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Determination of the Long-Term Stability of Propofol in Human Plasma Frozen for Eight Years and Quantified by UHPLC-MS/MS. UHPLC-MS/MS法测定人血浆冷冻8年丙泊酚的长期稳定性。
IF 1.7 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-08-22 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/7533068
Stefanie Schmidt, Harald Ihmsen, Tino Münster, Jürgen Schüttler, Christian Jeleazcov, Andreas Wehrfritz

The intravenous anesthetic propofol is frequently used for the induction and maintenance of general anesthesia. Propofol has, however, a potential for abuse, and it has been involved in suicide deaths particularly among medical personnel. The long-term stability of propofol concentrations in human plasma samples when stored under normal laboratory conditions over several years might be important for forensic toxicology. The present study investigated the long-term stability of propofol after storage at -20°C for eight years. For this purpose, 67 plasma samples from five patients, who had undergone a former clinical trial, were re-analyzed. Plasma samples were extracted using protein precipitation. Propofol plasma concentrations were determined by ultra-performance liquid chromatography (UPLC) with gradient elution, followed by tandem mass spectrometry with electrospray ionization. Deuterium-labeled propofol was used as an internal standard. The assay was linear in the range of 50-10,000 ng/mL with a limit of detection of 0.5 ng/mL and a lower limit of quantification of 50 ng/mL, respectively. Accuracy and precision were high with intra- and interassay errors within ±5%. The median relative deviation between the measurements in 2023 and 2015 was -7.0% (interquartile range: -19.7% and 5.3%). Therefore, propofol concentrations in human plasma can be considered relatively stable in samples frozen at -20°C over eight years, and plasma samples stored under these conditions might be used for forensic purposes. Trial Registration: ClinicalTrials.gov identifier: NCT02199067.

静脉麻醉药异丙酚常用于全身麻醉的诱导和维持。然而,异丙酚有被滥用的可能,它已涉及自杀死亡,特别是在医务人员中。在正常实验室条件下储存数年的人血浆样品中异丙酚浓度的长期稳定性可能对法医毒理学很重要。本研究考察了异丙酚在-20℃保存8年后的长期稳定性。为此,我们重新分析了5名患者的67份血浆样本,这些患者曾接受过一次临床试验。血浆样品采用蛋白沉淀法提取。采用超高效液相色谱(UPLC) -梯度洗脱-串联质谱-电喷雾电离法测定异丙酚血浆浓度。用氘标记异丙酚作为内标。在50 ~ 10000 ng/mL范围内呈线性关系,检测限为0.5 ng/mL,定量下限为50 ng/mL。准确度和精密度高,测定内和测定间误差在±5%以内。2023年和2015年测量值之间的中位相对偏差为-7.0%(四分位数范围:-19.7%和5.3%)。因此,在-20°C冷冻8年以上的样品中,人血浆中的异丙酚浓度可以被认为是相对稳定的,在这种条件下储存的血浆样品可用于法医目的。试验注册:ClinicalTrials.gov标识符:NCT02199067。
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引用次数: 0
Pharmacokinetics Study of Herb-Drug Interaction of Berberine and Glipizide in Beagle Dogs Using UPLC-MS/MS. 用UPLC-MS/MS研究小檗碱与格列吡嗪在Beagle犬体内的药动学
IF 1.7 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-07-28 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/7941435
He Qi, Wenjiong Wang, Xianghan Zhang, Bingyang Shang

Based on the establishment and validation of a UPLC-MS/MS method for detecting glipizide in beagle plasma, the herb-drug interaction (HDI) between berberine and glipizide was studied. After gradient elution separation of glipizide and internal standard, multiple reaction monitoring was used for detection in positive ion mode. The ion reactions used for quantitative analysis were glipizide m/z 446.0 ⟶ 321.0 and IS m/z 307.1 ⟶ 220.0. Six beagle dogs were treated with glipizide alone and berberine intervention, and the pharmacokinetic changes of glipizide were compared. The UPLC-MS/MS method has good linearity and the advantages of being green, simple, sensitive, and fast. After continuous administration of berberine to beagle dogs for 7 days, the pharmacokinetic process of glipizide changed with C max, AUC(0-t) and AUC(0-∞) increasing, t1/2 prolonging, and CL and Vd decreasing. When using combination therapy, attention should be paid to possible HDI.

