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2D and 3D cultured human umbilical cord-derived mesenchymal stem cell-conditioned medium has a dual effect in type 1 diabetes model in rats: immunomodulation and beta-cell regeneration. 2D和3D培养人脐带间充质干细胞条件培养基对大鼠1型糖尿病模型具有双重作用:免疫调节和β细胞再生。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-30 DOI: 10.1186/s41232-022-00241-7
Basak Isildar, Serbay Ozkan, Merve Ercin, Selda Gezginci-Oktayoglu, Mahmut Oncul, Meral Koyuturk

Background: Type 1 diabetes (T1D) is a T-cell-mediated autoimmune disease characterized by the irreversible destruction of insulin-producing β-cells in pancreatic islets. Helper and cytotoxic T-cells and cytokine production, which is impaired by this process, take a synergetic role in β-cell destruction, and hyperglycemia develops due to insulin deficiency in the body. Mesenchymal stem cells (MSCs) appear like an excellent therapeutic tool for autoimmune diseases with pluripotent, regenerative, and immunosuppressive properties. Paracrine factors released from MSCs play a role in immunomodulation by increasing angiogenesis and proliferation and suppressing apoptosis. In this context, the study aims to investigate the therapeutic effects of MSC's secretomes by conditioned medium (CM) obtained from human umbilical cord-derived MSCs cultured in 2-dimensional (2D) and 3-dimensional (3D) environments in the T1D model.

Methods: First, MSCs were isolated from the human umbilical cord, and the cells were characterized. Then, two different CMs were prepared by culturing MSCs in 2D and 3D environments. The CM contents were analyzed in terms of total protein, IL-4, IL-10, IL-17, and IFN-λ. In vivo studies were performed in Sprague-Dawley-type rats with an autoimmune T1D model, and twelve doses of CM were administered intraperitoneally for 4 weeks within the framework of a particular treatment model. In order to evaluate immunomodulation, the Treg population was determined in lymphocytes isolated from the spleen after sacrification, and IL-4, IL-10, IL-17, and IFN-λ cytokines were analyzed in serum. Finally, β-cell regeneration was evaluated immunohistochemically by labeling Pdx1, Nkx6.1, and insulin markers, which are critical for the formation of β-cells.

Results: Total protein and IL-4 levels were higher in 3D-CM compared to 2D-CM. In vivo results showed that CMs induce the Treg population and regulate cytokine release. When the immunohistochemical results were evaluated together, it was determined that CM application significantly increased the rate of β-cells in the islets. This increase was at the highest level in the 3D-CM applied group.

Conclusion: The dual therapeutic effect of MSC-CM on immunomodulation and homeostasis/regeneration of β-cells in the T1D model has been demonstrated. Furthermore, this effect could be improved by using 3D scaffolds for culturing MSCs while preparing CM.

背景:1型糖尿病(T1D)是一种t细胞介导的自身免疫性疾病,其特征是胰岛中产生胰岛素的β细胞的不可逆破坏。辅助性和细胞毒性t细胞以及细胞因子的产生在这一过程中受损,在β细胞破坏中起协同作用,并且由于体内胰岛素缺乏而产生高血糖。间充质干细胞(MSCs)具有多能性、再生性和免疫抑制特性,是治疗自身免疫性疾病的良好工具。MSCs释放的旁分泌因子通过增加血管生成和增殖,抑制细胞凋亡,发挥免疫调节作用。在此背景下,本研究旨在研究在T1D模型中,在二维(2D)和三维(3D)环境中培养的人脐带源性间充质干细胞获得的条件培养基(CM)对MSC分泌组的治疗作用。方法:首先从人脐带分离骨髓间充质干细胞,并对其进行表征。然后,通过在二维和三维环境中培养MSCs制备两种不同的CMs。以总蛋白、IL-4、IL-10、IL-17和IFN-λ为指标分析CM的含量。在sprague - dawley型自身免疫性T1D模型大鼠中进行体内研究,在特定治疗模型框架内,腹腔注射12剂CM,持续4周。为了评估免疫调节作用,我们测定了牺牲后脾脏分离淋巴细胞中的Treg群体,并分析了血清中的IL-4、IL-10、IL-17和IFN-λ细胞因子。最后,通过标记Pdx1、Nkx6.1和胰岛素标记物来评估β细胞再生,这些标记物对β细胞的形成至关重要。结果:3D-CM的总蛋白和IL-4水平高于2D-CM。体内实验结果表明,CMs可诱导Treg种群,调节细胞因子的释放。将免疫组化结果结合评估,可以确定CM的应用显著增加了胰岛中β-细胞的比例。这种增加在3D-CM应用组中达到最高水平。结论:mscs - cm在T1D模型中具有免疫调节和β-细胞稳态/再生的双重治疗作用。此外,在制备CM的同时使用3D支架培养MSCs可以改善这种效果。
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引用次数: 6
Cancer ego-system in glioma: an iron-replenishing niche network systemically self-organized by cancer stem cells. 胶质瘤中的癌症自我系统:一个由癌症干细胞系统自组织的补铁生态位网络。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-30 DOI: 10.1186/s41232-022-00240-8
Kouichi Tabu, Tetsuya Taga

