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Kaposi Sarcoma in Plain Sight: A Solitary Nasal Papule in Well-Controlled HIV. 卡波西肉瘤:一个孤立的鼻丘疹在良好控制的艾滋病毒。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.1016/j.ijid.2026.108465
Zunaid Ahmed, Willem Izak Visser, Liezel Coetzee, Gwyneth Arendorf
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引用次数: 0
The Impact of Candida Infection on Short-term and Long-term Outcomes in AECOPD Patients: A 3-Year Multicenter Cohort Study Running Title: Candida Infection in AECOPD patients. 念珠菌感染对AECOPD患者短期和长期预后的影响:一项为期3年的多中心队列研究标题:AECOPD患者的念珠菌感染
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.1016/j.ijid.2026.108469
Jiaqi Pu, Yuanming Luo, Hailong Wei, Huiqing Ge, Huiguo Liu, Jianchu Zhang, Xianhua Li, Pinhua Pan, XiuFang Xie, Mengqiu Yi, Lina Cheng, Hui Zhou, Jiarui Zhang, Lige Peng, Jiaxin Zeng, Xueqing Chen, Haixia Zhou, Qun Yi

Background: The clinical significance of Candida infection in patients with acute exacerbations of chronic obstructive pulmonary disease (AECOPD) remains poorly defined.

Methods: This multicenter cohort study analyzed 11,925 hospitalized AECOPD patients from ten centers in China, grouped by Candida infection status. Subgroups were analyzed by Candida species and invasiveness. Primary outcome was 3-year all-cause mortality; secondary outcomes included in-hospital mortality, invasive mechanical ventilation (IMV), non-invasive ventilation (NIV), and intensive care unit (ICU) admission. Propensity score matching and Cox regression were used to adjust for confounders.

Results: Candida-positive AECOPD patients showed significantly worse short-term outcomes, including increased IMV (7.2% vs 3.8%) and NIV use (31.8% vs 18.2%), more ICU admissions (12.7% vs 8.9%), and prolonged hospitalization (15.97 vs 11.16 days, p < 0.001). No significant difference was observed in 30-day mortality between groups (aHR 1.13, 95% CI 0.63-2.03), but 3-year mortality was significantly higher (41.2% vs 30.5%, p < 0.001) in Candida positive group. Subgroup analyses showed no significant differences by species or invasiveness.

Conclusion: Respiratory Candida infection is associated with worse short-term clinical outcomes and increased 3-year mortality in AECOPD patients, but is not an independent risk factor for in-hospital mortality. Neither species nor invasiveness classification offered prognostic value. Screening may identify high-risk patients, but evidence does not support species-specific or β-D-glucan (BDG)-guided therapy among this population.

背景:慢性阻塞性肺疾病急性加重期(AECOPD)患者念珠菌感染的临床意义仍不明确。方法:本多中心队列研究分析了来自中国10个中心的11925例AECOPD住院患者,按念珠菌感染情况分组。按念珠菌种类和侵袭性进行亚群分析。主要结局是3年全因死亡率;次要结局包括住院死亡率、有创机械通气(IMV)、无创通气(NIV)和重症监护病房(ICU)入院情况。使用倾向评分匹配和Cox回归来调整混杂因素。结果:念珠菌阳性AECOPD患者的短期预后明显较差,包括IMV升高(7.2% vs 3.8%)和NIV使用(31.8% vs 18.2%), ICU住院率升高(12.7% vs 8.9%),住院时间延长(15.97 vs 11.16天,p < 0.001)。各组间30天死亡率无显著差异(aHR 1.13, 95% CI 0.63-2.03),但念珠菌阳性组3年死亡率显著高于对照组(41.2% vs 30.5%, p < 0.001)。亚群分析显示,物种和入侵性差异不显著。结论:呼吸道念珠菌感染与AECOPD患者较差的短期临床结局和增加的3年死亡率相关,但不是院内死亡率的独立危险因素。物种和侵袭性分类均无预后价值。筛查可以识别高危患者,但没有证据支持在这一人群中进行物种特异性或β- d -葡聚糖(BDG)指导的治疗。
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引用次数: 0
Immunogenicity, reactogenicity and safety to assess booster vaccinations with BNT162b2 or double-dose mRNA-1273 in adults ≥75 years (EU-COVAT-1-AGED) - final report. 评估75岁以上成人接种BNT162b2或双剂量mRNA-1273加强疫苗的免疫原性、反应性和安全性(EU-COVAT-1-AGED)——最终报告
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.1016/j.ijid.2026.108466
Jannik Stemler, Lusine Yeghiazaryan, Christoph Stephan, Kristin Greve-Isdahl Mohn, Rebecca Jane Cox, Antonio Javier Carcas-Sansuan, Esperanza Romero Rodriguez, José Moltó, Itziar Vergara Mitxeltorena, Isabelle Pink, Tobias Welte, Birutė Zablockienė, Murat Akova, Ullrich Bethe, Sarah Grimm, Jon Salmanton-García, Julia Jakobs, Lea Tischmann, Marouan Zarrouk, Arnd Cüppers, Lena M Biehl, Jan Grothe, Sibylle C Mellinghoff, Julia A Nacov, Julia M Neuhann, Rosanne Sprute, Jesús Frías-Iniesta, Riya Negi, Colette Gaillard, Gurvin Saini, Alejandro García León, Patrick W G Mallon, Christine Lammens, An Hotterbeekx, Katherine Loens, Surbhi Malhotra-Kumar, Herman Goossens, Samir Kumar-Singh, Franz König, Martin Posch, Philipp Koehler, Oliver A Cornely

Background: To determine long-term immunogenicity and reactogenicity of different SARS-CoV-2 mRNA-vaccines in a population ≥75 years in a randomized trial.

Methods: Participants were randomised to receive either BNT162b2 30µg or double booster dose mRNA-1273, i.e.100µg, as 3rd and 4th vaccination (1st and 2nd booster). Primary endpoint was rate of 2-fold geometric mean titre (GMT) antibody increase 14 days after vaccination targeting the receptor binding domain (RBD) region of wild-type SARS-CoV-2. Secondary endpoints included neutralising capacity against wild-type and 25 variants at 14 days (D14) and 12 months (M12). Safety was assessed by monitoring adverse events (AEs) for seven days after vaccination.

