首页 > 最新文献

International Journal of Microbiology最新文献

英文 中文
Prevalence of Extended-Spectrum Beta-Lactamase Producer Gram-Negative Rods and Associated Factors Among Patients With Wound Infection at University of Gondar Comprehensive Specialized Hospital, Northwest Ethiopia. 埃塞俄比亚西北部贡德尔大学综合专科医院伤口感染患者中产广谱β-内酰胺酶革兰氏阴性杆菌的流行率及相关因素。
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-11-11 eCollection Date: 2024-01-01 DOI: 10.1155/2024/1478975
Sara Tesfaye, Wudu Tafere, Wondwossen Abebe, Yitayih Wondimeneh
<p><p><b>Background:</b> Multidrug-resistant (MDR) bacteria have significantly affected the management and treatment of wound infections globally. Data on the prevalence of MDR bacterial profiles that cause wound infections in Ethiopia are scarce. Therefore, this study aimed to determine MDR as well as extended-spectrum beta-lactamase production profiles of Gram-negative rods that are difficult to treat with conventional antibiotics and that cause wound infections. <b>Objective:</b> The aim of the study was to determine the prevalence of extended-spectrum beta-lactamase producer Gram-negative rods and associated factors among patients with wound infection at University of Gondar Comprehensive Specialized Hospital, northwest Ethiopia. <b>Materials and Methods:</b> This hospital-based cross-sectional study was conducted at University of Gondar Comprehensive Specialized Hospital between May and July 2022. Convenience sampling was used to recruit 228 participants. Swabs from different wound types were inoculated onto the MacConkey agar and blood agar plates and incubated overnight at 37°C for 24 h. Biochemical tests were performed on isolated colonies for the identification of bacterial species based on their biochemical reaction. Antimicrobial susceptibility tests were performed using the disk diffusion technique as per the standard Kirby-Bauer method by using Muller-Hinton agar, and the zone of inhibition was interpreted as resistant, intermediate, and sensitive as per the recommendation of Clinical Laboratory Standard Institute. Isolates were tested against ceftriaxone, cefotaxime, and ceftazidime for extended-spectrum beta-lactamase screening using the Kirby-Bauer disk diffusion method, and combined disk tests were applied for phenotypic confirmatory test of extended-spectrum beta-lactamase producing isolates. <b>Result:</b> Of 228 study participants, 162 (71.1%) were culture-positive. Among culture-positive patients, 165 Gram-negative bacteria were recovered. The most common Gram-negative isolates were <i>Pseudomonas aeruginosa</i> (47; 28.5%), followed by <i>Escherichia coli</i> (43; 26.1%) and <i>Klebsiella pneumoniae</i> (24; 14.5%). The susceptibility rates of the isolate for imipenem and tobramycin were 97.0% and 73.2%, respectively, and the overall multidrug resistance rate was 80.5%. Extended-spectrum beta-lactamase producer bacteria were also isolated. Besides, all (100%) of extended-spectrum beta-lactamase producer bacteria were MDR. Living in rural areas (AOR 5.8; 95% CI [2.01-16.7]), hospital admission (AOR 3.95; 95% CI [1.13-13.83]), antibiotic use (AOR 2.83; 95% CI [1.03-7.72]), and comorbidity (AOR 0.25; 95% CI [0.07-0.59]) were significantly associated with wound infection. <b>Conclusions and Recommendations:</b> There was a high prevalence of Gram-negative bacterial isolates in this study<i>. Pseudomonas aeruginosa</i> (28.5%) was the predominant isolate. In addition, high rates of multidrug resistance were observed. The high lev