在建立并验证比格犬血浆中格列吡嗪检测方法的基础上,研究了小檗碱与格列吡嗪之间的药物相互作用(HDI)。格列吡嗪与内标品经梯度洗脱分离后,采用多反应监测进行正离子模式检测。用于定量分析的离子反应为格列吡嗪m/z 446.0川川市321.0和IS m/z 307.1川川市220.0。采用格列吡嗪单独治疗和小檗碱干预治疗6只beagle犬,比较格列吡嗪的药代动力学变化。UPLC-MS/MS方法线性度好,具有绿色环保、简便、灵敏、快速等优点。小猎犬连续给药7 d后,格列吡嗪的药代动力学过程发生变化,cmax、AUC(0-t)和AUC(0-∞)增加,t1/2延长,CL和Vd降低。当使用联合治疗时,应注意可能的HDI。
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引用次数: 0
A LC-MS/MS Assay for Quantification of Amodiaquine and Desethylamodiaquine in Dried Blood Spots on Filter Paper. LC-MS/MS法测定滤纸干血斑中阿莫地喹和去乙基阿莫地喹的含量。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-06-05 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/5130424
Natpapat Kaewkhao, Joel Tarning, Daniel Blessborn

Artesunate-amodiaquine (ARS-AQ) is a first-line antimalarial treatment recommended by the World Health Organization. AQ is the long acting partner drug in this combination, and therapeutic success is correlated with the terminal exposure to AQ. Dried blood spot (DBS) sampling for AQ is a convenient and minimally invasive technique, especially suitable for clinical studies in resource limited settings and pediatric studies. Our primary aim was to develop and validate a bioanalytical method for quantification of AQ and its active metabolite in capillary blood applied onto filter paper as a DBS sample. The separation was achieved using a reverse phase column (Zorbax SB-CN 50 × 4.6 mm, I.D. 3.5 μm) and a mobile phase consisting of acetonitrile:ammonium formate 20 mM with 0.5% formic acid (15:85, v/v). A 50 μL DBS was punctured with five 3.2 mm punches from the filter paper, and the punches collected correspond to approximately 15 μL of dried blood. The blood was then extracted using a mixture of 0.5% formic acid in water:acetonitrile (50:50, v/v), along with stable isotope-labeled internal standards (AQ-D10 and desethylamodiaquine [DAQ]-D5). Mass spectrometry was used for quantification over the range of 2.03-459 ng/mL for AQ and 3.13-1570 ng/mL for DAQ. The validation of the method was carried out in compliance with regulatory requirements. The intra- and interbatch precisions were below 15% and passed all validation acceptance criteria. No carryover and no matrix effects were detected. Normalized matrix factors (analyte/internal standard) ranged from 0.96 to 1.03 for all analytes, hence no matrix effects. AQ and DAQ were stable in all conditions evaluated. Long-term stability in DBS samples was demonstrated for up to 10 years when stored at -80°C and for 15 months when stored at room temperature. The developed method was demonstrated to be reliable and accurate. This assay may be particularly useful in the context of resource limited settings and in pediatric field studies.