For all living organisms, the adaptation to outside environments is an essential determinant to survive natural and artificial selections and to sustain the whole ecosystem intact with functional biodiversity. Likewise, cancer cells have similar characteristics that evade not only stresses from the host-internal innate and adaptive immune systems but also those from host-externally administered therapeutic interventions. Such selfish characteristics of cancer cells lead to the formation of cancerous ecosystem with a wide variety of phenotypic heterogeneity, which should be called cancer "egosystem" from the host point of view. Recently increasing evidence demonstrates that cancer stem cells (CSCs) are responsible for this cancer egosystem by effectively exploiting host inflammatory and hematopoietic cells and thereby reconstructing their own advantageous niches, which may well be a driving force in cancer recurrence. CSCs are further likely to render multiple niches mutually interconnected and cooperating as a network to support back CSCs themselves. Here, we summarize a recently identified iron-replenishing niche network self-organized by glioma CSCs (GSCs) through remote regulation of host myeloid and erythroid lineage cells. GSCs recruit bone marrow (BM)-derived inflammatory monocytes into tumor parenchyma, facilitate their differentiation into macrophages (Mφs) and skew their polarization into pro-tumoral phenotype, i.e., tumor-associated Mφs (TAMs). Meanwhile, GSCs distantly enhance erythropoiesis in host hematopoietic organs like BM and spleen potentially by secreting some soluble mediators that maintain continuous supply of erythrocytes within tumors. In addition, as normal red pulp Mφs (RPMs) under steady state conditions in spleen recycle iron by phagocytosing the aged or damaged erythrocytes (a/dECs) and release it in time of need, TAMs at least in gliomas phagocytose the hemorrhaged erythrocytes within tumors and potentially serve as a source of iron, an important nutrient indispensable to GSC survival and glioma progression. Taken together, these studies provide the substantial evidence that CSCs have a unique strategy to orchestrate multiple niches as an ecosystem that threatens the host living, which in this sense must be an egosystem. Targeting such an adaptive subpopulation of CSCs could achieve drastic disturbance of the CSC niches and subsequent extinction of malignant neoplasms.

对于所有生物来说,适应外部环境是生存于自然和人为选择以及维持整个生态系统完整和功能性生物多样性的基本决定因素。同样,癌细胞也具有类似的特征,不仅可以逃避宿主内部固有免疫系统和适应性免疫系统的压力,还可以逃避宿主外部给予的治疗干预。癌细胞的这种自私自利的特性导致形成了具有多种表型异质性的癌变生态系统,从宿主的角度来看,这应该被称为癌症的“自我系统”。最近越来越多的证据表明,癌症干细胞(CSCs)通过有效地利用宿主的炎症细胞和造血细胞,从而重建自己的优势生态位,从而负责这种癌症自我系统,这很可能是癌症复发的驱动力。csc进一步有可能使多个利基相互联系并作为一个网络合作,以支持csc本身。在这里,我们总结了最近发现的一个由胶质瘤CSCs (GSCs)通过远程调节宿主髓系和红系细胞自我组织的补铁生态位网络。GSCs将骨髓(BM)来源的炎症单核细胞招募到肿瘤实质,促进其分化为巨噬细胞(m - φs),并使其极化为肿瘤前表型,即肿瘤相关的m - φs (tam)。同时,GSCs通过分泌一些可溶性介质,维持肿瘤内红细胞的持续供应,潜在地远距离促进宿主造血器官如骨髓和脾脏的红细胞生成。此外,在稳态条件下,正常的红浆Mφs (rpm)通过吞噬老化或受损的红细胞(a/dECs)在脾脏循环铁,并在需要时释放出来,tam至少在胶质瘤中吞噬肿瘤内的出血红细胞,并可能作为铁的来源,铁是GSC存活和胶质瘤进展所不可缺少的重要营养物质。综上所述,这些研究提供了大量证据,证明csc有一种独特的策略来协调多个生态位,作为一个威胁宿主生活的生态系统,从这个意义上说,宿主必须是一个自我系统。针对这样一个适应性的CSC亚群可以实现CSC生态位的剧烈干扰和随后的恶性肿瘤的灭绝。
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引用次数: 3
Next-generation proteomics of serum extracellular vesicles combined with single-cell RNA sequencing identifies MACROH2A1 associated with refractory COVID-19. 新一代血清细胞外囊泡蛋白质组学结合单细胞RNA测序鉴定出与难治性COVID-19相关的MACROH2A1
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-30 DOI: 10.1186/s41232-022-00243-5
Takahiro Kawasaki, Yoshito Takeda, Ryuya Edahiro, Yuya Shirai, Mari Nogami-Itoh, Takanori Matsuki, Hiroshi Kida, Takatoshi Enomoto, Reina Hara, Yoshimi Noda, Yuichi Adachi, Takayuki Niitsu, Saori Amiya, Yuta Yamaguchi, Teruaki Murakami, Yasuhiro Kato, Takayoshi Morita, Hanako Yoshimura, Makoto Yamamoto, Daisuke Nakatsubo, Kotaro Miyake, Takayuki Shiroyama, Haruhiko Hirata, Jun Adachi, Yukinori Okada, Atsushi Kumanogoh

Background: The coronavirus disease 2019 (COVID-19) pandemic is widespread; however, accurate predictors of refractory cases have not yet been established. Circulating extracellular vesicles, involved in many pathological processes, are ideal resources for biomarker exploration.