Findings: Between Nov-2021 and Sep-2022, 322 participants received a SARS-CoV-2 vaccine as a 1st (Part A) or 2nd booster (Part B). Primary endpoint results have been published previously. In Part A, it was reached by 100% in both vaccine arms with a higher GMT increase in the mRNA-1273 arm (ratio 1.64). At M12, GMT of anti-RBD IgG was slightly higher than at D14 (9,319.7 vs. 8,568.4IU/mL) in the BNT162b2 arm while in the mRNA-1273 arm, GMT was equal (14,163.8 vs.14,266.7IU/mL at D14.) In Part B, primary endpoint was reached by 78.5% subjects in the BNT162b2 and 87.2% in the mRNA-1273 arm (p=0.056), respectively, with a higher GMT increase of anti-RBD IgG for mRNA-1273 (ratio 1.38). At M12, GMT of anti-RBD IgG was markedly lower than at D14 (9,962 vs. 15,248.2IU/mL) in the BNT162b2 arm as well as in the mRNA-1273 arm (12,024.3 vs. 21,325.6IU/mL). Higher neutralising capacity in individuals boostered with mRNA-1273 was detected against wild-type and 15/25 tested variants. Less participants in mRNA-1273 arm had vaccine-related AEs (29.6% vs. 38.5%), but severity was more frequently grade 2 (n=38, 28.1 % vs. 22, 16.3%).

Interpretation: Long-term serological immunogenicity and virus neutralization capacity in subjects ≥75 years was numerically better with a mRNA-1273 100µg booster with comparable safety profile.

背景:在一项随机试验中确定不同SARS-CoV-2 mrna疫苗在≥75岁人群中的长期免疫原性和反应原性。方法:参与者随机接受BNT162b2 30µg或双加强剂量mRNA-1273,即100µg,作为第三和第四次疫苗接种(第一次和第二次加强)。主要终点是针对野生型SARS-CoV-2受体结合域(RBD)区域接种疫苗后14天的2倍几何平均滴度(GMT)抗体增加率。次要终点包括在14天(D14)和12个月(M12)时对野生型和25种变体的中和能力。通过监测疫苗接种后7天的不良事件(ae)来评估安全性。研究结果:在2021年11月至2022年9月期间,322名参与者接受了SARS-CoV-2疫苗作为第一次(a部分)或第二次加强(B部分)。主要终点结果已在之前发表。在A部分中,两个疫苗组均达到100%,mRNA-1273组的GMT增加更高(比率为1.64)。在M12时,BNT162b2组抗rbd IgG的GMT略高于D14组(9,319.7 vs. 8,568.4IU/mL),而在mRNA-1273组中,GMT与D14组相同(14,163.8 vs.14,266.7 iu /mL)。在B部分中,BNT162b2组和mRNA-1273组分别有78.5%和87.2%的受试者达到主要终点(p=0.056), mRNA-1273组抗rbd IgG的GMT升高更高(比值为1.38)。在M12时,抗rbd IgG在BNT162b2组和mRNA-1273组的GMT明显低于D14 (9962 vs. 15,248.2IU/mL)和D14 (12,024.3 vs. 21,325.6IU/mL)。检测到携带mRNA-1273增强的个体对野生型和15/25测试变体具有更高的中和能力。mRNA-1273组较少的参与者发生疫苗相关不良反应(29.6%对38.5%),但严重程度更常见的是2级(n=38, 28.1%对22,16.3%)。解释:≥75岁受试者的长期血清学免疫原性和病毒中和能力在使用mRNA-1273 100µg增强剂时在数值上更好,且具有相当的安全性。
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引用次数: 0
Factors influencing poor long-term outcomes in tuberculous pleurisy patients: A 9-year cohort study. 影响结核性胸膜炎患者不良长期预后的因素:一项为期9年的队列研究
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.1016/j.ijid.2026.108468
Hongyun Ruan, Lei Yu, Zhendong Lu, Dongjie Yan

Aim: To identify risk factors associated with poor long-term outcomes in patients with tuberculous pleurisy (TP) through a 9-year prospective cohort study.

Methods: From May 2014 to November 2018, a total of 464 patients diagnosed with TP were enrolled at Beijing Chest Hospital and followed up until November 2023, with a median follow-up duration of 7.1 years. Poor outcomes were defined as the occurrence of secondary empyema, recurrent pulmonary tuberculosis, or recurrent TP. Cox proportional hazards regression models were used to analyze prognostic factors associated with poor outcomes.

Results: Bilateral TP was independently associated with an increased risk of poor outcomes (adjusted hazard ratio [aHR] 2.68, 95% CI 1.41-5.09, P=0.003). Patients receiving extended anti-tuberculosis therapy also exhibited a significantly higher risk (aHR 3.55, 95% CI 2.05-6.15, P < 0.001). In contrast, standardized treatment was associated with a 93% reduction in the risk of poor outcomes compared with non-standardized treatment (aHR 0.07, 95% CI 0.02-0.24, P < 0.001).

Conclusion: Long-term prognosis in patients with TP is influenced by both disease severity, as reflected by bilateral pleural involvement and the need for extended treatment regimens, and the quality of clinical management, particularly adherence to standardized therapy. Early diagnosis and strict implementation of guideline-recommended treatment should be prioritized, especially among patients at higher risk of adverse outcomes.

目的:通过一项为期9年的前瞻性队列研究,确定与结核性胸膜炎(TP)患者不良长期预后相关的危险因素。方法:2014年5月至2018年11月,北京胸科医院共纳入464例确诊为TP的患者,随访至2023年11月,中位随访时间7.1年。不良预后定义为继发性脓胸、复发性肺结核或复发性TP的发生。采用Cox比例风险回归模型分析与不良预后相关的预后因素。结果:双侧TP与不良结局风险增加独立相关(校正风险比[aHR] 2.68, 95% CI 1.41-5.09, P=0.003)。接受延长抗结核治疗的患者也表现出明显更高的风险(aHR 3.55, 95% CI 2.05-6.15, P < 0.001)。相比之下,与非标准化治疗相比,标准化治疗与不良结局风险降低93%相关(aHR 0.07, 95% CI 0.02-0.24, P < 0.001)。结论:TP患者的长期预后受疾病严重程度(反映在双侧胸膜受累和延长治疗方案的需要)和临床管理质量(特别是对标准化治疗的依从性)两方面的影响。应优先考虑早期诊断和严格执行指南推荐的治疗,特别是在不良后果风险较高的患者中。
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引用次数: 0
Clinical Experience with Metagenomic Next-Generation Sequencing (mNGS) for the Detection of Tropheryma Whipplei in Respiratory Specimens: A Multicenter Retrospective Observational Study. 新一代元基因组测序(mNGS)检测呼吸标本中惠氏滋养瘤的临床经验:一项多中心回顾性观察研究。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-05 DOI: 10.1016/j.ijid.2026.108457
Lingxiao Sun, Yimin Wang, Jian Fang, Zhenpeng Li, Yuyao Yin, Yifan Guo, Qi Wang, Hongbin Chen, Bin Cao, Hui Wang

Background: Tropheryma whipplei (T. whipplei) is the causative bacterium of Whipple's disease (WD), a chronic and systemic infectious condition that predominantly affects the gastrointestinal tract. Sporadic cases of T. whipplei pneumonia have been documented recently.