青蒿琥酯-阿莫地喹(ARS-AQ)是世界卫生组织推荐的一线抗疟药物。AQ是该组合的长效伴用药,治疗成功与否与最终暴露于AQ有关。AQ的干血斑(DBS)取样是一种方便、微创的技术,特别适用于资源有限的临床研究和儿科研究。我们的主要目的是开发和验证一种生物分析方法,用于定量应用于滤纸上的毛细血管血液中的AQ及其活性代谢物作为DBS样本。采用反相色谱柱(Zorbax SB-CN 50 × 4.6 mm, id 3.5 μm),流动相为乙腈:甲酸铵20 mm, 0.5%甲酸(15:85,v/v)。用5个3.2 mm的孔从滤纸上刺穿50 μL的DBS,所收集的孔相当于约15 μL的干血。然后用0.5%甲酸水溶液:乙腈(50:50,v/v)的混合物,以及稳定同位素标记的内标(AQ-D10和去乙基氨基二喹[DAQ]-D5)提取血液。质谱法测定AQ为2.03-459 ng/mL, DAQ为3.13-1570 ng/mL。该方法的验证符合法规要求。批内和批间精密度均低于15%,并通过了所有验证验收标准。未检测到结转和基质效应。所有分析物的归一化矩阵因子(分析物/内标物)范围为0.96至1.03,因此没有矩阵效应。AQ和DAQ在所有条件下均稳定。DBS样品在-80°C保存时的长期稳定性可达10年,在室温保存时可达15个月。结果表明,该方法可靠、准确。在资源有限的环境和儿科实地研究中,这种分析可能特别有用。
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引用次数: 0
Direct Spectrophotometric Method for Determination of Cadmium (II) Ions Using Bis-Thiosemicarbazone. 双硫代氨基脲直接光度法测定镉离子。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-05-05 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/3347969
Sulafa Nassar, Gharam I Mohammed, Thoraya A Farghaly

A novel and simple study outlines the advancement of a straightforward and precise spectrophotometric technique for the determination of Cd (II) ions. This method offers a notable benefit as it is a straightforward procedure that does not require additional purification or concentration of the solvent. The concentration of Cd (II) ions was determined in the presence of bis(indoline-2, 3-dione) thiosemicarbazone (L) at a pH of 12 using Briton-Robinson Buffer. The concentration range for Cd (II) ions in the method follows Beer's law and is between (1.8-17.8) × 10-5 mol L-1. The limit of detection is 0.245 μg mL-1(2.2 μmol L-1) and the limit of quantification is 0.817 μg mL-1 (7.3 μmol L-1). The molar ratio between L and Cd (II) ions was 1:2, ensuring the development of a metal complex. The applied method offers numerous benefits, including its simplicity, affordability, convenience of use, quick detection, minimal use of ligands, and high sensitivity. The sensitivity of the analytical approach was verified by carefully selecting appropriate experimental conditions. Additional insights into the composition and arrangement of the complex produced in a solution containing Cd (II) ions and the ligand (L) have been obtained by isolating and studying the solid complex L-Cd. The solid complex, L-Cd, was determined using analytical methods including elemental analysis, UV-Vis spectra, spectral mass, and thermal analysis.

一项新颖而简单的研究概述了一种直接而精确的测定Cd (II)离子的分光光度法技术的进展。这种方法提供了一个显著的好处,因为它是一个简单的过程,不需要额外的纯化或浓缩的溶剂。在pH为12的条件下,用bridon - robinson缓冲液测定了双(吲哚- 2,3 -二酮)硫代氨基脲(L)存在下Cd (II)离子的浓度。该方法中Cd (II)离子的浓度范围为(1.8 ~ 17.8)× 10-5 mol L-1,符合比尔定律。检测限为0.245 μ mL-1(2.2 μmol -1),定量限为0.817 μ mL-1(7.3 μmol -1)。L和Cd (II)离子的摩尔比为1:2,保证了金属配合物的形成。所应用的方法具有许多优点,包括其简单,价格合理,使用方便,快速检测,最小的配体使用和高灵敏度。通过仔细选择合适的实验条件,验证了分析方法的灵敏度。通过分离和研究固体配合物L-Cd,进一步了解了在含有Cd (II)离子和配体(L)的溶液中产生的配合物的组成和排列。固体配合物L-Cd采用元素分析、紫外可见光谱、光谱质量和热分析等分析方法测定。
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引用次数: 0
Comparative Analysis of Serum Magnesium Ion Levels Using Three Measurement Methods: Spectrophotometry, Atomic Absorption Spectrophotometry, and Inductively Coupled Plasma With Optical Emission Spectrophotometry. 分光光度法、原子吸收分光光度法和电感耦合等离子体光学发射分光光度法测定血清镁离子水平的比较分析。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-03-25 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/8853568
Raja Iqbal Mulya Harahap, Intanri Kurniati, Nida Suraya, Tiene Rostini, Bejo Ropii, Maulidwina Bethasari

