可能的靶点一无所知。采用多种方法初步探讨QJSXP治疗ITP的可能靶点和治疗机制。方法:采用液相色谱-质谱法(LC-MS)对QJSXP的主要化学元素进行鉴定,并根据其ADME特性对其可能的有效成分进行评价。该研究结合了多维数据库,以确定活性成分的可能目标。从多个疾病数据库中汇总与ITP相关的关键致病靶点,并利用STRING和metscape工具检测蛋白质相互作用活性和相关生物学过程。然后利用孟德尔随机化(MR)来确定ITP治疗的有益靶点。在交叉点发现潜在靶点,包括疾病靶点和mr阳性靶点,而通过异质性、多效性和Steiger分析排除危险基因,以确定核心靶点。利用Schrodinger和Gromacs软件进行分子对接和分子动力学模拟,评估化合物核心靶点的结合亲和力。利用几个毒性数据库同时预测了靶向关键位点的活性分子的毒理学效应。结果:QJSXP共发现67种有效成分和352种潜在靶点,其中77种与ITP疾病靶点相关。通过MR分析,共鉴定出12个核心基因。结合分数低于- 4.25 kcal/mol的占82.0%;对接分数低于-5 kcal/mol的占60.1%,平均结合能为-5.44 kcal/mol。大多数靶点与这些成分表现出较强的结合亲和力。毒性预测最初强调了潜在的危害,包括肝毒性和肾毒性,为未来的临床监测奠定了基础。结论:本研究初步确定了芪芩sxp治疗ITP的有效成分、相关通路及可能的作用靶点,为进一步实验验证芪芩sxp治疗ITP的作用机制提供了思路。
{"title":"Multimethodological and multiscale investigation of the therapeutic mechanism of Qian Ji Sheng Xue Pian in treating primary immune thrombocytopenia.","authors":"Yujue Wang, Chengyan Liu, Xiaoqi Sun, Weijie Zhang, Hailin Chen, Wenwei Zhu","doi":"10.1186/s41065-025-00620-3","DOIUrl":"10.1186/s41065-025-00620-3","url":null,"abstract":"<p><strong>Background: </strong>For more than 30 years, Qian Ji Sheng Xue Pian (QJSXP) has been used clinically to treat primary immune thrombocytopenia (ITP) with good documented efficacy. However, nothing is known about its underlying mechanisms, effective components, and possible targets. To employ several methodologies to initially investigate the possible targets and therapeutic mechanisms of QJSXP in the treatment of ITP.</p><p><strong>Methods: </strong>Liquid chromatography-mass spectrometry (LC-MS) identified the principal chemical elements of QJSXP and assessed its probable active components based on ADME characteristics. The research incorporated multidimensional databases to pinpoint probable targets for the active components. Key pathogenic targets linked to ITP were aggregated from several illness databases, and the STRING and Metascape tools were utilized to examine protein interaction activities and related biological processes. Mendelian randomization (MR) was then utilized to determine beneficial targets for the therapy of ITP. The potential targets, including disease targets and MR-positive targets, were found at the intersection, while risk genes were excluded by heterogeneity, pleiotropy, and Steiger analysis to ascertain the core targets. Molecular docking and molecular dynamics simulations were conducted utilizing Schrodinger and Gromacs software to assess the binding affinity of compound-core targets. The toxicological effects of active molecules targeting critical sites were concurrently anticipated using several toxicity databases.</p><p><strong>Results: </strong>A total of 67 active components and 352 potential targets were discovered in QJSXP, of which 77 were associated with ITP disease targets. Through MR analysis, a total of 12 core genes were identified. Binding scores below - 4.25 kcal/mol constituted 82.0%; docking scores below - 5 kcal/mol represented 60.1%, with an average binding energy of -5.44 kcal/mol. The majority of targets demonstrated strong binding affinity with the components. Toxicity prediction initially highlighted potential hazards, including hepatotoxicity and nephrotoxicity, establishing a foundation for future clinical surveillance.</p><p><strong>Conclusion: </strong>This study has preliminarily identified the active constituents, associated pathways, and possible targets of QJSXP in the treatment of ITP, offering insights for additional experimental validation of QJSXP's mechanism of action in ITP.</p>","PeriodicalId":12862,"journal":{"name":"Hereditas","volume":" ","pages":"11"},"PeriodicalIF":2.5,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12797464/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145695719","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Performance of a self-developed panel for biogeographic ancestry inference and dissection of the genetic background of three Tibetan groups.
IF 2.5 3区 生物学 Pub Date : 2025-12-05 DOI: 10.1186/s41065-025-00604-3
Yifeng Lin, Xi Yuan, Xi Wang, Shuanglin Li, Hongbin Yao, Bonan Dong, Bofeng Zhu
{"title":"Performance of a self-developed panel for biogeographic ancestry inference and dissection of the genetic background of three Tibetan groups.","authors":"Yifeng Lin, Xi Yuan, Xi Wang, Shuanglin Li, Hongbin Yao, Bonan Dong, Bofeng Zhu","doi":"10.1186/s41065-025-00604-3","DOIUrl":"10.1186/s41065-025-00604-3","url":null,"abstract":"","PeriodicalId":12862,"journal":{"name":"Hereditas","volume":" ","pages":"9"},"PeriodicalIF":2.5,"publicationDate":"2025-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12797779/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145687239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optical genome mapping of a complex structural rearrangement family line on chromosome 18. 18号染色体上一个复杂结构重排家族系的光学基因组定位。
IF 2.5 3区 生物学 Pub Date : 2025-12-02 DOI: 10.1186/s41065-025-00602-5
Liyi Cai, Yuying Jiang, Na Zhang, Xinying Chen

