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2014 International Workshop on Pattern Recognition in Neuroimaging最新文献

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Combining neuroanatomical and clinical data to improve individualized early diagnosis of schizophrenia in subjects at high familial risk 结合神经解剖学和临床资料,提高精神分裂症高家族风险患者的个体化早期诊断
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858552
E. Zarogianni, T. Moorhead, A. Starkey, S. Lawrie
To date, there are no reliable markers for making an early diagnosis of schizophrenia before clinical diagnostic criteria are fully met. Neuroimaging and pattern classification techniques are promising tools towards predicting transition to schizophrenia. Here, we investigated the diagnostic performance of a combination of neuroanatomical and clinical data in predicting transition to schizophrenia in subjects at high familial risk (HR) for the disorder. Baseline structural magnetic resonance imaging (MRI) and clinical data from 17 HR subjects, who subsequently developed schizophrenia and an age and sex-matched group of 17 HR subjects who did not make a transition to the disease, yet had psychotic symptoms, were included in the analysis. We employed Support Vector Machine, along with a recursive feature selection technique to classify subjects at an individual level. Combination of both structural MRI and clinical data achieved an accuracy of 94% in predicting at baseline disease conversion in subjects at genetic HR. Overall, this paper presents a promising step in combining neuroanatomical and clinical information to improve early prediction of schizophrenia.
到目前为止,在完全符合临床诊断标准之前,还没有可靠的标志物来进行精神分裂症的早期诊断。神经影像学和模式分类技术是预测向精神分裂症过渡的有前途的工具。在这里,我们研究了神经解剖学和临床数据的结合在预测精神分裂症高家族风险(HR)受试者过渡到精神分裂症方面的诊断性能。17名随后发展为精神分裂症的HR受试者的基线结构磁共振成像(MRI)和临床数据,以及一组年龄和性别匹配的17名HR受试者,他们没有过渡到精神分裂症,但有精神病症状,被纳入分析。我们使用支持向量机和递归特征选择技术在个体层面对受试者进行分类。结构MRI和临床数据的结合在预测遗传HR受试者的基线疾病转化方面达到94%的准确性。总的来说,本文提出了结合神经解剖学和临床信息来改善精神分裂症早期预测的有希望的一步。
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引用次数: 1
Reduction of confounding effects with voxel-wise Gaussian process regression in structural MRI 结构MRI中基于体素的高斯过程回归减少混杂效应
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858505
A. Abdulkadir, O. Ronneberger, S. Tabrizi, S. Klöppel
We propose to use Gaussian process regression to remove confounds from gray matter (GM) density maps in order to improve performance in automated detection of neurodegenrative diseases. Age, total intracranial volume, sex, and acquisition site were included as design variables. Based on data from the control populations, a Gaussian process regression model was learned for each voxel. This model was used to compute maps of expected GM densities based on the subject's characteristics. For classification, the maps of expected GM densities were subtracted from the observed GM densities, thereby reducing confounding effects. The performance with and without subtraction of confounding effects were evaluated in four classification tasks: (1) patients with mild cognitive impairment (MCI) that did convert to Alzheimer's disease (AD) versus stable MCI patients, (2) patients with AD versus age-matched controls, (3) pre-manifest patients with Huntington's disease (HD) versus controls, and (4) manifest HD patients versus age-matched controls. The proposed method improved the classification performance in most cases, and never caused a significant decrease. The performance was similar to that obtained after reduction of confounding effects with kernel linear regression.