Magnesium is a cation that plays as an important cofactor in various enzymatic reactions. It is the fourth most abundant cation in the body after sodium, potassium, and calcium. There are various magnesium measurement methods available such as spectrophotometry, atomic absorption spectrophotometry, and inductively coupled plasma-optical emission spectrophotometry. These measurement methods have various advantages and disadvantages in measuring magnesium levels in serum. This study aimed to compare the magnesium measurement results by using three different methods. A total of 221 samples were examined for magnesium levels using spectrophotometry, atomic absorption spectrophotometry, and inductively coupled plasma-optical emission spectrophotometry methods. The results were then grouped into hypomagnesemia, noromagnesemia, and hypermagnesemia according to normal values. The mean and standard deviation were calculated and compared across three different methods. The mean and standard deviation of serum magnesium ion levels measured using spectrophotometry, atomic absorption spectrophotometry, and inductively coupled plasma-optical emission spectrophotometry methods were 1.84 ± 0.43, 1.86 ± 0.43, and 1.85 ± 0.43 (mg/dL), respectively. There were no significant differences (p value > 0.05) in serum magnesium levels using spectrophotometry, atomic absorption spectrophotometry, and inductively coupled plasma-optical emission spectrophotometry measurement methods, indicating similar reliability among the methods.

镁是一种阳离子,在各种酶促反应中起着重要的辅助因子作用。它是人体中含量第四丰富的阳离子,仅次于钠、钾和钙。镁的测量方法有分光光度法、原子吸收分光光度法、电感耦合等离子体光学发射分光光度法等。这些测量方法在测定血清镁水平时各有优缺点。本研究旨在比较三种不同方法测定镁的结果。采用分光光度法、原子吸收分光光度法和电感耦合等离子体光学发射分光光度法检测了221份样品的镁含量。然后根据正常值将结果分为低镁血症、低镁血症和高镁血症。通过三种不同的方法计算和比较平均值和标准差。分光光度法、原子吸收分光光度法和电感耦合等离子体光学发射分光光度法测定血清镁离子水平的平均值和标准差分别为1.84±0.43、1.86±0.43和1.85±0.43 (mg/dL)。分光光度法、原子吸收分光光度法和电感耦合等离子体光学发射分光光度法测定血清镁水平差异无统计学意义(p值> 0.05),表明三种方法的可靠性相似。
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引用次数: 0
ICP-MS Method for Simultaneous Determination of Aluminum, Sodium, and Potassium in Human Albumin Solution for Infusion. ICP-MS同时测定输注用人白蛋白溶液中铝、钠、钾的方法。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-20 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/2793979
Sena Ozlem Gundogdu, Yeliz Aytimur, Seda Turhan, Adem Sahin

Elemental impurities in drug products may pose a risk to patient health. Therefore, maintaining the levels of these impurities below certain limits is essential for patient safety. Human albumin solution, one of the parenteral drugs used for many years, is crucial in various treatments. Also, the European Pharmacopoeia specifies limits for potassium, aluminum, and sodium in this drug. Inductively coupled plasma-atomic absorption spectrometry (ICP-AAS) and ICP-optical emission spectrometry (ICP-OES) are used for detecting elemental impurities. However, neither method can simultaneously analyze all three impurities within the pharmacopeial limits. This study aimed to develop a new method for simultaneously detecting the levels of potassium, aluminum, and sodium in human albumin-based drugs using ICP-mass spectrometry (ICP-MS). The limit of detection (LOD), specificity, linearity, repeatability, and accuracy were examined, and the recovery percentage was calculated. For Na, K, and Al elements, detection limits were calculated as 0.0105767 μg/mL, 0.001748 μg/mL, and 2.0568E - 4 μg/mL, respectively. Precision and reliability of this method have been proven by the linearity regression coefficients that were found as 0.999, 0.999, and 0.995 for Na, K, and Al. In addition, repeatability recovery rates were 98.70%, 98.38%, and 90.83%; accuracy analysis results were 101.45%, 94.53%, and 108.83% for 50% level; 98.26%, 93.93%, and 95.83% for 100% level; 100.48%, 95.90%, and 107.22% for 150% level for Na, K, and Al elements, respectively. This study successfully developed and validated ICP-MS for the simultaneous quantitative determination of the levels of potassium, aluminum, and sodium in human albumin solution.