Methods: This multicenter retrospective observational study was conducted on patients with T.whipplei positive respiratory specimens admitted to Peking University People's Hospital and China-Japan Friendship Hospital, from Apr 2021 to Jul 2024. Metagenomic next-Generation sequencing (mNGS) was performed using the patient'sbronchoalveolar lavage fluid (BALF), and the quantitative polymerase chain reaction (qPCR) of T. whipplei was also adopted. The clinical data of patients were systematically evaluated.

Results: Among 91 patients (aged 25-82, mean 57; 48% male), common symptoms included cough (60%), expectoration (48%), dyspnea (42%), and fever (30%). Notably, 22% were asymptomatic. Besides,20 patients (22%) had a pre-existing condition of interstitial lung disease. Among all 91 patients, 14 were diagnosed with pneumonia, while the remaining 77had bacterial colonization.Pneumonia cases showed higher T. whipplei mNGS reads than colonization (P=0.0298). Samples testing positive for T. whipplei by qPCR exhibited significantly higher mNGS sequence reads compared to qPCR-negative samples (P<0.0001). All pneumonia patients received antibioticstherapy tailored to their condition. One died from respiratory failure, while the remaining 13 recovered.

Conclusion: The application of mNGS on respiratory specimens stands as an exceptional diagnostic modality, proficient in identifying rare microbial infections, exemplified by those induced by T. whipplei. Future research should launch prospective trials to optimize regimens, assess outcomes, and track long - term survival precisely.

背景:惠普尔病(whipplei Tropheryma whipplei)是惠普尔病(Whipple's disease, WD)的致病菌,是一种主要影响胃肠道的慢性全身性感染性疾病。最近有零星的惠伯氏体肺炎病例。方法:对2021年4月至2024年7月北京大学人民医院和中日友好医院收治的惠普氏体阳性呼吸道标本患者进行多中心回顾性观察研究。采用患者支气管肺泡灌洗液(BALF)进行新一代宏基因组测序(mNGS),并采用whipplei T.的定量聚合酶链反应(qPCR)。对患者的临床资料进行系统评价。结果:91例患者(25 ~ 82岁,平均57例,男性48%),常见症状为咳嗽(60%)、咳痰(48%)、呼吸困难(42%)、发热(30%)。值得注意的是,22%的患者无症状。此外,20例患者(22%)存在间质性肺疾病。在所有91名患者中,14人被诊断为肺炎,其余77人有细菌定植。肺炎组whipplei的mNGS读数高于定殖组(P=0.0298)。与qPCR阴性样本相比,qPCR检测为whipplei阳性的样本显示出更高的mNGS序列读数(结论:mNGS在呼吸道标本上的应用是一种特殊的诊断方式,可以熟练地识别罕见的微生物感染,例如由whipplei引起的感染。未来的研究应开展前瞻性试验,以优化方案,评估结果,并精确跟踪长期生存。
{"title":"Clinical Experience with Metagenomic Next-Generation Sequencing (mNGS) for the Detection of Tropheryma Whipplei in Respiratory Specimens: A Multicenter Retrospective Observational Study.","authors":"Lingxiao Sun, Yimin Wang, Jian Fang, Zhenpeng Li, Yuyao Yin, Yifan Guo, Qi Wang, Hongbin Chen, Bin Cao, Hui Wang","doi":"10.1016/j.ijid.2026.108457","DOIUrl":"https://doi.org/10.1016/j.ijid.2026.108457","url":null,"abstract":"<p><strong>Background: </strong>Tropheryma whipplei (T. whipplei) is the causative bacterium of Whipple's disease (WD), a chronic and systemic infectious condition that predominantly affects the gastrointestinal tract. Sporadic cases of T. whipplei pneumonia have been documented recently.</p><p><strong>Methods: </strong>This multicenter retrospective observational study was conducted on patients with T.whipplei positive respiratory specimens admitted to Peking University People's Hospital and China-Japan Friendship Hospital, from Apr 2021 to Jul 2024. Metagenomic next-Generation sequencing (mNGS) was performed using the patient'sbronchoalveolar lavage fluid (BALF), and the quantitative polymerase chain reaction (qPCR) of T. whipplei was also adopted. The clinical data of patients were systematically evaluated.</p><p><strong>Results: </strong>Among 91 patients (aged 25-82, mean 57; 48% male), common symptoms included cough (60%), expectoration (48%), dyspnea (42%), and fever (30%). Notably, 22% were asymptomatic. Besides,20 patients (22%) had a pre-existing condition of interstitial lung disease. Among all 91 patients, 14 were diagnosed with pneumonia, while the remaining 77had bacterial colonization.Pneumonia cases showed higher T. whipplei mNGS reads than colonization (P=0.0298). Samples testing positive for T. whipplei by qPCR exhibited significantly higher mNGS sequence reads compared to qPCR-negative samples (P<0.0001). All pneumonia patients received antibioticstherapy tailored to their condition. One died from respiratory failure, while the remaining 13 recovered.</p><p><strong>Conclusion: </strong>The application of mNGS on respiratory specimens stands as an exceptional diagnostic modality, proficient in identifying rare microbial infections, exemplified by those induced by T. whipplei. Future research should launch prospective trials to optimize regimens, assess outcomes, and track long - term survival precisely.</p>","PeriodicalId":14006,"journal":{"name":"International Journal of Infectious Diseases","volume":" ","pages":"108457"},"PeriodicalIF":4.3,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evidence for Triaging HPV-Positive Women Using Viral Load: Data from Two Large Cohort Screening Projects in Different Regions of China. 使用病毒载量来鉴别hpv阳性妇女的证据:来自中国不同地区的两个大型队列筛查项目的数据。
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1016/j.ijid.2026.108462
Yu Liu, Wenkui Dai, Hui Du, Xin Jiang, Xinfeng Qu, Changzhong Li, Ruifang Wu

Objective: To evaluate the effectiveness of viral load (VL)-based triage strategies for human papillomavirus (HPV)-positive women, utilizing data from two large cohort screening studies.