Methods: To identify potential serum biomarkers and examine the proteins associated with the pathogenesis of refractory COVID-19, we conducted high-coverage proteomics on serum extracellular vesicles collected from 12 patients with COVID-19 at different disease severity levels and 4 healthy controls. Furthermore, single-cell RNA sequencing of peripheral blood mononuclear cells collected from 10 patients with COVID-19 and 5 healthy controls was performed.

Results: Among the 3046 extracellular vesicle proteins that were identified, expression of MACROH2A1 was significantly elevated in refractory cases compared to non-refractory cases; moreover, its expression was increased according to disease severity. In single-cell RNA sequencing of peripheral blood mononuclear cells, the expression of MACROH2A1 was localized to monocytes and elevated in critical cases. Consistently, single-nucleus RNA sequencing of lung tissues revealed that MACROH2A1 was highly expressed in monocytes and macrophages and was significantly elevated in fatal COVID-19. Moreover, molecular network analysis showed that pathways such as "estrogen signaling pathway," "p160 steroid receptor coactivator (SRC) signaling pathway," and "transcriptional regulation by STAT" were enriched in the transcriptome of monocytes in the peripheral blood mononuclear cells and lungs, and they were also commonly enriched in extracellular vesicle proteomics.

Conclusions: Our findings highlight that MACROH2A1 in extracellular vesicles is a potential biomarker of refractory COVID-19 and may reflect the pathogenesis of COVID-19 in monocytes.

背景:2019冠状病毒病(COVID-19)大流行广泛存在;然而,对难治性病例的准确预测尚未建立。循环细胞外囊泡参与了许多病理过程,是探索生物标志物的理想资源。方法:为了鉴定难治性COVID-19的潜在血清生物标志物并检测与发病机制相关的蛋白质,我们对12例不同疾病严重程度的COVID-19患者和4名健康对照者的血清细胞外囊泡进行了高覆盖率的蛋白质组学分析。此外,对10例COVID-19患者和5名健康对照者的外周血单个核细胞进行单细胞RNA测序。结果:在鉴定的3046个细胞外囊泡蛋白中,与非难治性病例相比,难治性病例中MACROH2A1的表达显著升高;其表达随疾病严重程度的增加而增加。在外周血单核细胞的单细胞RNA测序中,MACROH2A1的表达定位于单核细胞,在危重病例中表达升高。与此一致,肺组织单核RNA测序结果显示,MACROH2A1在单核细胞和巨噬细胞中高表达,在致死性COVID-19中显著升高。此外,分子网络分析显示,外周血单核细胞和肺的转录组中富集了“雌激素信号通路”、“p160类固醇受体共激活因子(SRC)信号通路”和“STAT转录调控”等通路,细胞外囊泡蛋白质组学中也普遍富集。结论:我们的研究结果表明,细胞外囊泡中的MACROH2A1是难治性COVID-19的潜在生物标志物,可能反映了COVID-19在单核细胞中的发病机制。
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引用次数: 0
Current understanding of T cell immunity against SARS-CoV-2. 目前对SARS-CoV-2的T细胞免疫的认识。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-29 DOI: 10.1186/s41232-022-00242-6
Xiuyuan Lu, Sho Yamasaki

As an important part of adaptive immunity, T cells are indispensable in the defense against pathogens including viruses. SARS-CoV-2 is a new human coronavirus that occurred at the end of 2019 and has caused the COVID-19 pandemic. Nevertheless, most of the infected patients recovered without any antiviral therapies, suggesting an effective immunity developed in the bodies. T cell immunity responds upon SARS-CoV-2 infection or vaccination and plays crucial roles in eliminating the viruses and generating T cell memory. Specifically, a subpopulation of CD4+ T cells could support the production of anti-SARS-CoV-2 antibodies, and cytotoxic CD8+ T cells are also protective against the infection. SARS-CoV-2-recognizing T cells could be detected in SARS-CoV-2-unexposed donors, but the role of these cross-reactive T cells is still in debate. T cell responses could be diverse across individuals, mainly due to the polymorphism of HLAs. Thus, compared to antibodies, T cell responses are generally less affected by the mutations of SARS-CoV-2 variants. Up to now, a huge number of studies on SARS-CoV-2-responsive T cells have been published. In this review, we introduced some major findings addressing the questions in the main aspects about T cell responses elicited by SARS-CoV-2, to summarize the current understanding of COVID-19.