药品中的元素杂质可能对患者健康构成威胁。因此,保持这些杂质的水平低于一定限度对患者安全至关重要。人白蛋白溶液是一种使用多年的肠外药物,在各种治疗中起着至关重要的作用。此外,欧洲药典还规定了该药中钾、铝和钠的限量。采用电感耦合等离子体原子吸收光谱法(ICP-AAS)和icp -光学发射光谱法(ICP-OES)检测元素杂质。然而,这两种方法都不能同时分析药典规定的所有三种杂质。本研究旨在建立一种利用ICP-MS同时检测人白蛋白类药物中钾、铝、钠含量的新方法。检测方法的检出限(LOD)、特异性、线性度、重复性和准确性,并计算加样回收率。对Na、K和Al元素的检出限分别为0.0105767 μg/mL、0.001748 μg/mL和2.0568E - 4 μg/mL。Na、K、Al的线性回归系数分别为0.999、0.999、0.995,重复性回收率分别为98.70%、98.38%、90.83%,验证了方法的精密度和可靠性;50%水平的准确度分析结果分别为101.45%、94.53%和108.83%;100%水平为98.26%、93.93%、95.83%;Na、K、Al元素150%水平分别为100.48%、95.90%、107.22%。本研究成功建立并验证了ICP-MS同时定量测定人白蛋白溶液中钾、铝、钠含量的方法。
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引用次数: 0
Topological Descriptors of Colorectal Cancer Drugs and Characterizing Physical Properties Via QSPR Analysis. 结直肠癌药物的拓扑描述符和通过QSPR分析表征物理性质。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-15 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/5512172
Sumiya Nasir

Topological descriptors and QSPR analysis are statistical techniques that are highly beneficial for analyzing various physical and chemical characteristics of molecular graphs without necessitating expensive and time-consuming laboratory experiments. The topological descriptor alters the compound to a number and helps in finding physicochemical properties. It more correctly reproduces the theoretical properties of drugs. In this article, the author investigated colorectal drugs capecitabine, leucovorin, tipiracil hydrochloride, etc. and implemented QSPR analysis. Physical qualities such as molar volume, complexity, polarity, and refractivity are the subject of the current study. The outcomes of this study allow for more effective physical property prediction through the use of QSPR models. First, we calculate Tds and secondly perform QSPR analysis. Current work on TIs and QSPR modeling shows a good correlation with physical properties. Moreover, estimated drug results depict and predict the physical properties in an efficient way.

拓扑描述符和QSPR分析是非常有利于分析分子图的各种物理和化学特性的统计技术,而不需要昂贵和耗时的实验室实验。拓扑描述符将化合物改变为一个数字,并有助于发现其物理化学性质。它更准确地再现了药物的理论特性。本文对结直肠药物卡培他滨、亚叶酸素、盐酸替吡拉西等进行了调查,并进行了QSPR分析。物理性质,如摩尔体积、复杂性、极性和折射率是当前研究的主题。本研究的结果允许通过使用QSPR模型进行更有效的物性预测。首先计算Tds,然后进行QSPR分析。目前对ti和QSPR建模的研究表明,它们与物理性质有很好的相关性。此外,估计的药物结果以有效的方式描述和预测物理性质。
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引用次数: 0
Determination and Pharmacokinetics of Acetylcorynoline in Mouse Plasma by UPLC-MS/MS. 超高效液相色谱-串联质谱法测定小鼠血浆中乙酰科络啉的药代动力学。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-06 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/5319104
Mengzhi Xu, Xicheng Dong, Yishun Fan, Yucan Wang, Jinmiao Xu, Jianshe Ma, Xiaomin Yu

