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2014 International Workshop on Pattern Recognition in Neuroimaging最新文献

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Multimodal neuroimaging in Alzheimer's disease: Contributions of multi-voxel pattern analysis to the analysis of DTI and resting-state MRI 阿尔茨海默病的多模态神经成像:多体素模式分析对DTI和静息状态MRI分析的贡献
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858540
C. Rondinoni, C. Salmon, Jaicer Gonçalves Rolo, A. C. Santos
Previous findings suggest that temporal coherence between Blood-Oxygen-Level Dependent (BOLD) activation in certain areas is specifically related to the micro-structural organization of fascicles, i.e., the more organized the fibers, the more intense is the communication between areas. This assumption was considered in the analysis of functional and effective connectivity in patients with AD. Support Vector Machines for pattern classification (PRoNTo Toolbox-UCL) were applied to verify the usefulness of Granger-causality effective connectivity maps in correctly classifying patients and controls. Nineteen patients and eighteen healthy controls were recruited for the study and were scanned using DTI and resting state functional connectivity MRI (rs fc-MRI). Analysis of covariance with age as a confounding factor was applied to DTI data to identify areas related to disease progression. Granger mapping was used to identify brain areas related to differences of effective connectivity between groups. Maps were then input to feature extraction procedures. Models were specified with second-level masks and, after training, classifiers were validated by a leave-one-subject-out schedule. The main difference area between groups was found in the white matter below BA6, in the right hemisphere. Weight vector maps showed differences in areas related to attentional processing and auditory stimulus integration. Results point to an association between normal ageing and differences in effective connectivity related to AD. Our results show that degeneration of fibers is complementary to the degeneration of cortical cells, in accordance with the notion that AD is a network disease.
先前的研究结果表明,某些区域的血氧水平依赖性(BOLD)激活之间的时间一致性与神经束的微观结构组织有关,即纤维越有组织,区域之间的交流就越强烈。在分析AD患者的功能和有效连通性时考虑了这一假设。应用支持向量机模式分类(PRoNTo工具箱- ucl)验证格兰杰-因果关系有效连接图在正确分类患者和对照组中的有效性。研究招募了19名患者和18名健康对照,并使用DTI和静息状态功能连接MRI (rs fc-MRI)进行扫描。将年龄作为混杂因素的协方差分析应用于DTI数据,以确定与疾病进展相关的区域。使用格兰杰映射来识别与组间有效连接差异相关的大脑区域。然后将地图输入特征提取程序。用二级掩模指定模型,训练后,分类器通过leave-one-subject-out时间表进行验证。组间差异主要在右半球BA6以下白质区。权重向量图显示了注意处理和听觉刺激整合相关区域的差异。结果表明,正常衰老与AD相关的有效连接差异之间存在关联。我们的研究结果表明,纤维变性与皮质细胞变性是互补的,这与阿尔茨海默病是一种网络疾病的概念是一致的。
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引用次数: 0
Bayesian correlated component analysis for inference of joint EEG activation 联合脑电激活的贝叶斯相关分量分析
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858539
Andreas Trier Poulsen, Simon Kamronn, L. Parra, L. K. Hansen
We propose a probabilistic generative multi-view model to test the representational universality of human information processing. The model is tested in simulated data and in a well-established benchmark EEG dataset.