Methods: We analyzed 1,656 HPV-positive cases identified among 25,419 screening participants. Collected data included HPV testing, cytology, and pathologically confirmed diagnoses. VL-based triage strategies were compared to a guideline-recommended cytology-based triage. The cycle threshold (Ct) value, representing HPV VL, was used for triage, with the 75th percentile of Ct values established as the cut-off. Outcomes were assessed for cervical intraepithelial neoplasia grade 2 or worse (CIN2+) and CIN3+.

Results: The mean participant age was 43 ± 7.99 years. Two triage strategies were compared: (1) HPV-16/18 & other types with Ct ≤ the 75th percentile cut-off (higher viral load), and (2) HPV-16/18 & other types with cytology (referring those with ≥ atypical squamous cells of undetermined significance [ASCUS] for colposcopy). The VL-based strategy demonstrated higher sensitivity than the cytology-based strategy for detecting CIN2+ (91.52% vs. 85.27%, p = 0.016) and was comparable for detecting CIN3+ (95.60% vs. 96.70%, p = 1.000). Similarly, the strategy using HPV-16/18 with Ct ≤ 75th & other types with Ct ≤75th was also comparable to the cytology-based approach for detecting both CIN2+ (87.05% vs. 85.27%, p = 0.636) and CIN3+ (95.60% vs. 96.70%, p = 1.000).

Conclusion: Viral load-based triage effectively identifies cervical precancer/ cancer in HPV-positive individuals without cytology, allows single-sample collection, reduces multiple visits, and may be most useful where cytology is unavailable or unreliable-acknowledging an increased colposcopy referral.

目的:利用两项大型队列筛查研究的数据,评估基于病毒载量(VL)的分诊策略对人乳头瘤病毒(HPV)阳性妇女的有效性。方法:我们分析了25,419名筛查参与者中发现的1,656例hpv阳性病例。收集的数据包括HPV检测、细胞学和病理确诊。将基于细胞学的分诊策略与指南推荐的基于细胞学的分诊进行比较。周期阈值(Ct)值代表HPV VL,用于分类,将Ct值的第75个百分位数作为截止值。评估宫颈上皮内瘤变2级及以上(CIN2+)和CIN3+的结果。结果:平均年龄43±7.99岁。比较两种分诊策略:(1)HPV-16/18和其他类型,Ct≤75个百分点的截止值(较高的病毒载量);(2)HPV-16/18和其他类型的细胞学(指阴道镜检查中不确定意义的非典型鳞状细胞[ASCUS]≥)。基于vll的策略检测CIN2+的灵敏度高于基于细胞学的策略(91.52% vs. 85.27%, p = 0.016),检测CIN3+的灵敏度与基于细胞学的策略相当(95.60% vs. 96.70%, p = 1.000)。同样,使用Ct≤75的HPV-16/18和其他Ct≤75的HPV-16/18检测CIN2+ (87.05% vs. 85.27%, p = 0.636)和CIN3+ (95.60% vs. 96.70%, p = 1.000)的策略也与基于细胞学的方法相当。结论:基于病毒载量的分诊可有效识别hpv阳性个体的宫颈癌前病变/癌症,无需细胞学检查,允许单样本采集,减少多次就诊,并且在细胞学无法获得或不可靠的情况下可能最有用-承认阴道镜转诊增加。
{"title":"Evidence for Triaging HPV-Positive Women Using Viral Load: Data from Two Large Cohort Screening Projects in Different Regions of China.","authors":"Yu Liu, Wenkui Dai, Hui Du, Xin Jiang, Xinfeng Qu, Changzhong Li, Ruifang Wu","doi":"10.1016/j.ijid.2026.108462","DOIUrl":"https://doi.org/10.1016/j.ijid.2026.108462","url":null,"abstract":"<p><strong>Objective: </strong>To evaluate the effectiveness of viral load (VL)-based triage strategies for human papillomavirus (HPV)-positive women, utilizing data from two large cohort screening studies.</p><p><strong>Methods: </strong>We analyzed 1,656 HPV-positive cases identified among 25,419 screening participants. Collected data included HPV testing, cytology, and pathologically confirmed diagnoses. VL-based triage strategies were compared to a guideline-recommended cytology-based triage. The cycle threshold (Ct) value, representing HPV VL, was used for triage, with the 75th percentile of Ct values established as the cut-off. Outcomes were assessed for cervical intraepithelial neoplasia grade 2 or worse (CIN2+) and CIN3+.</p><p><strong>Results: </strong>The mean participant age was 43 ± 7.99 years. Two triage strategies were compared: (1) HPV-16/18 & other types with Ct ≤ the 75th percentile cut-off (higher viral load), and (2) HPV-16/18 & other types with cytology (referring those with ≥ atypical squamous cells of undetermined significance [ASCUS] for colposcopy). The VL-based strategy demonstrated higher sensitivity than the cytology-based strategy for detecting CIN2+ (91.52% vs. 85.27%, p = 0.016) and was comparable for detecting CIN3+ (95.60% vs. 96.70%, p = 1.000). Similarly, the strategy using HPV-16/18 with Ct ≤ 75th & other types with Ct ≤75th was also comparable to the cytology-based approach for detecting both CIN2+ (87.05% vs. 85.27%, p = 0.636) and CIN3+ (95.60% vs. 96.70%, p = 1.000).</p><p><strong>Conclusion: </strong>Viral load-based triage effectively identifies cervical precancer/ cancer in HPV-positive individuals without cytology, allows single-sample collection, reduces multiple visits, and may be most useful where cytology is unavailable or unreliable-acknowledging an increased colposcopy referral.</p>","PeriodicalId":14006,"journal":{"name":"International Journal of Infectious Diseases","volume":" ","pages":"108462"},"PeriodicalIF":4.3,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146131397","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improving recognition of rickettsial infections in Sri Lanka: the value of combined qPCR and ELISA in acute febrile illness. 提高对斯里兰卡立克次体感染的认识:qPCR和ELISA联合检测在急性发热性疾病中的价值
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1016/j.ijid.2026.108460
Neesha Rockwood, Kalpa Kariyawasam, Hua-Wei Chen, Rajalingam Sutharsan, Dhammike Wijesundera, Dhammika Somarathne, Zarook Sahabdeen, Upul Vidanagama, Selladurai Pirasath, Priyantha Senevirathne, Wasana Kudugamana, Sarah Jenkins, Devinda S Muthusinghe, Enoka Corea, Allen L Richards

Introduction: In Sri Lanka, reliable diagnostics for rickettsial infections are limited. We assessed the burden, seroprevalence, and molecular diversity of rickettsial infections in hospitalized patients with acute undifferentiated febrile illness(AUFI).