我们建议使用高斯过程回归从灰质(GM)密度图中去除混杂,以提高自动检测神经退行性疾病的性能。年龄、颅内总容积、性别和获得部位作为设计变量。基于来自控制种群的数据,对每个体素学习高斯过程回归模型。该模型用于计算基于受试者特征的预期转基因密度图。为了分类,从观察到的转基因密度中减去预期转基因密度图,从而减少混淆效应。在四个分类任务中评估了有或没有减少混杂效应的表现:(1)轻度认知障碍(MCI)患者与稳定的MCI患者,(2)AD患者与年龄匹配的对照组,(3)未表现出亨廷顿氏病(HD)患者与对照组,(4)表现出HD患者与年龄匹配的对照组。所提出的方法在大多数情况下提高了分类性能,并且不会造成明显的下降。结果与核线性回归减少混杂效应后的结果相似。
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引用次数: 13
A perceptual-to-conceptual gradient of word coding along the ventral path 沿腹侧路径的词编码的感知到概念的梯度
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858512
V. Borghesani, Fabian Pedregosa, E. Eger, M. Buiatti, M. Piazza
The application of multivariate approaches to neuroimaging data analysis is providing cognitive neuroscientists with a new perspective on the neural substrate of conceptual knowledge. In this paper we show how the combined use of decoding models and of representational similarity analysis (RSA) can enhance our ability to investigate the inter-categorical distinctions as well as the intra-categorical similarities of neural semantic representations. By means of a linear decoding model, we have been able to predict the category of the words subjects were seeing while undergoing a functional magnetic resonance images (fMRI) acquisition. Moreover, RSA in anatomically defined region of interest (ROIs) revealed a significant correlation with length of words and real item size in primary and secondary visual areas (V1 and V2), while a semantic distance effect was significant in inferotemporal areas (BA37 and BA20). Together, these findings illustrate the possibility to decode the distinctive neural patterns of semantic categories and to investigate the peculiar aspects of the neural representations of each single category. We have in fact been able to show a significant correlation between cognitive and neural semantic distance and to describe the gradient of information coding that characterizes the ventral path: from purely perceptual to purely conceptual. These results would not have been possible without a double exploration of the same dataset by means of decoding models and RSA.
多元方法在神经成像数据分析中的应用为认知神经科学家提供了一个关于概念知识的神经基础的新视角。在本文中,我们展示了解码模型和表征相似性分析(RSA)的结合使用如何提高我们研究神经语义表征的分类间差异和分类内相似性的能力。通过线性解码模型,我们已经能够预测受试者在进行功能磁共振图像(fMRI)采集时所看到的单词类别。此外,解剖学定义的兴趣区(ROIs)的RSA与主要和次要视觉区域(V1和V2)的单词长度和真实项目大小显著相关,而在颞下区域(BA37和BA20)的语义距离效应显著。总之,这些发现说明了解码语义类别的独特神经模式和研究每个单一类别的神经表征的特殊方面的可能性。事实上,我们已经能够展示认知和神经语义距离之间的显著相关性,并描述了表征腹侧路径的信息编码的梯度:从纯粹的感知到纯粹的概念。如果没有解码模型和RSA对同一数据集的双重探索,这些结果是不可能的。
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引用次数: 3
Nonparametric Bayesian clustering of structural whole brain connectivity in full image resolution 全图像分辨率下结构全脑连通性的非参数贝叶斯聚类
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858507
Karen Sandø Ambrosen, K. J. Albers, T. Dyrby, Mikkel N. Schmidt, Morten Mørup
Diffusion magnetic resonance imaging enables measuring the structural connectivity of the human brain at a high spatial resolution. Local noisy connectivity estimates can be derived using tractography approaches and statistical models are necessary to quantify the brain's salient structural organization. However, statistically modeling these massive structural connectivity datasets is a computational challenging task. We develop a high-performance inference procedure for the infinite relational model (a prominent non-parametric Bayesian model for clustering networks into structurally similar groups) that defines structural units at the resolution of statistical support. We apply the model to a network of structural brain connectivity in full image resolution with more than one hundred thousand regions (voxels in the gray-white matter boundary) and around one hundred million connections. The derived clustering identifies in the order of one thousand salient structural units and we find that the identified units provide better predictive performance than predicting using the full graph or two commonly used atlases. Extracting structural units of brain connectivity at the full image resolution can aid in understanding the underlying connectivity patterns, and the proposed method for large scale data driven generation of structural units provides a promising framework that can exploit the increasing spatial resolution of neuro-imaging technologies.