T细胞作为适应性免疫的重要组成部分,在抵御包括病毒在内的病原体方面发挥着不可缺少的作用。SARS-CoV-2是一种新的人类冠状病毒,于2019年底发生,并引起了COVID-19大流行。然而,大多数受感染的患者在没有任何抗病毒治疗的情况下康复,这表明体内形成了有效的免疫力。T细胞免疫对SARS-CoV-2感染或疫苗接种作出反应,并在消除病毒和产生T细胞记忆方面发挥关键作用。具体来说,CD4+ T细胞亚群可以支持抗sars - cov -2抗体的产生,细胞毒性CD8+ T细胞也可以防止感染。在未暴露于sars - cov -2的供体中可以检测到识别sars - cov -2的T细胞,但这些交叉反应性T细胞的作用仍存在争议。不同个体的T细胞反应可能不同,这主要是由于hla的多态性。因此,与抗体相比,T细胞反应通常受SARS-CoV-2变体突变的影响较小。到目前为止,已经发表了大量关于sars - cov -2反应性T细胞的研究。本文综述了SARS-CoV-2诱导T细胞应答的主要方面的一些主要发现,以总结目前对COVID-19的认识。
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引用次数: 10
Resolving the conflicts around Par2 opposing roles in regeneration by comparing immune-mediated and toxic-induced injuries. 通过比较免疫介导和毒性诱导的损伤,解决Par2在再生中对立作用的冲突。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-29 DOI: 10.1186/s41232-022-00238-2
Gal Reches, Netta R Blondheim Shraga, Florent Carrette, Assaf Malka, Natalia Saleev, Yehuda Gubbay, Offir Ertracht, Izhak Haviv, Linda M Bradley, Fred Levine, Ron Piran

Background: Different factors may lead to hepatitis. Among which are liver inflammation and poisoning. We chose two hepatitis models, typical for these two underlying causes. Thus, we aimed to characterize the role of protease-activated receptor 2 (Par2) in liver regeneration and inflammation to reconcile Par2 conflicting role in many damage models, which sometimes aggravates the induced damage and sometimes alleviates it.

Methods: WT and knockout (Par2KO) mice were injected with concanavalin A (ConA) to induce immune-mediated hepatitis or with carbon tetrachloride (CCl4) to elicit direct hepatic damage. To distinguish the immune component from the liver regenerative response, we conducted bone marrow (BM) replacements of WT and Par2KO mice and repeated the damage models.

Results: ConA injection caused limited damage in Par2KO mice livers, while in the WT mice severe damage followed by leukocyte infiltration was evident. Reciprocal BM replacement of WT and Par2KO showed that WT BM-reconstituted Par2KO mice displayed marked liver damage, while in Par2KO BM-reconstituted WT mice, the tissue was generally protected. In the CCl4 direct damage model, hepatocytes regenerated in WT mice, whereas Par2KO mice failed to recover. Reciprocal BM replacement did not show significant differences in hepatic regeneration. In Par2KO mice, hepatitis was more apparent, while WT recovered regardless of the BM origin.

Conclusions: We conclude that Par2 activation in the immune system aggravates hepatitis and that Par2 activation in the damaged tissue promotes liver regeneration. When we incorporate this finding and revisit the literature reports, we reconciled the conflicts surrounding Par2's role in injury, recovery, and inflammation.

背景:不同的因素可能导致肝炎。其中包括肝脏炎症和中毒。我们选择了两种肝炎模型,典型的这两个潜在的原因。因此,我们的目的是表征蛋白酶激活受体2 (Par2)在肝脏再生和炎症中的作用,以调和Par2在许多损伤模型中的冲突作用,这种冲突有时会加重诱导损伤,有时会减轻损伤。方法:给WT和敲除型(Par2KO)小鼠注射ConA诱导免疫介导性肝炎,或给四氯化碳(CCl4)直接肝损伤。为了区分免疫成分和肝脏再生反应,我们对WT和Par2KO小鼠进行了骨髓(BM)置换,并重复了损伤模型。结果:ConA注射对Par2KO小鼠肝脏损伤有限,而对WT小鼠肝脏损伤严重,并伴有白细胞浸润。对WT和Par2KO进行BM互换,WT - BM重组的Par2KO小鼠肝脏损伤明显,而Par2KO - BM重组的WT小鼠肝脏组织基本得到保护。在CCl4直接损伤模型中,WT小鼠的肝细胞再生,而Par2KO小鼠则无法恢复。相互替代脑基在肝再生方面没有显着差异。在Par2KO小鼠中,肝炎更为明显,而与BM来源无关的WT恢复。结论:免疫系统中的Par2激活可加重肝炎,而受损组织中的Par2激活可促进肝脏再生。当我们结合这一发现并重新审视文献报道时,我们调和了围绕Par2在损伤、恢复和炎症中的作用的冲突。
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引用次数: 0
Association of cellular immunity with severity of COVID-19 from the perspective of antigen-specific memory T cell responses and cross-reactivity. 从抗原特异性记忆T细胞反应和交叉反应性的角度看细胞免疫与COVID-19严重程度的关联
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-29 DOI: 10.1186/s41232-022-00239-1
Shin-Ichiro Fujii, Satoru Yamasaki, Tomonori Iyoda, Kanako Shimizu