Methods: AUFI patients were enrolled from the Western (n=540) and Central (n=260) Provinces. Clinical and exposure data, acute and convalescent sera, and buffy coat/eschar samples were collected. Orientia tsutsugamushi(OT) and Rickettsia spp. were detected using OT-specific (47 kDa) and pan-Rickettsia (17 kDa) qPCR assays. Group-specific IgG ELISAs were performed for scrub typhus(STG), typhus group(TG), and spotted fever group(SFG). Acute infection was defined by qPCR positivity and/or a ≥4-fold rise in IgG titres. Genetic diversity was assessed using OT 56kDa TSA and Rickettsia ompB gene sequencing.

Results: qPCR identified 38/800(5%) STG and 25/800(3%) TG/SFG infections. Among participants with paired sera (n=493), acute infections included 25(5%) STG, 11(2%) TG, and 17(3%) SFG cases. Overall, rickettsioses accounted for 86/800(11%) of AUFI cases. SFG seroprevalence was higher in the Central Province (17% vs 6%), while STG seroprevalence was higher in the Western Province (20% vs 13%). Genetic analysis on OT cases showed clustering with Karp, Kato, Buie, TH1811, TH1826 and Ikeda strains. Two cases of rickettsial infections were speciated as R. felis and R. sibirica. Only 19% of acute cases were clinically recognized and 58% received doxycycline.

Conclusion: Rickettsioses were under-recognized, highlighting the need for combining qPCR and ELISA diagnostics to strengthen clinical management and surveillance.

在斯里兰卡,立克次体感染的可靠诊断是有限的。我们评估了急性未分化发热性疾病(AUFI)住院患者立克次体感染的负担、血清阳性率和分子多样性。方法:从西部省(n=540)和中部省(n=260)招募AUFI患者。收集临床和暴露资料、急性期和恢复期血清和灰褐色皮毛/痂样。采用恙虫病东方体(OT)特异性(47 kDa)和泛立克次体(17 kDa) qPCR检测恙虫病东方体和立克次体。对恙虫病组(STG)、斑疹伤寒组(TG)和斑点热组(SFG)进行组特异性IgG elisa检测。急性感染定义为qPCR阳性和/或IgG滴度升高≥4倍。采用OT 56kDa TSA和立克次体ompB基因测序技术评估遗传多样性。结果:qPCR检测到STG感染38/800例(5%),TG/SFG感染25/800例(3%)。在配对血清的参与者中(n=493),急性感染包括25例(5%)STG, 11例(2%)TG和17例(3%)SFG。总体而言,立克次氏病占AUFI病例的86/800(11%)。中部省份SFG血清阳性率较高(17%对6%),而西部省份STG血清阳性率较高(20%对13%)。OT病例遗传分析显示与Karp、Kato、Buie、TH1811、TH1826和Ikeda菌株聚类。2例立克次体感染分别为狐立克体和西伯利亚立克体。只有19%的急性病例被临床确认,58%的病例接受了强力霉素治疗。结论:立克次体病未被充分认识,需要qPCR和ELISA联合诊断,加强临床管理和监测。
{"title":"Improving recognition of rickettsial infections in Sri Lanka: the value of combined qPCR and ELISA in acute febrile illness.","authors":"Neesha Rockwood, Kalpa Kariyawasam, Hua-Wei Chen, Rajalingam Sutharsan, Dhammike Wijesundera, Dhammika Somarathne, Zarook Sahabdeen, Upul Vidanagama, Selladurai Pirasath, Priyantha Senevirathne, Wasana Kudugamana, Sarah Jenkins, Devinda S Muthusinghe, Enoka Corea, Allen L Richards","doi":"10.1016/j.ijid.2026.108460","DOIUrl":"https://doi.org/10.1016/j.ijid.2026.108460","url":null,"abstract":"<p><strong>Introduction: </strong>In Sri Lanka, reliable diagnostics for rickettsial infections are limited. We assessed the burden, seroprevalence, and molecular diversity of rickettsial infections in hospitalized patients with acute undifferentiated febrile illness(AUFI).</p><p><strong>Methods: </strong>AUFI patients were enrolled from the Western (n=540) and Central (n=260) Provinces. Clinical and exposure data, acute and convalescent sera, and buffy coat/eschar samples were collected. Orientia tsutsugamushi(OT) and Rickettsia spp. were detected using OT-specific (47 kDa) and pan-Rickettsia (17 kDa) qPCR assays. Group-specific IgG ELISAs were performed for scrub typhus(STG), typhus group(TG), and spotted fever group(SFG). Acute infection was defined by qPCR positivity and/or a ≥4-fold rise in IgG titres. Genetic diversity was assessed using OT 56kDa TSA and Rickettsia ompB gene sequencing.</p><p><strong>Results: </strong>qPCR identified 38/800(5%) STG and 25/800(3%) TG/SFG infections. Among participants with paired sera (n=493), acute infections included 25(5%) STG, 11(2%) TG, and 17(3%) SFG cases. Overall, rickettsioses accounted for 86/800(11%) of AUFI cases. SFG seroprevalence was higher in the Central Province (17% vs 6%), while STG seroprevalence was higher in the Western Province (20% vs 13%). Genetic analysis on OT cases showed clustering with Karp, Kato, Buie, TH1811, TH1826 and Ikeda strains. Two cases of rickettsial infections were speciated as R. felis and R. sibirica. Only 19% of acute cases were clinically recognized and 58% received doxycycline.</p><p><strong>Conclusion: </strong>Rickettsioses were under-recognized, highlighting the need for combining qPCR and ELISA diagnostics to strengthen clinical management and surveillance.</p>","PeriodicalId":14006,"journal":{"name":"International Journal of Infectious Diseases","volume":" ","pages":"108460"},"PeriodicalIF":4.3,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146131500","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative Evaluation of SARS-CoV-2 Antigens as Capture and Detection Elements in an In-House Antigen-Based ELISA for COVID-19 Total Antibody Detection. 基于内部抗原的COVID-19总抗体ELISA检测中SARS-CoV-2抗原作为捕获元素和检测元素的比较评价
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1016/j.ijid.2026.108461
Catherine B Masangkay, Jhunel G Vinarao, Fedelino F Malbas, Gloria June D Quiñones, Maria Sarah L Lenon, Erryl Kate Noveno, Prince Andre Diagmel, Leah Babad, Mary Glazel Noroña, Catalino Demetria, Normando Gonzaga, Faustino C Icatlo

Background: The global SARS-CoV-2 pandemic highlighted the urgent demand for reliable serological assays to track infection and immune responses. Enzyme immunoassays (EIA) targeting viral antibodies provide a practical platform for quantifying antibody responses in humans and animals, serving as a framework for future pandemic preparedness and response.