Background: Complex chromosomal rearrangement (CCR) refers to a structural rearrangement involving at least two chromosomes or a minimum of three breakpoints. CCR may lead to intellectual disability, structural anomalies, infertility, and recurrent miscarriages. Chromosome karyotyping and chromosomal microarray analysis (CMA) are unable to detect complex chromosomal rearrangements. As multiple diagnostic approaches are available in clinical practice for detecting chromosomal structural abnormalities and copy number variations-each with its own advantages and limitations-selecting the appropriate testing method is crucial for effective clinical management. Optical genome mapping (OGM) is an advanced genomic technology that utilizes ultra-long single-molecule analysis to comprehensively detect chromosomal aberrations and structural variants at high resolution.

Material and methods: Amniocentesis was performed for a 36-year-old multipara (advanced maternal age), with subsequent comprehensive fetal genetic analysis including chromosome karyotyping, CMA, and OGM. Family members underwent peripheral blood karyotyping and OGM.

Results: The fetal karyotype derived from amniotic fluid was 46,XN,?ins(18)(q21.2;p11.31p11.2). CMA demonstrated duplications of four segments and a deletion of one segment on chromosome 18. Therefore, OGM was performed on the fetal and family members to further elucidate the chromosomal structure. The fetus has derived CCRs on chromosome 18 of maternal origin. In contrast, both the mother and the second daughter, who carried the identical CCRs, were phenotypically normal.

Conclusion: OGM is of significant importance in the diagnosis and characterization of CCRs. OGM plays a critical role in diagnosing complex chromosomal rearrangements and has proven to be invaluable in clinical utility.