我们提出了一个概率生成多视图模型来测试人类信息处理的表征普遍性。该模型在模拟数据和已建立的基准EEG数据集中进行了测试。
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引用次数: 2
Dynamic connectivity factorization: Interpretable decompositions of non-stationarity 动态连通性分解:非平稳性的可解释分解
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858524
Aapo Hyvärinen, J. Hirayama, M. Kawanabe
In many multivariate time series, the correlation structure is non-stationary, i.e. it changes over time. Analysis of such non-stationarities is of particular interest in neuroimaging, in which it leads to investigation of the dynamics of connectivity. A fundamental approach for such analysis is to estimate connectivities separately in short time windows, and use existing machine learning methods, such as principal component analysis (PCA), to summarize or visualize the changes in connectivity. Here, we use the PCA approach by Leonardi et al as the starting point and present two new methods. Our goal is to simplify interpretation of the results by finding components in the original data space instead of the connectivity space. First, we show how to further analyse the principal components of connectivity matrices by a tailor-made two-rank matrix approximation, in which the eigenvectors of the conventional low-rank approximation are transformed. Second, we show how to incorporate the two-rank constraint in the estimation of PCA itself to improve the results. We further provide an interpretation of the method in terms of estimation of a probabilistic generative model related to blind source separation methods and ICA. Preliminary experiments on magnetoencephalographic data reveal possibly meaningful non-stationarity patterns in power-to-power coherence of rhythmic sources (i.e. correlation of amplitudes).
在许多多元时间序列中,相关结构是非平稳的,即随时间而变化。对这种非平稳性的分析在神经影像学中是特别有趣的,在神经影像学中,它导致了对连通性动态的研究。这种分析的基本方法是在短时间内单独估计连通性,并使用现有的机器学习方法,如主成分分析(PCA),来总结或可视化连通性的变化。本文以Leonardi等人的PCA方法为出发点,提出了两种新的方法。我们的目标是通过在原始数据空间而不是连接空间中查找组件来简化对结果的解释。首先,我们展示了如何通过定制的二秩矩阵近似进一步分析连通性矩阵的主成分,其中转换了传统低秩近似的特征向量。其次,我们展示了如何将二秩约束纳入主成分分析本身的估计中以改进结果。我们进一步从与盲源分离方法和ICA相关的概率生成模型的估计方面对该方法进行了解释。脑磁图数据的初步实验揭示了节律源的功率对功率相干性(即振幅相关)可能有意义的非平稳性模式。
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引用次数: 2
Parameter interpretation, regularization and source localization in multivariate linear models 多元线性模型中的参数解释、正则化和源定位
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858522
S. Haufe, F. Meinecke, Kai Görgen, Sven Dähne, J. Haynes, B. Blankertz, F. Biessmann
Neuroimaging data are frequently analyzed with multivariate methods. Models expressing the data as a function of underlying factors related to the brain processes under study (signals) are called forward models, while models reversing this functional relationship are called backward models. Weigth vectors of backward models (called extraction filters) indicate the measurement channels informative with respect to isolating the signals. However, being a function of both signal and noise, significant weights may be observed at channels containing pure noise, while a proportion of signal-related channels may be given zero or insignificant weight. In contrast, forward model parameters (activation patterns) may exhibit significant weights only at signal-related channels, and are therefore interpretable with respect to the origin of the brain processes under study. It is sometimes incorrectly assumed that regularization (e.g., sparsification) of backward models makes extraction filters interpretable in the same sense. However, by transforming filters into patterns of corresponding forward models, as outlined here for the linear case, this can be indeed achieved. While these considerations hold for all types of data, the distinction between filters and patterns is particularly crucial for EEG and MEG data: only activation patterns can be localized to brain anatomy using customary inverse methods. We illustrate our theoretical results using a real EEG data example.