Acetylcorynoline is an alkaloid isolated from the tubers of Corydalis ambigua Cham. et Schltdl. It has anti-inflammatory properties with the potential to treat Parkinson's disease. However, the use of UPLC-MS/MS for identifying acetylcorynoline in mouse plasma has not yet been explored. The present study aimed to develop a fast and selective method for determining the amount of acetylcorynoline in mouse plasma using UPLC-MS/MS. Plasma samples (10 μL) were prepared using methanol-induced protein precipitation following the addition of aconitine as an internal standard. The chromatographic separation was accomplished using a UPLC HSS T3 column with acetonitrile and 0.1% formic acid as the mobile phase. The analytes were run for 4.0 min in total. The target fragment ions m/z 410.4 ⟶ 350.3 for acetylcorynoline and m/z 646.6 ⟶ 586.5 for internal standard were used for quantification using multiple reaction monitoring mode. The mouse blood was obtained at different time points after intravenous (5 mg/kg) and oral (20 mg/kg) administration of acetylcorynoline. The calibration plots for acetylcorynoline in mouse plasma showed a linear trend over the whole range of 1-2000 ng/mL. Both the intraday and interday precision relative standard deviations were less than 11%. The half-life in mice was found to be 2.6 ± 0.7 h and 2.7 ± 0.8 h following oral and intravenous administration, respectively. The bioavailability was determined to be 58.9%. The pharmacokinetics and bioavailability of acetylcorynoline in mice were effectively analyzed using this UPLC-MS/MS method, which had a runtime of 4 min per sample and required only 10 μL of plasma.

乙酰紫堇碱是从紫堇块茎中分离得到的一种生物碱。et Schltdl。它具有抗炎特性,有治疗帕金森病的潜力。然而,利用UPLC-MS/MS鉴定小鼠血浆中乙酰寇氨酸的方法尚未得到探索。本研究旨在建立一种快速、选择性测定小鼠血浆中乙酰科络碱含量的UPLC-MS/MS方法。加入乌头碱作为内标,采用甲醇诱导蛋白沉淀法制备血浆样品(10 μL)。色谱分离采用UPLC HSS T3柱,乙腈和0.1%甲酸为流动相。分析物共运行4.0 min。采用多反应监测模式,乙酰科络啉靶片段离子m/z 410.4 - 350.3,内标靶片段离子m/z 646.6 - 586.5进行定量。分别于静脉(5 mg/kg)和口服(20 mg/kg)给药后不同时间点取小鼠血液。在1 ~ 2000 ng/mL范围内,小鼠血浆中乙酰科络啉的校准图呈线性趋势。日内、日间精度相对标准偏差均小于11%。小鼠经口服和静脉给药后的半衰期分别为2.6±0.7 h和2.7±0.8 h。测定其生物利用度为58.9%。采用UPLC-MS/MS方法,每个样品运行时间为4 min,仅需10 μL血浆,有效地分析了乙酰corynoline在小鼠体内的药代动力学和生物利用度。
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引用次数: 0
Efficient Micropropagation of Bistorta amplexicaulis (D.Don) Greene: An Important Medicinal Plant of Western Himalaya. 西喜马拉雅地区一种重要药用植物——石竹的高效微繁研究。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2025-01-29 eCollection Date: 2025-01-01 DOI: 10.1155/ianc/4457383
Mudasir Fayaz, Seema Singh, Irshad Ahmad Bhat, Musadiq Hussain Bhat, Firdous Ahmad Khanday, Alamgir Ahmad Dar