背景:耐多药(MDR)细菌严重影响了全球伤口感染的管理和治疗。有关埃塞俄比亚导致伤口感染的 MDR 细菌流行情况的数据很少。因此,本研究旨在确定传统抗生素难以治疗并导致伤口感染的革兰氏阴性杆菌的 MDR 和广谱β-内酰胺酶产生情况。研究目的本研究旨在确定埃塞俄比亚西北部贡德尔大学综合专科医院伤口感染患者中产扩展谱β-内酰胺酶革兰氏阴性杆菌的流行率及相关因素。材料与方法:这项基于医院的横断面研究于 2022 年 5 月至 7 月在贡德尔大学综合专科医院进行。研究采用便利抽样法招募了 228 名参与者。将不同类型伤口的拭子接种到麦康凯琼脂和血琼脂平板上,在 37°C 下培养 24 小时。按照标准的柯比-鲍尔法,使用穆勒-欣顿琼脂进行盘扩散技术的抗菌药敏感性测试,并根据临床实验室标准研究所的建议,将抑菌区解释为耐药、中等和敏感。采用 Kirby-Bauer 磁盘扩散法对头孢曲松、头孢他啶和头孢唑肟进行检测,以筛选广谱 beta-内酰胺酶,并采用联合磁盘检测法对产生广谱 beta-内酰胺酶的分离物进行表型确证检测。结果在 228 名研究参与者中,162 人(71.1%)为培养阳性。在培养阳性的患者中,有 165 个革兰氏阴性菌被检出。最常见的革兰氏阴性菌是铜绿假单胞菌(47;28.5%),其次是大肠埃希菌(43;26.1%)和肺炎克雷伯菌(24;14.5%)。分离菌株对亚胺培南和妥布霉素的敏感率分别为 97.0% 和 73.2%,对多种药物的总体耐药率为 80.5%。此外,还分离出产生广谱β-内酰胺酶的细菌。此外,所有(100%)广谱β-内酰胺酶产生菌都具有多重耐药性。居住在农村地区(AOR 5.8;95% CI [2.01-16.7])、入院(AOR 3.95;95% CI [1.13-13.83])、使用抗生素(AOR 2.83;95% CI [1.03-7.72])和合并症(AOR 0.25;95% CI [0.07-0.59])与伤口感染显著相关。结论与建议:本研究中革兰氏阴性细菌分离株的流行率很高。铜绿假单胞菌(28.5%)是最主要的分离菌。此外,还观察到多重耐药率很高。本研究中多重耐药率较高,这意味着应根据培养和药敏分析来确定治疗方法,以促进抗生素的合理使用,减少细菌对抗菌药产生耐药性。
{"title":"Prevalence of Extended-Spectrum Beta-Lactamase Producer Gram-Negative Rods and Associated Factors Among Patients With Wound Infection at University of Gondar Comprehensive Specialized Hospital, Northwest Ethiopia.","authors":"Sara Tesfaye, Wudu Tafere, Wondwossen Abebe, Yitayih Wondimeneh","doi":"10.1155/2024/1478975","DOIUrl":"10.1155/2024/1478975","url":null,"abstract":"&lt;p&gt;&lt;p&gt;&lt;b&gt;Background:&lt;/b&gt; Multidrug-resistant (MDR) bacteria have significantly affected the management and treatment of wound infections globally. Data on the prevalence of MDR bacterial profiles that cause wound infections in Ethiopia are scarce. Therefore, this study aimed to determine MDR as well as extended-spectrum beta-lactamase production profiles of Gram-negative rods that are difficult to treat with conventional antibiotics and that cause wound infections. &lt;b&gt;Objective:&lt;/b&gt; The aim of the study was to determine the prevalence of extended-spectrum beta-lactamase producer Gram-negative rods and associated factors among patients with wound infection at University of Gondar Comprehensive Specialized Hospital, northwest Ethiopia. &lt;b&gt;Materials and Methods:&lt;/b&gt; This hospital-based cross-sectional study was conducted at University of Gondar Comprehensive Specialized Hospital between May and July 2022. Convenience sampling was used to recruit 228 participants. Swabs from different wound types were inoculated onto the MacConkey agar and blood agar plates and incubated overnight at 37°C for 24 h. Biochemical tests were performed on isolated colonies for the identification of bacterial species based on their biochemical reaction. Antimicrobial susceptibility tests were performed using the disk diffusion technique as per the standard Kirby-Bauer method by using Muller-Hinton agar, and the zone of inhibition was interpreted as resistant, intermediate, and sensitive as per the recommendation of Clinical Laboratory Standard Institute. Isolates were tested against ceftriaxone, cefotaxime, and ceftazidime for extended-spectrum beta-lactamase screening using the Kirby-Bauer disk diffusion method, and combined disk tests were applied for phenotypic confirmatory test of extended-spectrum beta-lactamase producing isolates. &lt;b&gt;Result:&lt;/b&gt; Of 228 study participants, 162 (71.1%) were culture-positive. Among culture-positive patients, 165 Gram-negative bacteria were recovered. The most common Gram-negative isolates were &lt;i&gt;Pseudomonas aeruginosa&lt;/i&gt; (47; 28.5%), followed by &lt;i&gt;Escherichia coli&lt;/i&gt; (43; 26.1%) and &lt;i&gt;Klebsiella pneumoniae&lt;/i&gt; (24; 