扩散磁共振成像能够以高空间分辨率测量人类大脑的结构连通性。局部噪声连接估计可以使用神经束成像方法和统计模型来量化大脑的显著结构组织。然而,对这些庞大的结构连接数据集进行统计建模是一项具有计算挑战性的任务。我们为无限关系模型(一个突出的非参数贝叶斯模型,用于将网络聚类成结构相似的组)开发了一个高性能的推理程序,该模型在统计支持的分辨率下定义了结构单元。我们将该模型应用于全图像分辨率的大脑结构连接网络,该网络拥有超过10万个区域(灰质边界的体素)和大约1亿个连接。导出的聚类识别了1000个显著结构单元,我们发现识别的单元提供了比使用完整图或两个常用地图集预测更好的预测性能。在全图像分辨率下提取大脑连接的结构单元可以帮助理解潜在的连接模式,并且所提出的大规模数据驱动的结构单元生成方法提供了一个有前途的框架,可以利用不断增加的空间分辨率的神经成像技术。
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引用次数: 8
Unsupervised metrics of brain region significance for event-related fMRI intersession experiments 事件相关fMRI间歇实验中脑区显著性的无监督度量
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858532
Loizos Markides, D. Gillies
The non-invasive nature of Functional Magnetic Resonance Imaging (fMRI) has encouraged a large number of exploratory research studies that aim to identify regions of the brain that are involved in the workings of specific tasks. Conventionally, this kind of studies make use of supervised encoding methodologies, such as the General Linear Model (GLM), in which the contribution of different brain regions to a given task is studied as a function of the linear regression or correlation of the BOLD signal and the task regressors. Recently, decoding methodologies are taking the lead, as they allow for the use of unsupervised non-parametric approaches for the analysis of group fMRI datasets, such as Independent Component Analysis (ICA). A long standing problem with ICA techniques is the evaluation of the significance of the resulting spatial components that are involved in the underlying tasks that the subjects were performing in the scanner. In this paper, we describe the use of two different statistical association metrics for identifying significant components that result from a group ICA of event-related fMRI data. The suggested metrics have been evaluated against a real fMRI dataset in order to illustrate further their merits and drawbacks.
功能性磁共振成像(fMRI)的非侵入性鼓励了大量的探索性研究,旨在确定参与特定任务工作的大脑区域。通常,这类研究使用监督编码方法,如一般线性模型(GLM),其中不同大脑区域对给定任务的贡献是作为BOLD信号和任务回归量的线性回归或相关的函数来研究的。最近,解码方法处于领先地位,因为它们允许使用无监督的非参数方法来分析组功能磁共振成像数据集,例如独立成分分析(ICA)。ICA技术的一个长期存在的问题是评估结果空间组件的重要性,这些组件涉及受试者在扫描仪中执行的潜在任务。在本文中,我们描述了使用两种不同的统计关联度量来识别从事件相关fMRI数据的一组ICA中产生的重要组成部分。为了进一步说明它们的优点和缺点,建议的指标已经针对真实的功能磁共振成像数据集进行了评估。
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引用次数: 0
Predictive support recovery with TV-Elastic Net penalty and logistic regression: An application to structural MRI 预测支持恢复与电视弹性网惩罚和逻辑回归:应用于结构MRI
Pub Date : 2014-06-04 DOI: 10.1109/PRNI.2014.6858517
Mathieu Dubois, F. Hadj-Selem, Tommy Löfstedt, M. Perrot, C. Fischer, V. Frouin, E. Duchesnay
The use of machine-learning in neuroimaging offers new perspectives in early diagnosis and prognosis of brain diseases. Although such multivariate methods can capture complex relationships in the data, traditional approaches provide irregular (ℓ2 penalty) or scattered (ℓ1 penalty) predictive pattern with a very limited relevance. A penalty like Total Variation (TV) that exploits the natural 3D structure of the images can increase the spatial coherence of the weight map. However, TV penalization leads to non-smooth optimization problems that are hard to minimize. We propose an optimization framework that minimizes any combination of ℓ1, ℓ2, and TV penalties while preserving the exact ℓ1 penalty. This algorithm uses Nesterov's smoothing technique to approximate the TV penalty with a smooth function such that the loss and the penalties are minimized with an exact accelerated proximal gradient algorithm. We propose an original continuation algorithm that uses successively smaller values of the smoothing parameter to reach a prescribed precision while achieving the best possible convergence rate. This algorithm can be used with other losses or penalties. The algorithm is applied on a classification problem on the ADNI dataset. We observe that the TV penalty does not necessarily improve the prediction but provides a major breakthrough in terms of support recovery of the predictive brain regions.
