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Mitochondrial plasmid-like DNAs of the B1 family in the genus Oryza: sequence heterogeneity and evolution. 稻属B1家族线粒体质粒样dna:序列异质性和进化。
Pub Date : 1995-12-01 DOI: 10.1266/jjg.70.675
S Miyata, A Kanazawa, N Tsutsumi, Y Sano, A Hirai

Four kinds of circular plasmid-like DNA, designated B1, B2, B3 and B4, have been found in the mitochondria of Oryza sativa L. with an AA genome. Three novel B1-homologous mitochondrial plasmid-like DNAs, designated, M1, M2 and M3, were isolated in the present study from strains with CC and CCDD genomes in the genus Oryza. We cloned and sequenced these DNAs and found that the sequences of these molecules have wide regions of homology. B1, M2 and M3 each lack about 300 bp of a region that is present in M1 and small repeats were found at the sites of deleted sequences. Therefore, we propose the hypothesis that the B1 family differentiated from a common ancient molecule that was similar to M1 via, probably, slipped mispairing during DNA replication at several stages in the evolution in the genus Oryza.

在具有AA基因组的水稻(Oryza sativa L.)线粒体中发现了4种环状质粒样DNA,分别为B1、B2、B3和B4。本研究从稻谷属CC和CCDD基因组菌株中分离到3个新的b1同源线粒体质粒样dna,分别命名为M1、M2和M3。我们对这些dna进行了克隆和测序,发现这些分子的序列具有广泛的同源区域。B1、M2和M3各缺失约300bp的M1中存在的区域,并且在缺失序列的位置发现了小重复。因此,我们提出了一个假设,即B1家族从一个类似于M1的共同古老分子中分化出来,可能是通过在水稻属进化的几个阶段DNA复制过程中的滑错配对。
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引用次数: 6
Regional localization of rat and mouse protein-tyrosine phosphatase PTP alpha/LRP gene (Ptpra) by fluorescence in situ hybridization. 大鼠和小鼠蛋白酪氨酸磷酸酶PTP α /LRP基因(Ptpra)的荧光原位杂交区域定位。
Pub Date : 1995-12-01 DOI: 10.1266/jjg.70.669
M Saadat, K Nakamura, Y Mizuno, K Kikuchi, M C Yoshida

Protein tyrosine phosphatases (PTPases) negatively regulate the effect(s) of protein tyrosine kinases and are implicated in the regulation of a variety of biological events including cell activation, differentiation, and neoplastic transformation. To gain insight into the role(s) of the PTPases, we mapped the gene encoding for the widely expressed receptor-like protein tyrosine phosphatase PTP alpha/LRP (locus symbol Ptpra) to rat chromosome 3q36 and mouse chromosome 2G by fluorescence in situ hybridization method. These results indicate that there is a conserved syntenic group between human 20p13, rat 3q36, and mouse 2G.

蛋白酪氨酸磷酸酶(PTPases)负向调节蛋白酪氨酸激酶的作用,并参与多种生物事件的调节,包括细胞活化、分化和肿瘤转化。为了深入了解PTPases的作用,我们利用荧光原位杂交方法将广泛表达的受体样蛋白酪氨酸磷酸酶PTP α /LRP(位点符号Ptpra)的编码基因定位到大鼠染色体3q36和小鼠染色体2G上。这些结果表明,在人类20p13、大鼠3q36和小鼠2G之间存在一个保守的同源群。
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引用次数: 3
Molecular clock for dating of divergence between animal phyla. 用分子钟测定动物门间分化的年代。
Pub Date : 1995-12-01 DOI: 10.1266/jjg.70.687
N Iwabe, K Kuma, N Nikoh, T Miyata

To estimate approximate times of divergence of animal phyla lacking fossil data, it is important to find a molecule that evolves with an approximately constant rate over a wide evolutionary distance covering the whole animal phyla. For this purpose, the evolutionary rate constancy has been examined for 20 proteins. It was found that four proteins, particularly the aldolase C, involved in the glycolitic pathway, had evolved with rates that are approximately constant not only among different classes of vertebrates, but also between vertebrates and arthropods. The evolutionary rate (= 0.26 x 10(-9)/site/year) of the aldolase C is likely to have remained essentially unchanged even between animals and plants.