14.5%). The susceptibility rates of the isolate for imipenem and tobramycin were 97.0% and 73.2%, respectively, and the overall multidrug resistance rate was 80.5%. Extended-spectrum beta-lactamase producer bacteria were also isolated. Besides, all (100%) of extended-spectrum beta-lactamase producer bacteria were MDR. Living in rural areas (AOR 5.8; 95% CI [2.01-16.7]), hospital admission (AOR 3.95; 95% CI [1.13-13.83]), antibiotic use (AOR 2.83; 95% CI [1.03-7.72]), and comorbidity (AOR 0.25; 95% CI [0.07-0.59]) were significantly associated with wound infection. &lt;b&gt;Conclusions and Recommendations:&lt;/b&gt; There was a high prevalence of Gram-negative bacterial isolates in this study&lt;i&gt;. Pseudomonas aeruginosa&lt;/i&gt; (28.5%) was the predominant isolate. In addition, high rates of multidrug resistance were observed. The high lev","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"1478975"},"PeriodicalIF":2.8,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11573444/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142668077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacteriuria Among Type 2 Diabetes Mellitus Patients Attending Ejisu Government Hospital in the Ashanti Region, Ghana. 加纳阿散蒂地区埃吉苏政府医院 2 型糖尿病患者的细菌尿。
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-30 eCollection Date: 2024-01-01 DOI: 10.1155/2024/1120083
Constancia S Dansoa, Nicholas Y Anaba, Richard T Zangine, Christine Kodji, Frank A Bonsu, Gideon O Abbiw, Isaac Acheampong, Solomon Wireko, Seth A Domfeh

Type 2 diabetes mellitus (T2DM) patients are at increased risk of infections, such as malignant otitis externa and rhinocerebral mucormycosis, with the urinary tract being the most affected (for example, emphysematous pyelonephritis commonly caused by Escherichia coli). Hence, this study assessed the prevalence of bacteriuria and antibiogram patterns of bacteria isolates among T2DM patients visiting the Ejisu Government Hospital in the Ashanti Region, Ghana. In this cross-sectional study, 58 patients visiting the hospital for routine healthcare were conveniently recruited after obtaining informed consent. Data on sociodemographic characteristics and medical history were obtained using pretested structured questionnaires. Mid-stream urine was collected for bacteria isolation and identification using standard bacterial culture and biochemical tests. Bacteria cultures ≥ 105 CFU/mL were considered significant bacteriuria. The antibiotic sensitivity patterns of the bacteria isolates were evaluated using the Kirby-Bauer disc diffusion method. Bacteriuria was recorded among 15.5% (9/58) of the patients, mainly those with no previous history (77.8%) and no symptoms (55.6%) of urinary tract infections (UTIs). E. coli (55.6%) and Klebsiella spp. (44.6%) were primarily isolated from the T2DM patients. All the bacteria isolates (E. coli and Klebsiella spp.) demonstrated the highest resistance to co-trimoxazole and tetracycline (55.6%) and a complete susceptibility to amikacin and levofloxacin (100%). However, 60% of the E. coli isolates and 25% of the Klebsiella isolates were multidrug resistant (MDR; resistant to at least one antibiotic agent in three or more antimicrobial categories). The study shows that T2DM patients have bacteria in their urine which are resistant to most common antibiotics, even among those with no history of UTIs; hence, routine bacterial culture and antibiotic sensitivity testing among T2DM patients is recommended for better patient management to reduce the co-morbidities of UTIs.