背景:复杂染色体重排(CCR)是指涉及至少两条染色体或至少三个断点的结构重排。CCR可能导致智力残疾、结构异常、不孕症和反复流产。染色体核型和染色体微阵列分析(CMA)无法检测复杂的染色体重排。由于临床实践中有多种诊断方法可用于检测染色体结构异常和拷贝数变异,每种方法都有其优点和局限性,因此选择合适的检测方法对于有效的临床管理至关重要。光学基因组图谱(OGM)是一种先进的基因组技术,利用超长单分子分析技术,以高分辨率全面检测染色体畸变和结构变异。材料和方法:对一位36岁的多胞胎(高龄产妇)进行羊膜穿刺术,随后进行全面的胎儿遗传分析,包括染色体核型、CMA和OGM。对家族成员进行外周血核型和OGM检测。结果:羊水提取的胎儿核型为46、XN、xins (18)(q21.2;p11.31p11.2)。CMA在18号染色体上发现了4个片段的重复和1个片段的缺失。因此,对胎儿和家庭成员进行OGM以进一步阐明染色体结构。胎儿在母体起源的18号染色体上衍生出CCRs。相比之下,携带相同ccr的母亲和二女儿在表型上都是正常的。结论:OGM在CCRs的诊断和表征中具有重要意义。OGM在诊断复杂的染色体重排中起着至关重要的作用,并已被证明在临床应用中是无价的。
{"title":"Optical genome mapping of a complex structural rearrangement family line on chromosome 18.","authors":"Liyi Cai, Yuying Jiang, Na Zhang, Xinying Chen","doi":"10.1186/s41065-025-00602-5","DOIUrl":"10.1186/s41065-025-00602-5","url":null,"abstract":"<p><strong>Background: </strong>Complex chromosomal rearrangement (CCR) refers to a structural rearrangement involving at least two chromosomes or a minimum of three breakpoints. CCR may lead to intellectual disability, structural anomalies, infertility, and recurrent miscarriages. Chromosome karyotyping and chromosomal microarray analysis (CMA) are unable to detect complex chromosomal rearrangements. As multiple diagnostic approaches are available in clinical practice for detecting chromosomal structural abnormalities and copy number variations-each with its own advantages and limitations-selecting the appropriate testing method is crucial for effective clinical management. Optical genome mapping (OGM) is an advanced genomic technology that utilizes ultra-long single-molecule analysis to comprehensively detect chromosomal aberrations and structural variants at high resolution.</p><p><strong>Material and methods: </strong>Amniocentesis was performed for a 36-year-old multipara (advanced maternal age), with subsequent comprehensive fetal genetic analysis including chromosome karyotyping, CMA, and OGM. Family members underwent peripheral blood karyotyping and OGM.</p><p><strong>Results: </strong>The fetal karyotype derived from amniotic fluid was 46,XN,?ins(18)(q21.2;p11.31p11.2). CMA demonstrated duplications of four segments and a deletion of one segment on chromosome 18. Therefore, OGM was performed on the fetal and family members to further elucidate the chromosomal structure. The fetus has derived CCRs on chromosome 18 of maternal origin. In contrast, both the mother and the second daughter, who carried the identical CCRs, were phenotypically normal.</p><p><strong>Conclusion: </strong>OGM is of significant importance in the diagnosis and characterization of CCRs. OGM plays a critical role in diagnosing complex chromosomal rearrangements and has proven to be invaluable in clinical utility.</p>","PeriodicalId":12862,"journal":{"name":"Hereditas","volume":"162 1","pages":"235"},"PeriodicalIF":2.5,"publicationDate":"2025-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12673678/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145661094","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
miR-223-3p predicts prognosis of hepatitis B virus-related acute-on-chronic liver failure and is involved in hepatocyte injury via HSP90B1. miR-223-3p可预测乙型肝炎病毒相关急慢性肝衰竭的预后,并通过HSP90B1参与肝细胞损伤。
IF 2.5 3区 生物学 Pub Date : 2025-11-29 DOI: 10.1186/s41065-025-00610-5
Feiyue Xie, Qiuping Ren, Jun He, Menghang Wu
{"title":"miR-223-3p predicts prognosis of hepatitis B virus-related acute-on-chronic liver failure and is involved in hepatocyte injury via HSP90B1.","authors":"Feiyue Xie, Qiuping Ren, Jun He, Menghang Wu","doi":"10.1186/s41065-025-00610-5","DOIUrl":"10.1186/s41065-025-00610-5","url":null,"abstract":"","PeriodicalId":12862,"journal":{"name":"Hereditas","volume":" ","pages":"6"},"PeriodicalIF":2.5,"publicationDate":"2025-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12771722/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145632592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LncRNA LEF1-AS1 exerts a carcinogenic effect in breast cancer by accelerating proliferation, metastasis, and epithelial-mesenchymal transition. LncRNA LEF1-AS1通过加速乳腺癌的增殖、转移和上皮-间质转化发挥致癌作用。
IF 2.5 3区 生物学 Pub Date : 2025-11-29 DOI: 10.1186/s41065-025-00613-2
Linna Kong, Jiaqi Liu, Huihui Zhang, Jun Chu
{"title":"LncRNA LEF1-AS1 exerts a carcinogenic effect in breast cancer by accelerating proliferation, metastasis, and epithelial-mesenchymal transition.","authors":"Linna Kong, Jiaqi Liu, Huihui Zhang, Jun Chu","doi":"10.1186/s41065-025-00613-2","DOIUrl":"10.1186/s41065-025-00613-2","url":null,"abstract":"","PeriodicalId":12862,"journal":{"name":"Hereditas","volume":" ","pages":"7"},"PeriodicalIF":2.5,"publicationDate":"2025-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12771952/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145632660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Hereditas
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