Bistorta amplexicaulis (D.Don) Greene from the family Polygonaceae is an important medicinal plant species. The growing therapeutic use of B. amplexicaulis has led to its population depletion thus requiring its conservation. Herein, an efficient, reproducible and reliable propagation protocol system was established for B. amplexicaulis using nodal segments as explant. Various culture media were tested for the assessment of growth and development of this plant species. On the shoot proliferation and rhizogenesis of regenerated B. amplexicaulis plantlets, the effects of several plant growth regulators (PGRs) were assessed. Direct organogenesis from nodal segments was achieved by culturing the nodal explants on Murashige and Skoog medium supplemented with 2.0 mg·L-1 6-benzylaminopurine (BAP). Shoot multiplication was widely affected by the kind and concentration of PGRs, and the subculturing of in vitro regenerated shootlets on fresh medium. After incubation for 4 weeks at optimum BAP concentration, cultures were transferred to secondary medium with BAP (optimized concentration) supplemented with different auxins (indole acetic acid, indole butyric acid, and naphthalene acetic acid [NAA]). Murashige and Skoog medium enriched with 2.0 mg·L-1 BAP showed the highest shoot induction response (83% ± 3.61%) with mean shoot number (4.67 ± 1.45) and shoot length of 4.33 ± 1.45 cm. Growth medium fortified with 1.0 mg·L-1 α- NAA exhibited maximum rhizogenesis with 4.33 ± 0.88 roots and average root length as 5.50 ± 0.76 cm from regenerated B. amplexicaulis shoots. Acclimatized plants of B. amplexicaulis showed 90% survival. The projected protocol may serve as a treasured tool for the rapid and large-scale multiplication of elite B. amplexicaulis and for germplasm conservation to ensure continuous supply of this plant amid the increasing demand.

扁蓼科扁蓼是一种重要的药用植物。越来越多的治疗用途导致其种群枯竭,因此需要其保护。在此基础上,建立了一种高效、可复制、可靠的以节段为外植体的大黄芽孢杆菌(B. amplexicaulis)传播协议体系。试验了不同的培养基,以评价该植物的生长发育情况。研究了几种植物生长调节剂(pgr)对大黄芽再生苗的增殖和生根的影响。通过在添加2.0 mg·L-1 6-苄基氨基嘌呤(BAP)的Murashige和Skoog培养基上培养,实现了节段直接器官发生。pgr的种类和浓度以及离体再生苗在新鲜培养基上的继代培养对芽的增殖有很大影响。在最佳BAP浓度下培养4周后,将培养物转移到含有BAP(最佳浓度)并添加不同生长素(吲哚乙酸、吲哚丁酸和萘乙酸[NAA])的二次培养基中。在添加2.0 mg·L-1 BAP的Murashige和Skoog培养基中,芽诱导率最高,为83%±3.61%,平均芽数为4.67±1.45,芽长为4.33±1.45 cm。在添加1.0 mg·L-1 α- NAA的培养基中,大黄茎再生根数最多,为4.33±0.88根,平均根长为5.50±0.76 cm。驯化后的植株成活率达90%。该方案可作为一种宝贵的工具,用于快速和大规模的繁殖和种质保护,以确保该植物在不断增长的需求中持续供应。
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引用次数: 0
Bioinformatics and Machine Learning-Based Identification of Critical Biomarkers and Immune Infiltration in Venous Thromboembolism. 基于生物信息学和机器学习的关键生物标志物识别和静脉血栓栓塞的免疫浸润。
IF 1.5 4区 化学 Q3 CHEMISTRY, ANALYTICAL Pub Date : 2024-11-22 eCollection Date: 2024-01-01 DOI: 10.1155/ianc/2202321
Yajing Li, Hongru Deng