神经影像学数据经常用多元方法进行分析。将数据表示为与所研究的大脑过程(信号)相关的潜在因素的函数的模型称为前向模型,而颠倒这种功能关系的模型称为后向模型。后向模型的权重向量(称为提取滤波器)表明测量通道的信息与隔离信号有关。然而,作为信号和噪声的函数,在包含纯噪声的信道中可以观察到显著的权重,而一部分与信号相关的信道可能被赋予零权重或不重要的权重。相比之下,前向模型参数(激活模式)可能仅在信号相关通道中表现出显著的权重,因此可以解释所研究的大脑过程的起源。有时人们错误地认为,后向模型的正则化(例如,稀疏化)使得提取过滤器在同样的意义上是可解释的。然而,通过将过滤器转换为相应正演模型的模式,正如这里对线性情况所概述的那样,这确实可以实现。虽然这些考虑因素适用于所有类型的数据,但过滤器和模式之间的区别对脑电图和脑磁图数据尤为重要:只有激活模式可以使用习惯的逆方法定位到大脑解剖结构。我们用一个真实的脑电数据实例来说明我们的理论结果。
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引用次数: 8
Improved marked point process priors for single neurite tracing 改进了单个神经突跟踪的标记点处理先验
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858509
Sreetama Basu, Wei Tsang Ooi, Daniel Racoceanu
Recent advances in neuroimaging has produced a spurt for automatic neuronal reconstruction algorithms for large scale data. A stochastic marked point process framework for unsupervised, automatic reconstruction of single neurons has been proposed. In this paper, we introduce improved priors modeling arborization patterns encountered in neurons for efficient detection of bifurcation junctions, terminal nodes, and intermediate points on neurite branches. These priors also enforce constraints for preserving the connectedness of the neuronal tree components in spite of imperfect labeling causing intensity inhomogeneity and discontinuities in branches. To demonstrate the effectiveness of the proposed priors, we performed neurite tracing on 3D light microscopy images of Olfactory Projection Fibre axons from the DIADEM data set and obtained good scores. We also analyzed the errors and their sources in the neurite tracing pipeline, in the hope of better integration of neuroimaging and automated tracing.
神经成像的最新进展为大规模数据的自动神经元重建算法带来了井喷。提出了一种用于单神经元无监督自动重建的随机标记点过程框架。在本文中,我们引入了改进的先验建模树形化模式,以有效地检测神经突分支上的分岔连接、终端节点和中间点。尽管不完美的标记导致分支的强度不均匀性和不连续,但这些先验也强制约束保持神经元树组件的连通性。为了证明所提出的先验方法的有效性,我们对DIADEM数据集中嗅觉投影纤维轴突的3D光学显微镜图像进行了神经突追踪,并获得了良好的分数。我们还分析了神经突示踪管道中的误差及其来源,希望能更好地将神经成像与自动示踪结合起来。
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引用次数: 8
In search of biomarkers for schizophrenia using electroencephalography 利用脑电图寻找精神分裂症的生物标志物
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858527
J. Laton, J. V. Schependom, J. Gielen, J. Decoster, T. Moons, J. Keyser, M. Hert, G. Nagels
The diagnostic process for schizophrenia is mainly clinical and has to be performed by an experienced psychiatrist, relying mainly on clinical signs and symptoms. Current neurophysiological measurements can distinguish groups of healthy controls and groups of schizophrenia patients. Individual classification based on neurophysiological measurements only shows moderate accuracy. In this study, we wanted to examine whether it is possible to distinguish controls and patients individually with a good accuracy. To this end we used a combination of features from different test paradigms, in particular the auditory and visual P300 and the mismatch negativity. We selected 54 patients and 54 controls, matched for age and gender, from the data available at the UPC Kortenberg. The EEG-data were high- and low-pass filtered, epoched, artefacts were rejected and the epochs were averaged. Features (latencies and amplitudes of component peaks) were extracted from the averaged signals. The resulting dataset was used to train and test classification algorithms. Here we applied Naïve Bayes and Decision Tree (without and with AdaBoost). A combination of three evoked potentials allowed us to accurately classify individual subjects as either control or patient. For the three investigated classifiers a total accuracy of more than 80%, a sensitivity of above 82% and a specificity of at least 78% was found.