机器学习在神经影像学中的应用为脑部疾病的早期诊断和预后提供了新的视角。尽管这种多变量方法可以捕获数据中的复杂关系,但传统方法提供的是相关性非常有限的不规则(l2惩罚)或分散(l1惩罚)预测模式。像TV这样利用图像自然3D结构的惩罚可以增加权重图的空间一致性。然而,TV惩罚会导致难以最小化的非平滑优化问题。我们提出了一个优化框架,最小化任意组合的l_1, l_2和TV惩罚,同时保持精确的l_1惩罚。该算法使用Nesterov平滑技术用平滑函数近似TV惩罚,使得损失和惩罚通过精确的加速近端梯度算法最小化。我们提出了一种原始的连续算法,该算法使用连续较小的平滑参数值来达到规定的精度,同时达到最佳的收敛速度。该算法可用于其他损失或处罚。将该算法应用于ADNI数据集的分类问题。我们观察到,电视惩罚不一定提高预测,但在支持恢复预测脑区方面提供了重大突破。
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引用次数: 16
MEG decoding across subjects 跨主体脑磁图解码
Pub Date : 2014-04-16 DOI: 10.1109/PRNI.2014.6858538
E. Olivetti, S. M. Kia, P. Avesani
Brain decoding is a data analysis paradigm for neuroimaging experiments that is based on predicting the stimulus presented to the subject from the concurrent brain activity. In order to make inference at the group level, a straightforward but sometimes unsuccessful approach is to train a classifier on the trials of a group of subjects and then to test it on unseen trials from new subjects. The extreme difficulty is related to the structural and functional variability across the subjects. We call this approach decoding across subjects. In this work, we address the problem of decoding across subjects for magnetoen-cephalographic (MEG) experiments and we provide the following contributions: first, we formally describe the problem and show that it belongs to a machine learning sub-field called transductive transfer learning (TTL). Second, we propose to use a simple TTL technique that accounts for the differences between train data and test data. Third, we propose the use of ensemble learning, and specifically of stacked generalization, to address the variability across subjects within train data, with the aim of producing more stable classifiers. On a face vs. scramble task MEG dataset of 16 subjects, we compare the standard approach of not modelling the differences across subjects, to the proposed one of combining TTL and ensemble learning. We show that the proposed approach is consistently more accurate than the standard one.
脑解码是一种神经成像实验的数据分析范式,它基于从同时发生的大脑活动中预测呈现给受试者的刺激。为了在组水平上进行推理,一种简单但有时不成功的方法是在一组受试者的试验上训练分类器,然后在来自新受试者的未见试验上对其进行测试。这种极端的困难与不同学科的结构和功能差异有关。我们称这种方法为跨主题解码。在这项工作中,我们解决了脑磁图(MEG)实验的跨主题解码问题,我们提供了以下贡献:首先,我们正式描述了这个问题,并表明它属于机器学习的子领域,称为传导转移学习(TTL)。其次,我们建议使用一种简单的TTL技术来解释训练数据和测试数据之间的差异。第三,我们建议使用集成学习,特别是堆叠泛化,来解决训练数据中不同主题的可变性,目的是产生更稳定的分类器。在一个包含16个受试者的面部与乱抢任务的MEG数据集上,我们比较了不模拟受试者差异的标准方法和结合TTL和集成学习的建议方法。我们表明,所提出的方法始终比标准方法更准确。
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引用次数: 36
MVPA to enhance the study of rare cognitive events: An investigation of experimental PTSD MVPA加强罕见认知事件的研究:实验性PTSD的研究
Pub Date : 1900-01-01 DOI: 10.1109/PRNI.2014.6858536
K. Niehaus, I. A. Clark, C. Bourne, C. Mackay, E. Holmes, Stephen M. Smith, M. Woolrich, E. Duff
Many cognitive processes are challenging to study due to their scarce occurrence. Here we demonstrate how pattern recognition and brain imaging can enhance the study of such processes by providing fast, sensitive, and non-intrusive detection of these events. This can enable efficient experimental and clinical intervention. We focus on the study of traumatic events producing flashbacks associated with post-traumatic stress disorder (PTSD), using an experimental analogue of trauma (a traumatic film). These events are rare and challenging to reliably elicit in experimental settings. We show that a classifier can be built to predict, based upon brain response, which stimuli are likely to induce these rare flashbacks at the point of exposure. An ability to predict these stimuli makes possible the trialing of context-specific preventative clinical interventions. We present results from two independent datasets, outlining key analytic challenges.
许多认知过程由于很少发生而具有挑战性。在这里,我们展示了模式识别和脑成像如何通过提供这些事件的快速、敏感和非侵入性检测来加强对这些过程的研究。这可以实现有效的实验和临床干预。我们重点研究创伤事件产生与创伤后应激障碍(PTSD)相关的闪回,使用创伤的实验模拟(创伤电影)。这些事件是罕见的,并且很难在实验环境中可靠地引出。我们展示了可以建立一个分类器来预测,基于大脑的反应,哪些刺激可能会在暴露点引起这些罕见的闪回。预测这些刺激的能力使得针对具体情况的预防性临床干预试验成为可能。我们展示了来自两个独立数据集的结果,概述了关键的分析挑战。
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引用次数: 10
期刊
2014 International Workshop on Pattern Recognition in Neuroimaging
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