Ovarian GLI1 fusion tumors are rare mesenchymal neoplasms that closely mimic sex cord-stromal tumors (SCSTs) in both morphology and immunophenotype, frequently leading to misdiagnosis. In this study, we identified five such cases through re-evaluation of SCST-like ovarian tumors. Histologically, three distinct patterns were observed: the spindle pattern, the stellate/microcystic pattern and the epithelioid pattern. Immunophenotypically, all cases showed overlapping features with SCSTs, including CD10 expression and variable positivity for sex cord-stromal markers such as FOXL2, SF1, and Calretinin. Molecular analysis revealed recurrent ACTB::GLI1 fusions in four cases and a novel FUBP1::GLI1 fusion in one. Meta-analysis integrating our cases with ten previously reported ovarian GLI1 fusion tumors showed that these tumors predominantly occur in middle-aged women and present as significantly larger masses than their soft tissue and solid organ counterparts (P < 0.05). Notably, the relapse and metastasis rates of ovarian GLI1 fusion tumors were similar to adult granulosa cell tumors (AGCTs). In contrast, their recurrence rate was significantly higher than that of microcystic stromal tumors (MCSTs) (P < 0.05), indicating a more aggressive clinical course. Transcriptomic analysis revealed no significant correlation between ovarian GLI1 fusion tumors and sclerosing stromal tumors. These findings underscore the necessity of molecular testing for GLI1 rearrangements in SCST-like ovarian tumors to ensure accurate diagnosis and appropriate clinical management.
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