精神分裂症的诊断过程主要是临床的,必须由经验丰富的精神科医生进行,主要依靠临床体征和症状。目前的神经生理学测量可以区分健康对照组和精神分裂症患者组。基于神经生理测量的个体分类只显示出中等的准确性。在这项研究中,我们想要检验是否有可能以良好的准确性单独区分对照组和患者。为此,我们使用了来自不同测试范例的特征组合,特别是听觉和视觉P300以及不匹配的消极性。我们从UPC Kortenberg提供的数据中选择了54名患者和54名对照组,年龄和性别相匹配。对脑电图数据进行高通和低通滤波,epoch,去除伪影,并对epoch进行平均。从平均信号中提取特征(延迟和分量峰幅)。得到的数据集用于训练和测试分类算法。这里我们应用Naïve贝叶斯和决策树(没有AdaBoost和有AdaBoost)。三种诱发电位的组合使我们能够准确地将个体受试者分类为对照组或患者。对于所研究的三种分类器,发现总准确率超过80%,灵敏度超过82%,特异性至少为78%。
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引用次数: 2
Classification of inter-subject fMRI data based on graph kernels 基于图核的跨主题fMRI数据分类
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858549
Sandro Vega-Pons, P. Avesani, M. Andric, U. Hasson
The analysis of human brain connectivity networks has become an increasingly prevalent task in neuroimaging. A few recent studies have shown the possibility of decoding brain states based on brain graph classification. Graph kernels have emerged as a powerful tool for graph comparison that allows the direct use of machine learning classifiers on brain graph collections. They allow classifying graphs with different number of nodes and therefore the inter-subject analysis without any kind of previous alignment of individual subject's data. Using whole-brain fMRI data, in this paper we present a method based on graph kernels that provides above-chance accuracy results for the inter-subject discrimination of two different types of auditory stimuli. We focus our research on determining whether this method is sensitive to the relational information in the data. Indeed, we show that the discriminative information is not only coming from topological features of the graphs like node degree distribution, but also from more complex relational patterns in the neighborhood of each node. Moreover, we investigate the suitability of two different graph representation methods, both based on data-driven parcellation techniques. Finally, we study the influence of noisy connections in our graphs and provide a way to alleviate this problem.
人脑连接网络的分析已成为神经影像学中越来越普遍的任务。最近的一些研究显示了基于脑图分类解码大脑状态的可能性。图核已经成为一种强大的图比较工具,它允许在脑图集合上直接使用机器学习分类器。它们允许对具有不同节点数量的图进行分类,因此无需对单个主题的数据进行任何形式的先前对齐就可以进行主题间分析。利用全脑功能磁共振成像数据,本文提出了一种基于图核的方法,该方法为两种不同类型的听觉刺激的主体间辨别提供了高于机会的准确性结果。我们的研究重点是确定该方法对数据中的关系信息是否敏感。事实上,我们证明了判别信息不仅来自图的拓扑特征,如节点度分布,而且来自每个节点附近更复杂的关系模式。此外,我们还研究了两种不同的图表示方法的适用性,这两种方法都是基于数据驱动的分割技术。最后,我们研究了图中噪声连接的影响,并提供了一种缓解这一问题的方法。
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引用次数: 17
Benchmarking solvers for TV-ℓ1 least-squares and logistic regression in brain imaging 脑成像中TV- l_1最小二乘和逻辑回归的基准求解方法
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858516
Elvis Dohmatob, Alexandre Gramfort, B. Thirion, G. Varoquaux
Learning predictive models from brain imaging data, as in decoding cognitive states from fMRI (functional Magnetic Resonance Imaging), is typically an ill-posed problem as it entails estimating many more parameters than available sample points. This estimation problem thus requires regularization. Total variation regularization, combined with sparse models, has been shown to yield good predictive performance, as well as stable and interpretable maps. However, the corresponding optimization problem is very challenging: it is non-smooth, non-separable and heavily ill-conditioned. For the penalty to fully exercise its structuring effect on the maps, this optimization problem must be solved to a good tolerance resulting in a computational challenge. Here we explore a wide variety of solvers and exhibit their convergence properties on fMRI data. We introduce a variant of smooth solvers and show that it is a promising approach in these settings. Our findings show that care must be taken in solving TV-ℓ1 estimation in brain imaging and highlight the successful strategies.