Objectives: This study aimed to develop and evaluate an in-house EIA for the detection of total antibodies against SARS-CoV-2 using recombinant antigens: Spike Protein (SP), Receptor Binding Domain (RBD), and Nucleocapsid Protein (NP).

Methods: Recombinant antigens were conjugated to horseradish peroxidase (HRP) for detection in a double-sandwich ELISA format. The optimized assay was compared with an electrochemiluminescence assay (ECLIA) to determine cut-off values via receiver operating characteristic (ROC) curve analysis. Sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and Youden's J statistic were calculated. Assay optimization included testing dilutional linearity, incubation time, and reaction volume. The assay was applied to human and animal serum samples to assess versatility.

Results: Among the antigens tested, the receptor binding domain (RBD) exhibited the highest signal intensity and demonstrated dilutional linearity, outperforming both the spike protein and nucleoprotein in assay sensitivity. The assay demonstrated a sensitivity of 85% and specificity of 100%, with a PPV of 100% and an NPV of 68%. The high Youden's J statistic (0.85) and clear separation between true positive and negative samples underscore the robustness of the RBD antigen in reliably detecting SARS-CoV-2-specific antibodies for serological diagnostics. The optimized EIA protocol allowed for a reduced incubation time without compromising assay performance, and increasing the reaction volume two-fold did not result in a significant gain in signal intensity.

Conclusions: The RBD-based EIA provides a reliable, efficient platform for COVID-19 serological surveillance, suitable for both human and animal testing, and supports broader applications in vaccine evaluation and One Health monitoring.

背景:全球SARS-CoV-2大流行凸显了对可靠血清学检测的迫切需求,以跟踪感染和免疫反应。针对病毒抗体的酶免疫测定(EIA)为定量人类和动物的抗体反应提供了一个实用平台,可作为未来大流行防范和应对的框架。目的:本研究旨在利用刺突蛋白(Spike Protein, SP)、受体结合结构域(Receptor Binding Domain, RBD)和核衣壳蛋白(Nucleocapsid Protein, NP)等重组抗原,开发和评估一种检测SARS-CoV-2总抗体的内部EIA方法。方法:将重组抗原与辣根过氧化物酶(HRP)偶联,采用双夹心ELISA法进行检测。将优化后的方法与电化学发光法(ECLIA)进行比较,通过受试者工作特征(ROC)曲线分析确定截止值。计算敏感性、特异性、阳性预测值(PPV)、阴性预测值(NPV)和Youden's J统计量。实验优化包括检测稀释线性、孵育时间和反应体积。该测定法应用于人类和动物血清样品以评估通用性。结果:在所检测的抗原中,受体结合域(RBD)表现出最高的信号强度和稀释线性,在检测灵敏度上优于刺突蛋白和核蛋白。该检测方法的灵敏度为85%,特异性为100%,PPV为100%,NPV为68%。高约登J统计量(0.85)和真阳性和阴性样本之间的明确分离强调了RBD抗原在可靠地检测sars - cov -2特异性抗体用于血清学诊断方面的稳健性。优化的EIA方案允许在不影响检测性能的情况下减少孵育时间,并且将反应体积增加两倍不会导致信号强度的显着增加。结论:基于rbd的环境影响评估为COVID-19血清学监测提供了一个可靠、高效的平台,适用于人类和动物试验,支持在疫苗评估和One Health监测中更广泛的应用。
{"title":"Comparative Evaluation of SARS-CoV-2 Antigens as Capture and Detection Elements in an In-House Antigen-Based ELISA for COVID-19 Total Antibody Detection.","authors":"Catherine B Masangkay, Jhunel G Vinarao, Fedelino F Malbas, Gloria June D Quiñones, Maria Sarah L Lenon, Erryl Kate Noveno, Prince Andre Diagmel, Leah Babad, Mary Glazel Noroña, Catalino Demetria, Normando Gonzaga, Faustino C Icatlo","doi":"10.1016/j.ijid.2026.108461","DOIUrl":"https://doi.org/10.1016/j.ijid.2026.108461","url":null,"abstract":"<p><strong>Background: </strong>The global SARS-CoV-2 pandemic highlighted the urgent demand for reliable serological assays to track infection and immune responses. Enzyme immunoassays (EIA) targeting viral antibodies provide a practical platform for quantifying antibody responses in humans and animals, serving as a framework for future pandemic preparedness and response.</p><p><strong>Objectives: </strong>This study aimed to develop and evaluate an in-house EIA for the detection of total antibodies against SARS-CoV-2 using recombinant antigens: Spike Protein (SP), Receptor Binding Domain (RBD), and Nucleocapsid Protein (NP).</p><p><strong>Methods: </strong>Recombinant antigens were conjugated to horseradish peroxidase (HRP) for detection in a double-sandwich ELISA format. The optimized assay was compared with an electrochemiluminescence assay (ECLIA) to determine cut-off values via receiver operating characteristic (ROC) curve analysis. Sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and Youden's J statistic were calculated. Assay optimization included testing dilutional linearity, incubation time, and reaction volume. The assay was applied to human and animal serum samples to assess versatility.</p><p><strong>Results: </strong>Among the antigens tested, the receptor binding domain (RBD) exhibited the highest signal intensity and demonstrated dilutional linearity, outperforming both the spike protein and nucleoprotein in assay sensitivity. The assay demonstrated a sensitivity of 85% and specificity of 100%, with a PPV of 100% and an NPV of 68%. The high Youden's J statistic (0.85) and clear separation between true positive and negative samples underscore the robustness of the RBD antigen in reliably detecting SARS-CoV-2-specific antibodies for serological diagnostics. The optimized EIA protocol allowed for a reduced incubation time without compromising assay performance, and increasing the reaction volume two-fold did not result in a significant gain in signal intensity.</p><p><strong>Conclusions: </strong>The RBD-based EIA provides a reliable, efficient platform for COVID-19 serological surveillance, suitable for both human and animal testing, and supports broader applications in vaccine evaluation and One Health monitoring.</p>","PeriodicalId":14006,"journal":{"name":"International Journal of Infectious Diseases","volume":" ","pages":"108461"},"PeriodicalIF":4.3,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146131336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Association Between Beta-Blocker Use and Outcomes in Patients with Sepsis-Induced Myocardial Injury: An Analysis Based on MIMIC-IV and eICU Databases. 基于MIMIC-IV和eICU数据库的分析:败血症诱导心肌损伤患者β受体阻滞剂使用与预后的关系
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1016/j.ijid.2026.108458
Han Wu, Linqian Jiang, Liman Qiu, Zhongbao Lin, Haiyun Liu, Xiankun Lin, Xincai Wang, Long Huang