为了估计缺乏化石数据的动物门的大致分化时间,重要的是要找到一个分子,在覆盖整个动物门的广泛进化距离上以近似恒定的速率进化。为此,对20种蛋白质的进化速率常数进行了研究。研究发现,不仅在不同种类的脊椎动物中,而且在脊椎动物和节肢动物之间,参与糖醇解途径的四种蛋白质,尤其是醛缩酶C的进化速度几乎是恒定的。醛缩酶C的进化速率(= 0.26 × 10(-9)/位点/年)很可能在动物和植物之间基本保持不变。
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引用次数: 4
Polymorphic distribution and molecular diversification of mitochondrial plasmid-like DNAs in the genus Oryza. 水稻属线粒体质粒样dna的多态分布和分子多样性。
Pub Date : 1995-10-01 DOI: 10.1266/jjg.70.601
S Miyata, A Kanazawa, N Tsutsumi, Y Sano, A Hirai

Four kinds of circular plasmid-like DNA, designated B1, B2, B3 and B4, have been found in the mitochondria of rice (Oryza sativa L.). We analyzed the distribution of families of plasmid-like DNAs homologous to those of O. sativa in 40 strains of the genus Oryza with AA, BB, BBCC, CC, CCDD and EE genomes. Plasmid-like DNAs were observed only strains having AA, CC and CCDD genomes. The distribution patterns of strains with AA genome were highly polymorphic. We amplified the plasmid-like DNAs from strains with the AA genome by PCR and examined restriction fragments length polymorphisms (RFLPs). RFLPs were detected among families of plasmid-like DNA amplified from different strains. This result indicated that some mutations, such as base substitutions and the insertion or deletion of a small fragment of DNA, had occurred and had accumulated during the differentiation of strains with an AA genome.

在水稻(Oryza sativa L.)线粒体中发现了四种环状质粒样DNA,分别为B1、B2、B3和B4。本研究分析了40个稻属菌株AA、BB、BBCC、CC、CCDD和EE基因组中与水稻O. sativa同源质粒样dna的家族分布。质粒样dna仅观察到具有AA、CC和CCDD基因组的菌株。具有AA基因组的菌株分布模式具有高度多态性。我们用PCR扩增了AA基因组菌株的质粒样dna,并检测了限制性内切片段长度多态性(RFLPs)。在不同菌株扩增的质粒样DNA家族中检测到RFLPs。这一结果表明,具有AA基因组的菌株在分化过程中发生了一些突变,如碱基替换和一小段DNA的插入或缺失。
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引用次数: 0
Chromosomal localization of the rat erythropoietin receptor gene by fluorescence in situ hybridization. 荧光原位杂交法定位大鼠促红细胞生成素受体基因。
Pub Date : 1995-08-01 DOI: 10.1266/jjg.70.525
P Liang, K Kitada, M Osaka, T Serikawa, R Takahashi, Y Yamada, H Hiai, T Sugiyama

Erythropoietin stimulates proliferation and differentiation of erythroid progenitor cells by binding to a specific membrane receptor, erythropoietin receptor. By using the genomic clone derived from a rat cosmid library, the rat erythropoietin receptor gene was assigned to chromosome 8q24 by fluorescence in situ hybridization.

促红细胞生成素通过结合特定的膜受体促红细胞生成素受体刺激红细胞祖细胞的增殖和分化。利用大鼠cosmid文库获得的基因组克隆,采用荧光原位杂交技术将大鼠促红细胞生成素受体基因定位到染色体8q24上。
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引用次数: 0
Analysis of mouse hemoglobin alpha-chain locus mutation induced by N-ethyl-N-nitrosourea. n -乙基-n -亚硝基脲致小鼠血红蛋白α链位点突变分析。
Pub Date : 1995-08-01 DOI: 10.1266/jjg.70.497
T Murota

In a mouse specific-locus test in stem-cell spermatogonia of mice after treatment with N-ethyl-N-nitrosourea (ENU), a mutation at the hemoglobin alpha-chain locus was obtained. In an original mutant, the mutation was detected as a change in band density using cellulose acetate electrophoresis, e.g. the slow moving band was much higher than that of normal F1 mice. Yet, migration of the mouse bands was similar. In isoelectric focusing, the migration of a band toward cathode was observed, indicating that the variant hemoglobin is caused by mutation at an alpha-globin chain. This mutation was found to be heritable and viable in homozygous condition from a genetic test on the mutant, suggesting that this mutation would be due to a base-pair change. According to the usual nomenclature of mutation at the hemoglobin locus, the allele symbol of this mutation was tentatively designated as Hbacc3.