Coronaviruses regularly cause outbreaks of zoonotic diseases characterized by severe pneumonia. The new coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has caused the global pandemic disease COVID-19 that began at the end of 2019 and spread rapidly owing to its infectious nature and rapidly progressing pneumonia. Although the infectivity of SARS-CoV-2 is high, indicated by the worldwide spread of the disease in a very short period, many individuals displayed only subclinical infection, and some of them transmitted the disease to individuals who then developed a severe symptomatic infection. Furthermore, there are differences in the severity of infection across countries, which can be attributed to factors such as the emergence of viral mutations in a short period of time as well as to the immune responses to viral factors. Anti-viral immunity generally consists of neutralizing antibodies that block viral infection and cytotoxic CD8+ T cells that eliminate the virus-infected cells. There is compelling evidence for the role of neutralizing antibodies in protective immunity in SARS-CoV-2 infection. However, the role of CD4+ and CD8+ T cells after the viral entry is complex and warrants a comprehensive discussion. Here, we discuss the protection afforded by cellular immunity against initial infection and development of severe disease. The initial failure of cellular immunity to control the infection worsens the clinical outcomes and functional profiles that inflict tissue damage without effectively eliminating viral reservoirs, while robust T cell responses are associated with mild outcomes. We also discuss persistent long-lasting memory T cell-mediated protection after infection or vaccination, which is rather complicated as it may involve SARS-CoV-2-specific cytotoxic T lymphocytes or cross-reactivity with previously infected seasonal coronaviruses, which are largely related to HLA genotypes. In addition, cross-reactivity with mutant strains is also discussed. Lastly, we discuss appropriate measures to be taken against the disease for immunocompromised patients. In conclusion, we provide evidence and discuss the causal relationship between natural infection- or vaccine-mediated memory T cell immunity and severity of COVID-19. This review is expected to provide a basis to develop strategies for the next generation of T cell-focused vaccines and aid in ending the current pandemic.

冠状病毒经常引起以严重肺炎为特征的人畜共患疾病暴发。新型冠状病毒,即严重急性呼吸综合征冠状病毒2 (SARS-CoV-2),引发了2019年底开始的全球大流行疾病COVID-19,由于其传染性和迅速发展的肺炎而迅速传播。虽然SARS-CoV-2的传染性很高,表明该疾病在很短的时间内在全球范围内传播,但许多个体仅表现出亚临床感染,其中一些个体将该疾病传播给个体,然后发展为严重的症状感染。此外,各国感染的严重程度存在差异,这可归因于诸如在短时间内出现病毒突变以及对病毒因素的免疫反应等因素。抗病毒免疫通常由阻断病毒感染的中和抗体和消除病毒感染细胞的细胞毒性CD8+ T细胞组成。有令人信服的证据表明,中和抗体在SARS-CoV-2感染的保护性免疫中起作用。然而,CD4+和CD8+ T细胞在病毒进入后的作用是复杂的,值得全面讨论。在这里,我们讨论了细胞免疫对初始感染和严重疾病发展的保护作用。细胞免疫控制感染的初始失败恶化了临床结果和造成组织损伤的功能特征,而没有有效地消除病毒库,而强大的T细胞反应与轻度结果相关。我们还讨论了感染或接种疫苗后持续持久记忆T细胞介导的保护,这是相当复杂的,因为它可能涉及sars - cov -2特异性细胞毒性T淋巴细胞或与先前感染的季节性冠状病毒的交叉反应,这在很大程度上与HLA基因型有关。此外,还讨论了与突变株的交叉反应性。最后,我们讨论了免疫功能低下患者应采取的适当措施。总之,我们提供证据并讨论了自然感染或疫苗介导的记忆T细胞免疫与COVID-19严重程度之间的因果关系。这项审查预计将为制定下一代T细胞聚焦疫苗的战略提供基础,并有助于结束当前的大流行。
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引用次数: 8
Collagen type I-mediated mechanotransduction controls epithelial cell fate conversion during intestinal inflammation. i型胶原介导的机械转导控制肠道炎症期间上皮细胞命运的转化。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-28 DOI: 10.1186/s41232-022-00237-3
Sakurako Kobayashi, Nobuhiko Ogasawara, Satoshi Watanabe, Yosuke Yoneyama, Sakura Kirino, Yui Hiraguri, Masami Inoue, Sayaka Nagata, Yoshimi Okamoto-Uchida, Satoshi Kofuji, Hiromichi Shimizu, Go Ito, Tomohiro Mizutani, Shinichi Yamauchi, Yusuke Kinugasa, Yoshihito Kano, Yasuhiro Nemoto, Mamoru Watanabe, Kiichiro Tsuchiya, Hiroshi Nishina, Ryuichi Okamoto, Shiro Yui