Background: Sepsis-induced myocardial injury (SIMI) is a severe complication with high mortality. Beta-blocker therapy in SIMI remains controversial, lacking large-sample evidence.

Objective: To evaluate beta-blocker impact on mortality in SIMI patients using MIMIC-IV and eICU databases.

Methods: A retrospective cohort study based on MIMIC-IV (2008-2022) and eICU (2014-2015) databases included adult SIMI patients meeting Sepsis-3.0 criteria with elevated cardiac troponin. The primary exposure was beta-blocker use during ICU stay, and the primary outcome was in-hospital all-cause mortality. 1:1 propensity score matching was used to balance baseline characteristics, with multiple sensitivity analyses to verify result robustness.

Results: MIMIC-IV included 2,368 SIMI patients (1,338 using beta-blockers); eICU included 3,805 patients (1,030 using beta-blockers). After propensity score matching (MIMIC-IV: 837/group; eICU: 902/group), beta-blocker use was associated with a significant reduction in in-hospital mortality (MIMIC-IV: 19.7% vs 29.9%, OR=0.75, 95%CI: 0.60-0.94; eICU: 28.6% vs 35.1%, OR=0.70, 95%CI: 0.56-0.88). Long-term mortality was lower by 39% (28-day), 33% (90-day), and 27% (1-year) (all P<0.001). Multiple sensitivity analyses confirmed robustness (E-value: 2.00-2.21). Severely ill patients (SOFA≥8) had the greatest mortality reduction associated with beta-blocker use (55%). Prolonged hospital stay was consistent with a survival benefit rather than adverse effects.

Conclusions: Beta-blocker use is associated with reduced mortality and better long-term survival in SIMI patients, requiring prospective validation.

背景:脓毒症致心肌损伤(SIMI)是一种严重的并发症,死亡率高。β受体阻滞剂治疗SIMI仍有争议,缺乏大样本证据。目的:利用MIMIC-IV和eICU数据库评估β受体阻滞剂对SIMI患者死亡率的影响。方法:基于MIMIC-IV(2008-2022)和eICU(2014-2015)数据库的回顾性队列研究纳入了符合脓毒症-3.0标准且心肌肌钙蛋白升高的SIMI成人患者。主要暴露是在ICU住院期间使用β受体阻滞剂,主要结局是院内全因死亡率。采用1:1倾向评分匹配来平衡基线特征,并采用多重敏感性分析来验证结果的稳健性。结果:MIMIC-IV纳入2368例SIMI患者(1338例使用β受体阻滞剂);eICU纳入3805例患者(1030例使用β受体阻滞剂)。经过倾向评分匹配(MIMIC-IV: 837/组;eICU: 902/组),β受体阻滞剂的使用与院内死亡率的显著降低相关(MIMIC-IV: 19.7% vs 29.9%, OR=0.75, 95%CI: 0.60-0.94; eICU: 28.6% vs 35.1%, OR=0.70, 95%CI: 0.56-0.88)。长期死亡率降低39%(28天),33%(90天)和27%(1年)(所有p结论:β受体阻滞剂的使用与SIMI患者死亡率降低和更好的长期生存率相关,需要前瞻性验证。
{"title":"Association Between Beta-Blocker Use and Outcomes in Patients with Sepsis-Induced Myocardial Injury: An Analysis Based on MIMIC-IV and eICU Databases.","authors":"Han Wu, Linqian Jiang, Liman Qiu, Zhongbao Lin, Haiyun Liu, Xiankun Lin, Xincai Wang, Long Huang","doi":"10.1016/j.ijid.2026.108458","DOIUrl":"https://doi.org/10.1016/j.ijid.2026.108458","url":null,"abstract":"<p><strong>Background: </strong>Sepsis-induced myocardial injury (SIMI) is a severe complication with high mortality. Beta-blocker therapy in SIMI remains controversial, lacking large-sample evidence.</p><p><strong>Objective: </strong>To evaluate beta-blocker impact on mortality in SIMI patients using MIMIC-IV and eICU databases.</p><p><strong>Methods: </strong>A retrospective cohort study based on MIMIC-IV (2008-2022) and eICU (2014-2015) databases included adult SIMI patients meeting Sepsis-3.0 criteria with elevated cardiac troponin. The primary exposure was beta-blocker use during ICU stay, and the primary outcome was in-hospital all-cause mortality. 1:1 propensity score matching was used to balance baseline characteristics, with multiple sensitivity analyses to verify result robustness.</p><p><strong>Results: </strong>MIMIC-IV included 2,368 SIMI patients (1,338 using beta-blockers); eICU included 3,805 patients (1,030 using beta-blockers). After propensity score matching (MIMIC-IV: 837/group; eICU: 902/group), beta-blocker use was associated with a significant reduction in in-hospital mortality (MIMIC-IV: 19.7% vs 29.9%, OR=0.75, 95%CI: 0.60-0.94; eICU: 28.6% vs 35.1%, OR=0.70, 95%CI: 0.56-0.88). Long-term mortality was lower by 39% (28-day), 33% (90-day), and 27% (1-year) (all P<0.001). Multiple sensitivity analyses confirmed robustness (E-value: 2.00-2.21). Severely ill patients (SOFA≥8) had the greatest mortality reduction associated with beta-blocker use (55%). Prolonged hospital stay was consistent with a survival benefit rather than adverse effects.</p><p><strong>Conclusions: </strong>Beta-blocker use is associated with reduced mortality and better long-term survival in SIMI patients, requiring prospective validation.</p>","PeriodicalId":14006,"journal":{"name":"International Journal of Infectious Diseases","volume":" ","pages":"108458"},"PeriodicalIF":4.3,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146131370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Epidemiology and genomic features of MERS coronavirus in Africa: a systematic and meta-analysis review. 非洲中东呼吸综合征冠状病毒的流行病学和基因组特征:系统和荟萃分析综述
IF 4.3 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-02-03 DOI: 10.1016/j.ijid.2026.108456
Brian Ogoti, Victor Riitho, Johanna Wildemann, Nyamai Mutono, Marianne Mureithi, Prof Julius Oyugi, Jordi Rodon, Victor M Corman, Prof Christian Drosten, Prof S M Thumbi, Prof Marcel A Müller