从脑成像数据中学习预测模型,就像从fMRI(功能性磁共振成像)中解码认知状态一样,是一个典型的不适定问题,因为它需要估计比可用样本点更多的参数。因此,这个估计问题需要正则化。总变差正则化与稀疏模型相结合,已被证明可以产生良好的预测性能,以及稳定和可解释的地图。然而,相应的优化问题是非常具有挑战性的:它是非光滑的、不可分离的和严重病态的。为了使惩罚在地图上充分发挥其结构效应,必须将该优化问题求解到一个良好的容忍度,从而带来计算挑战。在这里,我们探索了各种各样的求解器,并展示了它们在fMRI数据上的收敛特性。我们介绍了一种光滑求解器的变体,并表明它在这些设置中是一种很有前途的方法。我们的研究结果表明,在解决脑成像中的TV- 1估计时必须注意,并突出了成功的策略。
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引用次数: 39
Gaussian mixture models improve fMRI-based image reconstruction 高斯混合模型改进了基于fmri的图像重建
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858542
S. Schoenmakers, M. Gerven, T. Heskes
New computational models have made it possible to reconstruct perceived images from BOLD responses in visual cortex. We expand a linear Gaussian framework for percept decoding with Gaussian mixture models to better represent the prior distribution of images. In our setup, different mixture components correspond to different letter categories. Our framework not only leads to more accurate reconstructions, but also automatically infers semantic categories from low-level visual areas of the human brain.
新的计算模型使得从视觉皮层的BOLD反应中重建感知图像成为可能。我们用高斯混合模型扩展了感知解码的线性高斯框架,以更好地表示图像的先验分布。在我们的设置中,不同的混合成分对应不同的字母类别。我们的框架不仅可以带来更准确的重建,而且还可以从人类大脑的低水平视觉区域自动推断出语义类别。
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引用次数: 5
Hierarchical processing of temporal asymmetry in human auditory cortex 人类听觉皮层颞叶不对称的层次加工
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858547
Alejandro Tabas-Diaz, E. Balaguer-Ballester, D. Pressnitzer, Anita Siebert, A. Rupp
Communication sounds are typically asymmetric in time and human listeners are highly sensitive to short-term temporal asymmetry. Nevertheless neurophysiological correlates of perceptual asymmetry remain largely elusive to current ap-proaches. Physiological recordings suggest that perceptual asymmetry is based on multiple scales of temporal integration within the auditory processing hierarchy. To test this hypothesis, we used magneto-encephalographic recordings to perform a model-driven analysis of auditory evoked fields (AEF) elicited by asymmetric sounds characterised by rising or decreasing envelopes (ramped and damped, respectively), using a hierarchical model of pitch perception with top-down modulation. We found a strong correlation between the perceived salience of ramped and damped stimuli and the AEFs, as quantified by the amplitude of the N100m component. Furthermore, the N100m magnitude is closely mirrored by a hierarchical model with stimulus-driven temporal integration windows of auditory nerve activity patterns. This strong correlation of AEFs, perception and modelling suggests that temporal asymmetry is processed in a hierarchical manner where integration windows are top-down modulated.
交流声音在时间上通常是不对称的,而人类听众对短期时间上的不对称非常敏感。然而,感知不对称的神经生理学相关性在目前的方法中仍然难以捉摸。生理记录表明,知觉不对称是基于听觉加工层次中的多个时间整合尺度。为了验证这一假设,我们使用脑磁记录对以上升或减少包膜(分别为斜坡和阻尼)为特征的不对称声音引发的听觉诱发场(AEF)进行模型驱动分析,使用自上而下调制的音高感知分层模型。我们发现斜坡和阻尼刺激的感知显著性与aef之间存在很强的相关性,这可以通过N100m分量的振幅来量化。此外,N100m的大小与听觉神经活动模式的刺激驱动的时间整合窗口的分层模型密切相关。AEFs、感知和建模之间的这种强相关性表明,时间不对称性是以分层方式处理的,其中整合窗口是自上而下调制的。
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引用次数: 3
期刊
2014 International Workshop on Pattern Recognition in Neuroimaging
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