Background: The emerging concepts of fetal-like reprogramming following tissue injury have been well recognized as an important cue for resolving regenerative mechanisms of intestinal epithelium during inflammation. We previously revealed that the remodeling of mesenchyme with collagen fibril induces YAP/TAZ-dependent fate conversion of intestinal/colonic epithelial cells covering the wound bed towards fetal-like progenitors. To fully elucidate the mechanisms underlying the link between extracellular matrix (ECM) remodeling of mesenchyme and fetal-like reprogramming of epithelial cells, it is critical to understand how collagen type I influence the phenotype of epithelial cells. In this study, we utilize collagen sphere, which is the epithelial organoids cultured in purified collagen type I, to understand the mechanisms of the inflammatory associated reprogramming. Resolving the entire landscape of regulatory networks of the collagen sphere is useful to dissect the reprogrammed signature of the intestinal epithelium.

Methods: We performed microarray, RNA-seq, and ATAC-seq analyses of the murine collagen sphere in comparison with Matrigel organoid and fetal enterosphere (FEnS). We subsequently cultured human colon epithelium in collagen type I and performed RNA-seq analysis. The enriched genes were validated by gene expression comparison between published gene sets and immunofluorescence in pathological specimens of ulcerative colitis (UC).

Results: The murine collagen sphere was confirmed to have inflammatory and regenerative signatures from RNA-seq analysis. ATAC-seq analysis confirmed that the YAP/TAZ-TEAD axis plays a central role in the induction of the distinctive signature. Among them, TAZ has implied its relevant role in the process of reprogramming and the ATAC-based motif analysis demonstrated not only Tead proteins, but also Fra1 and Runx2, which are highly enriched in the collagen sphere. Additionally, the human collagen sphere also showed a highly significant enrichment of both inflammatory and fetal-like signatures. Immunofluorescence staining confirmed that the representative genes in the human collagen sphere were highly expressed in the inflammatory region of ulcerative colitis.

Conclusions: Collagen type I showed a significant influence in the acquisition of the reprogrammed inflammatory signature in both mice and humans. Dissection of the cell fate conversion and its mechanisms shown in this study can enhance our understanding of how the epithelial signature of inflammation is influenced by the ECM niche.