Objective: We explored factors contributing to the low human MERS-CoV prevalence in Africa by assessing MERS-CoV epidemiological and genomic features.

Methods: We followed the PRISMA guidelines. We searched for articles on epidemiological and virological MERS-CoV characteristics in humans and camels in Africa until August 2025. We used a generalised linear mixed-effects model to calculate pooled proportions. We identified relevant polymorphisms in African MERS-CoV lineages compared with the prototypic EMC/2012 and contemporary Arabian MERS-CoV (clade B5).

Results: We included 53 articles, with 31 used in the meta-analysis. Kenya, Egypt, and Ethiopia contributed to 66.03% of all included studies. Pooled MERS-CoV RNA positivity in African dromedaries was 6.09%, with juveniles (15.29%) having a higher incidence than adults (4.51%). The pooled MERS-CoV seroprevalence was 73.67%, with adults (80.96%) higher than juveniles (36.02%). In human-focused studies, only nine PCR-confirmed MERS cases were reported, six travel-associated and three autochthonous cases, despite a pooled seroprevalence of 2.4%. Genomic analyses identified MERS-CoV clade C-specific polymorphisms in the Spike and accessory genes with putative phenotypic impact.

Conclusion: We found the highest MERS-CoV RNA positivity in young dromedaries. Elevated MERS-CoV seroprevalence in mainly asymptomatic camel-exposed humans suggests an underestimation of MERS-CoV infections in Africa. The ongoing MERS-CoV evolution emphasises the need for active genomic surveillance to monitor signatures of human adaptation.

目的:通过分析MERS-CoV流行病学特征和基因组特征,探讨非洲地区MERS-CoV低流行率的影响因素。方法:我们遵循PRISMA指南。我们检索了截至2025年8月关于非洲人类和骆驼的中东呼吸综合征冠状病毒流行病学和病毒学特征的文章。我们使用广义线性混合效应模型来计算合并比例。我们在非洲MERS-CoV谱系中发现了与原型EMC/2012和当代阿拉伯MERS-CoV(进化支B5)相比的相关多态性。结果:我们纳入了53篇文章,其中31篇用于meta分析。肯尼亚、埃及和埃塞俄比亚占所有纳入研究的66.03%。非洲单峰骆驼MERS-CoV RNA总阳性率为6.09%,其中幼马(15.29%)的发病率高于成年马(4.51%)。合并的MERS-CoV血清阳性率为73.67%,成人(80.96%)高于青少年(36.02%)。在以人类为重点的研究中,尽管总血清患病率为2.4%,但仅报告了9例经pcr确诊的MERS病例,6例与旅行相关,3例本地病例。基因组分析确定了MERS-CoV进化支c的穗和附属基因特异性多态性,并推测其具有表型影响。结论:年轻单峰骆驼MERS-CoV RNA阳性率最高。在主要无症状骆驼暴露人群中中东呼吸综合征冠状病毒血清阳性率升高表明对非洲中东呼吸综合征冠状病毒感染的低估。正在进行的中东呼吸综合征冠状病毒进化强调需要积极的基因组监测,以监测人类适应的特征。
{"title":"Epidemiology and genomic features of MERS coronavirus in Africa: a systematic and meta-analysis review.","authors":"Brian Ogoti, Victor Riitho, Johanna Wildemann, Nyamai Mutono, Marianne Mureithi, Prof Julius Oyugi, Jordi Rodon, Victor M Corman, Prof Christian Drosten, Prof S M Thumbi, Prof Marcel A Müller","doi":"10.1016/j.ijid.2026.108456","DOIUrl":"https://doi.org/10.1016/j.ijid.2026.108456","url":null,"abstract":"<p><strong>Objective: </strong>We explored factors contributing to the low human MERS-CoV prevalence in Africa by assessing MERS-CoV epidemiological and genomic features.</p><p><strong>Methods: </strong>We followed the PRISMA guidelines. We searched for articles on epidemiological and virological MERS-CoV characteristics in humans and camels in Africa until August 2025. We used a generalised linear mixed-effects model to calculate pooled proportions. We identified relevant polymorphisms in African MERS-CoV lineages compared with the prototypic EMC/2012 and contemporary Arabian MERS-CoV (clade B5).</p><p><strong>Results: </strong>We included 53 articles, with 31 used in the meta-analysis. Kenya, Egypt, and Ethiopia contributed to 66.03% of all included studies. Pooled MERS-CoV RNA positivity in African dromedaries was 6.09%, with juveniles (15.29%) having a higher incidence than adults (4.51%). The pooled MERS-CoV seroprevalence was 73.67%, with adults (80.96%) higher than juveniles (36.02%). In human-focused studies, only nine PCR-confirmed MERS cases were reported, six travel-associated and three autochthonous cases, despite a pooled seroprevalence of 2.4%. Genomic analyses identified MERS-CoV clade C-specific polymorphisms in the Spike and accessory genes with putative phenotypic impact.</p><p><strong>Conclusion: </strong>We found the highest MERS-CoV RNA positivity in young dromedaries. Elevated MERS-CoV seroprevalence in mainly asymptomatic camel-exposed humans suggests an underestimation of MERS-CoV infections in Africa. The ongoing MERS-CoV evolution emphasises the need for active genomic surveillance to monitor signatures of human adaptation.</p>","PeriodicalId":14006,"journal":{"name":"International Journal of Infectious Diseases","volume":" ","pages":"108456"},"PeriodicalIF":4.3,"publicationDate":"2026-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146125161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
International Journal of Infectious Diseases
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