用n -乙基-n -亚硝基脲(ENU)对小鼠干细胞精原细胞进行小鼠特异性位点检测,发现血红蛋白α链位点发生突变。在原始突变体中,通过醋酸纤维素电泳检测到突变条带密度的变化,例如慢移动条带比正常F1小鼠高得多。然而,小鼠带的迁移是相似的。在等电聚焦中,观察到一个带向阴极的迁移,表明变异血红蛋白是由α -珠蛋白链突变引起的。通过对突变体的基因测试,发现该突变具有遗传性,并且在纯合子条件下存活,这表明该突变可能是由于碱基对的改变。根据血红蛋白位点突变的常用命名法,该突变的等位基因符号暂定为Hbacc3。
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引用次数: 2
Suppressor of hairless, the Drosophila homologue of RBP-J kappa, transactivates the neurogenic gene E(spl)m8. RBP-J kappa在果蝇中的同源基因——无毛基因抑制子,可激活神经源性基因E(spl)m8。
Pub Date : 1995-08-01 DOI: 10.1266/jjg.70.505
T Furukawa, Y Kobayakawa, K Tamura, K Kimura, M Kawaichi, T Tanimura, T Honjo

Suppressor of Hairless[Su(H)], the Drosophila homologue of RBP-J kappa is a novel type of sequence-specific DNA binding protein without known motifs, and highly conserved in various organisms. Su(H) regulates peripheral nervous system (PNS) development. Recently Su(H) was suggested to participate in the Notch-mediated signal transduction pathway. We show here that the Su(H) protein binds to TGTGGGAA sequence located 616 base-pairs upstream of the transcription initiation site of the Enhancer of split [E(spl)]m8 gene which is mapped to the terminus of the genetic cascade of the neurogenic genes. Su(H) transactivates the E(spl)m8 promoter not only in cultured Drosophila cells but also in vivo. The present study bridges the biochemical gap between Notch and E(spl) in the neurogenic gene cascade including Delta, Notch, deltex, Su(H), Hairless and E(spl).

无毛抑制蛋白[Su(H)]是RBP-J kappa的果蝇同源物,是一种新型的序列特异性DNA结合蛋白,没有已知的基序,在各种生物中高度保守。Su(H)调节周围神经系统(PNS)的发育。最近,Su(H)被认为参与了notch介导的信号转导途径。我们在这里发现,Su(H)蛋白与位于分裂增强子[E(spl)]m8基因转录起始位点上游616个碱基对的TGTGGGAA序列结合,该基因被定位为神经源性基因级联遗传的末端。Su(H)不仅在培养的果蝇细胞中激活E(spl)m8启动子,而且在体内也激活E(spl)m8启动子。本研究填补了Delta、Notch、deltex、Su(H)、Hairless和E(spl)等神经源性基因级联中Notch和E(spl)之间的生化空白。
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引用次数: 62
Molecular characterization of a family of tandemly repetitive DNA sequences (pYS family) in the genus Hemitaxonus (Hymenoptera: Tenthredinidae). 半轴蜂属(膜翅目:蜂科)串联重复DNA序列家族的分子特征。
Pub Date : 1995-08-01 DOI: 10.1266/jjg.70.533
S Sonoda, T Yamada, T Naito, F Nakasuji

Distribution of a family of tandemly repetitive sequences in Hemitaxonus japonicus (pYS family) was investigated among eight sawfly species and host races in the genus Hemitaxonus. High copy numbers of the repetitive sequences were detected in the two host plant races of H. japonicus, race Polystichum polyblepharum (race PP) and race P. tripteron (race PT), and H. sasayamensis, whereas a low copy number in H. minomensis. Comparison of the nucleotide sequences of the basic repeat units demonstrated a high degree of homology among the four tested species with high AT-rich sequences. Minor repeat units shorter than the consensus basic repeat unit of pYS family were found only in races PP and PT of H. japonicus. Analyses of their nucleotide sequences showed the occurrence of the host race specific sub-repeat units.