背景:组织损伤后胎儿样重编程的新概念已被公认为解决炎症期间肠上皮再生机制的重要线索。我们之前揭示了胶原原纤维间质重塑诱导覆盖在伤口床上的肠/结肠上皮细胞向胎儿样祖细胞的YAP/ taz依赖性命运转化。为了充分阐明间质细胞外基质(ECM)重塑与上皮细胞胎儿样重编程之间联系的机制,了解I型胶原如何影响上皮细胞的表型至关重要。在本研究中,我们利用胶原球,即纯化型胶原中培养的上皮类器官,来了解炎症相关重编程的机制。解决胶原球调控网络的整个景观有助于解剖肠上皮的重编程特征。方法:我们对小鼠胶原球进行微阵列、RNA-seq和ATAC-seq分析,并与Matrigel类器官和胎儿肠球(FEnS)进行比较。随后,我们用I型胶原培养人结肠上皮,并进行RNA-seq分析。通过已发表的基因集和溃疡性结肠炎(UC)病理标本的免疫荧光基因表达比较,证实了富集基因的有效性。结果:通过RNA-seq分析证实小鼠胶原球具有炎症和再生特征。ATAC-seq分析证实,YAP/TAZ-TEAD轴在诱导独特特征中起核心作用。其中,TAZ暗示了其在重编程过程中的相关作用,基于atac的基序分析不仅发现了Tead蛋白,还发现了在胶原球中高度富集的Fra1和Runx2蛋白。此外,人胶原球也显示出高度显著的炎症和胎儿样特征的富集。免疫荧光染色证实,人胶原球的代表性基因在溃疡性结肠炎炎症区高度表达。结论:I型胶原蛋白对小鼠和人类重编程炎症特征的获得有显著影响。本研究中对细胞命运转化及其机制的解剖可以增强我们对炎症的上皮特征如何受到ECM生态位的影响的理解。
{"title":"Collagen type I-mediated mechanotransduction controls epithelial cell fate conversion during intestinal inflammation.","authors":"Sakurako Kobayashi,&nbsp;Nobuhiko Ogasawara,&nbsp;Satoshi Watanabe,&nbsp;Yosuke Yoneyama,&nbsp;Sakura Kirino,&nbsp;Yui Hiraguri,&nbsp;Masami Inoue,&nbsp;Sayaka Nagata,&nbsp;Yoshimi Okamoto-Uchida,&nbsp;Satoshi Kofuji,&nbsp;Hiromichi Shimizu,&nbsp;Go Ito,&nbsp;Tomohiro Mizutani,&nbsp;Shinichi Yamauchi,&nbsp;Yusuke Kinugasa,&nbsp;Yoshihito Kano,&nbsp;Yasuhiro Nemoto,&nbsp;Mamoru Watanabe,&nbsp;Kiichiro Tsuchiya,&nbsp;Hiroshi Nishina,&nbsp;Ryuichi Okamoto,&nbsp;Shiro Yui","doi":"10.1186/s41232-022-00237-3","DOIUrl":"https://doi.org/10.1186/s41232-022-00237-3","url":null,"abstract":"<p><strong>Background: </strong>The emerging concepts of fetal-like reprogramming following tissue injury have been well recognized as an important cue for resolving regenerative mechanisms of intestinal epithelium during inflammation. We previously revealed that the remodeling of mesenchyme with collagen fibril induces YAP/TAZ-dependent fate conversion of intestinal/colonic epithelial cells covering the wound bed towards fetal-like progenitors. To fully elucidate the mechanisms underlying the link between extracellular matrix (ECM) remodeling of mesenchyme and fetal-like reprogramming of epithelial cells, it is critical to understand how collagen type I influence the phenotype of epithelial cells. In this study, we utilize collagen sphere, which is the epithelial organoids cultured in purified collagen type I, to understand the mechanisms of the inflammatory associated reprogramming. Resolving the entire landscape of regulatory networks of the collagen sphere is useful to dissect the reprogrammed signature of the intestinal epithelium.</p><p><strong>Methods: </strong>We performed microarray, RNA-seq, and ATAC-seq analyses of the murine collagen sphere in comparison with Matrigel organoid and fetal enterosphere (FEnS). We subsequently cultured human colon epithelium in collagen type I and performed RNA-seq analysis. The enriched genes were validated by gene expression comparison between published gene sets and immunofluorescence in pathological specimens of ulcerative colitis (UC).</p><p><strong>Results: </strong>The murine collagen sphere was confirmed to have inflammatory and regenerative signatures from RNA-seq analysis. ATAC-seq analysis confirmed that the YAP/TAZ-TEAD axis plays a central role in the induction of the distinctive signature. Among them, TAZ has implied its relevant role in the process of reprogramming and the ATAC-based motif analysis demonstrated not only Tead proteins, but also Fra1 and Runx2, which are highly enriched in the collagen sphere. Additionally, the human collagen sphere also showed a highly significant enrichment of both inflammatory and fetal-like signatures. Immunofluorescence staining confirmed that the representative genes in the human collagen sphere were highly expressed in the inflammatory region of ulcerative colitis.</p><p><strong>Conclusions: </strong>Collagen type I showed a significant influence in the acquisition of the reprogrammed inflammatory signature in both mice and humans. Dissection of the cell fate conversion and its mechanisms shown in this study can enhance our understanding of how the epithelial signature of inflammation is influenced by the ECM niche.</p>","PeriodicalId":13588,"journal":{"name":"Inflammation and Regeneration","volume":"42 1","pages":"49"},"PeriodicalIF":8.1,"publicationDate":"2022-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9703763/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10388668","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Mechanisms of cooperative cell-cell interactions in skeletal muscle regeneration. 骨骼肌再生中协同细胞-细胞相互作用的机制。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-16 DOI: 10.1186/s41232-022-00234-6
Hiroyuki Koike, Ichiro Manabe, Yumiko Oishi

Skeletal muscles have an extraordinary capacity to regenerate themselves when injured. Skeletal muscle stem cells, called satellite cells, play a central role in muscle regeneration via three major steps: activation, proliferation, and differentiation. These steps are affected by multiple types of cells, such as immune cells, fibro-adipogenic progenitor cells, and vascular endothelial cells. The widespread use of single-cell sequencing technologies has enabled the identification of novel cell subpopulations associated with muscle regeneration and their regulatory mechanisms. This review summarizes the dynamism of the cellular community that controls and promotes muscle regeneration, with a particular focus on skeletal muscle stem cells.

骨骼肌在受伤时具有非凡的自我再生能力。骨骼肌干细胞,又称卫星细胞,通过激活、增殖和分化这三个主要步骤在肌肉再生中发挥核心作用。这些步骤受到多种细胞的影响,如免疫细胞、纤维脂肪祖细胞和血管内皮细胞。单细胞测序技术的广泛使用已经能够识别与肌肉再生相关的新细胞亚群及其调节机制。这篇综述总结了控制和促进肌肉再生的细胞群落的活力,特别关注骨骼肌干细胞。
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引用次数: 7
Significance of the multiomics approach to elucidate disease mechanisms in humans. 多组学方法阐明人类疾病机制的意义。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-04 DOI: 10.1186/s41232-022-00227-5
Keishi Fujio
{"title":"Significance of the multiomics approach to elucidate disease mechanisms in humans.","authors":"Keishi Fujio","doi":"10.1186/s41232-022-00227-5","DOIUrl":"https://doi.org/10.1186/s41232-022-00227-5","url":null,"abstract":"","PeriodicalId":13588,"journal":{"name":"Inflammation and Regeneration","volume":" ","pages":"41"},"PeriodicalIF":8.1,"publicationDate":"2022-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9635138/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40679346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Localization and movement of Tregs in gastrointestinal tract: a systematic review. 胃肠道Tregs的定位和运动:系统综述。
IF 8.1 3区 医学 Q2 IMMUNOLOGY Pub Date : 2022-11-03 DOI: 10.1186/s41232-022-00232-8
Yosuke Harada, Kentaro Miyamoto, Akihiko Chida, Anna Tojo Okuzawa, Yusuke Yoshimatsu, Yumi Kudo, Tomohisa Sujino