Objective: This study aims to use bioinformatics and machine learning algorithms to screen and analyze the key genes involved in venous thromboembolism (VTE) and explore the relationship between these biomarkers and immune cell infiltration. Methods: The gene expression profile with the identifier GSE19151 was downloaded from the GEO database. Differential expression analysis using the limma package was conducted to identify genes that were differentially expressed between VTE and normal samples. Biological activities of these genes were then investigated through GO analysis utilizing the R language package. KEGG and GSEA were also performed to identify key signaling pathways. Furthermore, machine learning techniques were employed to determine hub gene signatures related to VTE, and ROC curves were used to validate the findings. To compare the immune infiltration of healthy and VTE samples, single sample gene set enrichment analysis (ssGSEA) was applied. Lastly, the Spearman correlation coefficient was used to assess the relationship between the expression of hub genes and immune cell infiltration. Results: A total of 628 differentially expressed genes (DEGs) were discovered between the VTE samples and normal samples. GO analysis identified protein polyubiquitination, lysosomal lumen acidification, organellar ribosome, mitochondrial ribosome, ammonium transmembrane transporter activity, and immunoglobulin binding as the processes with the highest abundance of DEGs. KEGG pathway analysis revealed that DEGs were enriched in ribosome, COVID-19, viral infection, oxidative phosphorylation, Parkinson's disease, nonalcoholic fatty liver disease, apoptosis, and cancer. The most prominent KEGG pathways associated with VTE were ribosome, Parkinson's disease, oxidative phosphorylation, Alzheimer's disease, and Huntington's disease according to GSEA findings. DLST and LSP1 were identified as hub gene signatures in VTE by machine learning integrative analysis, and ROC curves confirmed their diagnostic value. Results from ssGSEA indicated a significant difference in the degree of immune cell infiltration between VTE and normal samples, with the expression of DLST and LSP1 positively correlated with the content of some immune cells. The R package, code, and analysis results used in this paper are available on https://github.com/doctorlaby/my-project. Conclusion: Our research is the first to utilize machine learning techniques in identifying DLST and LSP1 as significant biomarkers of VTE. With our findings, we have uncovered new insights into the underlying causes of VTE and potential treatments for affected patients.

目的:本研究旨在利用生物信息学和机器学习算法筛选和分析静脉血栓栓塞(venous thromboembolism, VTE)的关键基因,探讨这些生物标志物与免疫细胞浸润的关系。方法:从GEO数据库下载标识符为GSE19151的基因表达谱。使用limma包进行差异表达分析,以鉴定VTE和正常样本之间差异表达的基因。然后利用R语言包通过GO分析来研究这些基因的生物活性。KEGG和GSEA也被用来确定关键的信号通路。此外,采用机器学习技术来确定与VTE相关的枢纽基因特征,并使用ROC曲线来验证研究结果。采用单样本基因集富集分析(ssGSEA)比较正常和静脉血栓栓塞样本的免疫浸润。最后,采用Spearman相关系数评价hub基因表达与免疫细胞浸润的关系。结果:VTE标本与正常标本共发现628个差异表达基因(DEGs)。氧化石墨烯分析发现,蛋白多泛素化、溶酶体管腔酸化、细胞器核糖体、线粒体核糖体、铵跨膜转运蛋白活性和免疫球蛋白结合是DEGs丰度最高的过程。KEGG通路分析显示,deg在核糖体、COVID-19、病毒感染、氧化磷酸化、帕金森病、非酒精性脂肪性肝病、细胞凋亡和癌症中富集。根据GSEA的发现,与VTE相关的最突出的KEGG通路是核糖体、帕金森病、氧化磷酸化、阿尔茨海默病和亨廷顿病。通过机器学习综合分析,确定DLST和LSP1为VTE的枢纽基因特征,ROC曲线证实了它们的诊断价值。ssGSEA结果显示VTE与正常标本免疫细胞浸润程度有显著差异,DLST和LSP1表达与部分免疫细胞含量呈正相关。本文中使用的R包、代码和分析结果可在https://github.com/doctorlaby/my-project上获得。结论:我们的研究首次利用机器学习技术识别DLST和LSP1作为VTE的重要生物标志物。根据我们的研究结果,我们对静脉血栓栓塞的潜在原因和受影响患者的潜在治疗方法有了新的认识。
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引用次数: 0
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International Journal of Analytical Chemistry
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