摘要研究了日本半轴蝇(Hemitaxonus japonicus, pYS科)一个串联重复序列家族在日本半轴蝇属8个锯蝇种和寄主小种中的分布。该重复序列在日本藤(h.japonicus)两个寄主植物种Polystichum polyblepharum (PP)和雷公藤(P. tripteron, PT)和sasayamensis中拷贝数较高,而在野藤(h.minomensis)中拷贝数较低。碱基重复单元的核苷酸序列比较表明,4个被试物种之间具有高度的同源性,具有高AT-rich序列。比pYS家族基本重复单元短的次要重复单元只存在于日本血吸虫PP和PT两个小种中。对它们的核苷酸序列分析表明,存在宿主种族特有的亚重复单位。
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引用次数: 0
Adaptive significance of amylase polymorphism in Drosophila. X. Analysis of alpha-amylase activity of two amylase variants in individual Drosophila subobscura flies. 果蝇淀粉酶多态性的适应性意义。X.亚果蝇个体中两种淀粉酶变异的α -淀粉酶活性分析。
Pub Date : 1995-08-01 DOI: 10.1266/jjg.70.487
V Stojiljković, M Milanović, M Milosević, M Andjelković, D Marinković

Experiments were designed to estimate the variation of alpha-amylase activity in Drosophila subobscura individuals homozygous for AmyS and AmyF alleles at the Amy locus. The measurements of enzyme activities in six groups of male progenies determined in each individual have shown that degree of variation differs between S and F strains. Variability of amylase activity among male progenies of S strain was substantially greater, which also had significantly higher specific amylase activity than in F strain. The analysis of amylase activity variance showed that this variance among the males is 40 times, and among the females 2.7 times smaller in F than in S strain.

实验旨在估计amyys和AmyF等位基因在Amy位点纯合的果蝇亚果蝇个体α -淀粉酶活性的变化。对6组雄性后代的酶活性测定表明,S和F菌株之间的变异程度不同。S菌株雄性后代间淀粉酶活性差异较大,其特异性淀粉酶活性也显著高于F菌株。淀粉酶活性方差分析表明,F株与S株相比,雄性间的淀粉酶活性差异约为40倍,雌性间的淀粉酶活性差异约为2.7倍。
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引用次数: 4
Genetic variation and geographic distribution on the mitochondrial DNA in local populations of the musk shrew, Suncus murinus. 麝鼠地方种群线粒体DNA的遗传变异和地理分布。
Pub Date : 1995-06-25 DOI: 10.1266/jjg.70.321
T Yamagata, K Ohishi, M O Faruque, J S Masangkay, C Ba-Loc, D Vu-Binh, S S Mansjoer, H Ikeda, T Namikawa
The musk shrew (Suncus Murinus) is widely distributed throughout Asia and East Africa. The mitochondrial DNA (mtDNA) of this species was analyzed in individuals from 31 local populations in nine Asian countries and Mauritius, using 17 restriction endonucleases. Although fourteen and nine mtDNA haplotypes were detected from Bangladesh and Nepal, respectively, one to four haplotypes were found in each Southeast Asian country, and one common haplotype existed in Japan, Philippines, Vietnam, Thailand and Indonesia. Clustering analysis of mtDNA haplotypes classified shrew populations to three groups--continental group (Bangladesh and Nepal), islands' group (insular countries and Vietnam) and Malay group. The average nucleotide diversity among these three groups was calculated to be about 3.5%. These results indicate that the origin of feral populations in this species might be old and their population sizes are extremely large in the continent, and suggest a rapid spread of this animal throughout the islands. Although we have not shown yet an evidence of close relationships between islands' and continental mtDNA haplotypes, it is likely that the musk shrew had migrated from the continent in South Asia to the islands in Southeast Asia recently.
麝香鼩(Suncus Murinus)广泛分布于亚洲和东非。利用17种限制性内切酶对亚洲9个国家和毛里求斯的31个当地种群进行了线粒体DNA (mtDNA)分析。虽然在孟加拉国和尼泊尔分别检测到14个和9个mtDNA单倍型,但在东南亚国家各发现1至4个单倍型,在日本、菲律宾、越南、泰国和印度尼西亚存在1个共同的单倍型。mtDNA单倍型聚类分析将鼩鼱种群划分为3个群体——大陆群(孟加拉国和尼泊尔)、岛屿群(岛国和越南)和马来群。这三组的平均核苷酸多样性约为3.5%。这些结果表明,该物种的野生种群起源可能很古老,它们的种群规模在大陆上非常大,并表明该动物在整个岛屿上迅速传播。虽然我们还没有证据表明岛屿和大陆的mtDNA单倍型之间有密切的关系,但麝香鼩很可能是最近才从南亚大陆迁移到东南亚岛屿的。
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引用次数: 22
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Idengaku zasshi
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