Background: The intestine is rich in food-derived and microbe-derived antigens. Regulatory T cells (Tregs) are an essential T-cell population that prevents systemic autoimmune diseases and inhibits inflammation by encountering antigens. Previously, it was reported that the functional loss of Tregs induces systemic inflammation, including inflammatory bowel disease and graft-versus-host disease in human and murine models. However, there is a dearth of information about how Tregs localize in different tissues and suppress effector cells.

Main body: The development of Tregs and their molecular mechanism in the digestive tract have been elucidated earlier using murine genetic models, infectious models, and human samples. Tregs suppress immune and other nonimmune cells through direct effect and cytokine production. The recent development of in vivo imaging technology allows us to visualize how Tregs localize and move in the settings of inflammation and homeostasis. This is important because, according to a recent report, Treg characterization and function are regulated by their location. Tregs located in the proximal intestine and its draining lymph nodes induce tolerance against food antigens, and those located in the distal intestine suppress the inflammation induced by microbial antigens. Taken together, various Tregs are induced in a location-specific manner in the gastrointestinal tract and influence the homeostasis of the gut.

Conclusion: In this review, we summarize how Tregs are induced in the digestive tract and the application of in vivo Treg imaging to elucidate immune homeostasis in the digestive tract.

背景:肠道富含食物来源和微生物来源的抗原。调节性T细胞(Tregs)是一种重要的T细胞群,可以预防系统性自身免疫性疾病,并通过与抗原相遇来抑制炎症。此前,有报道称Tregs的功能丧失会在人和小鼠模型中诱发全身性炎症,包括炎症性肠病和移植物抗宿主病。然而,关于Tregs如何定位于不同组织并抑制效应细胞的信息缺乏。正文:Tregs在消化道中的发育及其分子机制已经通过小鼠遗传模型、感染模型和人类样本得到了较早的阐明。Tregs通过直接作用和细胞因子的产生抑制免疫细胞和其他非免疫细胞。体内成像技术的最新发展使我们能够可视化treg在炎症和体内平衡的情况下如何定位和移动。这很重要,因为根据最近的一份报告,Treg的特征和功能是由它们的位置调节的。位于近端肠及其引流淋巴结的treg诱导对食物抗原的耐受性,而位于远端肠的treg则抑制微生物抗原引起的炎症。综上所述,各种treg在胃肠道中以特定位置的方式被诱导,并影响肠道的内稳态。结论:本文综述了Treg在消化道中的诱导机制,以及体内Treg成像在消化道免疫稳态研究中的应用。
{"title":"Localization and movement of Tregs in gastrointestinal tract: a systematic review.","authors":"Yosuke Harada,&nbsp;Kentaro Miyamoto,&nbsp;Akihiko Chida,&nbsp;Anna Tojo Okuzawa,&nbsp;Yusuke Yoshimatsu,&nbsp;Yumi Kudo,&nbsp;Tomohisa Sujino","doi":"10.1186/s41232-022-00232-8","DOIUrl":"https://doi.org/10.1186/s41232-022-00232-8","url":null,"abstract":"<p><strong>Background: </strong>The intestine is rich in food-derived and microbe-derived antigens. Regulatory T cells (Tregs) are an essential T-cell population that prevents systemic autoimmune diseases and inhibits inflammation by encountering antigens. Previously, it was reported that the functional loss of Tregs induces systemic inflammation, including inflammatory bowel disease and graft-versus-host disease in human and murine models. However, there is a dearth of information about how Tregs localize in different tissues and suppress effector cells.</p><p><strong>Main body: </strong>The development of Tregs and their molecular mechanism in the digestive tract have been elucidated earlier using murine genetic models, infectious models, and human samples. Tregs suppress immune and other nonimmune cells through direct effect and cytokine production. The recent development of in vivo imaging technology allows us to visualize how Tregs localize and move in the settings of inflammation and homeostasis. This is important because, according to a recent report, Treg characterization and function are regulated by their location. Tregs located in the proximal intestine and its draining lymph nodes induce tolerance against food antigens, and those located in the distal intestine suppress the inflammation induced by microbial antigens. Taken together, various Tregs are induced in a location-specific manner in the gastrointestinal tract and influence the homeostasis of the gut.</p><p><strong>Conclusion: </strong>In this review, we summarize how Tregs are induced in the digestive tract and the application of in vivo Treg imaging to elucidate immune homeostasis in the digestive tract.</p>","PeriodicalId":13588,"journal":{"name":"Inflammation and Regeneration","volume":" ","pages":"47"},"PeriodicalIF":8.1,"publicationDate":"2022-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9632047/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40679350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
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Inflammation and Regeneration
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