2 型糖尿病(T2DM)患者发生感染(如恶性中耳炎和鼻脑粘液瘤病)的风险增加,其中泌尿道感染的风险最大(例如,由大肠杆菌引起的气肿性肾盂肾炎)。因此,本研究评估了在加纳阿散蒂地区埃吉苏政府医院就诊的 T2DM 患者中细菌尿的发病率和细菌分离的抗生素图谱模式。在这项横断面研究中,在征得知情同意后,方便地招募了 58 名到医院接受常规医疗保健的患者。研究人员通过预先测试的结构式问卷获得了有关社会人口学特征和病史的数据。收集中段尿液,采用标准细菌培养和生化试验进行细菌分离和鉴定。细菌培养值≥ 105 CFU/mL为明显菌尿。细菌分离物的抗生素敏感性模式采用柯比鲍尔盘扩散法进行评估。15.5%(9/58)的患者有细菌尿,其中主要是既往无尿路感染病史(77.8%)和无尿路感染症状(55.6%)的患者。大肠杆菌(55.6%)和克雷伯氏菌(44.6%)主要是从 T2DM 患者中分离出来的。所有分离出的细菌(大肠杆菌和克雷伯菌属)对联合三唑和四环素的耐药性最高(55.6%),对阿米卡星和左氧氟沙星的敏感性为 100%。然而,60%的大肠杆菌和 25% 的克雷伯氏菌对多种药物具有耐药性(MDR;对三种或三种以上抗菌药物中的至少一种抗生素具有耐药性)。这项研究表明,T2DM 患者尿液中的细菌对大多数常见抗生素具有耐药性,即使是那些没有尿毒症病史的患者也不例外;因此,建议对 T2DM 患者进行常规细菌培养和抗生素敏感性检测,以便更好地管理患者,减少尿毒症的并发症。
{"title":"Bacteriuria Among Type 2 Diabetes Mellitus Patients Attending Ejisu Government Hospital in the Ashanti Region, Ghana.","authors":"Constancia S Dansoa, Nicholas Y Anaba, Richard T Zangine, Christine Kodji, Frank A Bonsu, Gideon O Abbiw, Isaac Acheampong, Solomon Wireko, Seth A Domfeh","doi":"10.1155/2024/1120083","DOIUrl":"https://doi.org/10.1155/2024/1120083","url":null,"abstract":"<p><p>Type 2 diabetes mellitus (T2DM) patients are at increased risk of infections, such as malignant otitis externa and rhinocerebral mucormycosis, with the urinary tract being the most affected (for example, emphysematous pyelonephritis commonly caused by <i>Escherichia coli</i>). Hence, this study assessed the prevalence of bacteriuria and antibiogram patterns of bacteria isolates among T2DM patients visiting the Ejisu Government Hospital in the Ashanti Region, Ghana. In this cross-sectional study, 58 patients visiting the hospital for routine healthcare were conveniently recruited after obtaining informed consent. Data on sociodemographic characteristics and medical history were obtained using pretested structured questionnaires. Mid-stream urine was collected for bacteria isolation and identification using standard bacterial culture and biochemical tests. Bacteria cultures ≥ 10<sup>5</sup> CFU/mL were considered significant bacteriuria. The antibiotic sensitivity patterns of the bacteria isolates were evaluated using the Kirby-Bauer disc diffusion method. Bacteriuria was recorded among 15.5% (9/58) of the patients, mainly those with no previous history (77.8%) and no symptoms (55.6%) of urinary tract infections (UTIs). <i>E. coli</i> (55.6%) and <i>Klebsiella</i> spp. (44.6%) were primarily isolated from the T2DM patients. All the bacteria isolates (<i>E. coli</i> and <i>Klebsiella</i> spp.) demonstrated the highest resistance to co-trimoxazole and tetracycline (55.6%) and a complete susceptibility to amikacin and levofloxacin (100%). However, 60% of the <i>E. coli</i> isolates and 25% of the <i>Klebsiella</i> isolates were multidrug resistant (MDR; resistant to at least one antibiotic agent in three or more antimicrobial categories). The study shows that T2DM patients have bacteria in their urine which are resistant to most common antibiotics, even among those with no history of UTIs; hence, routine bacterial culture and antibiotic sensitivity testing among T2DM patients is recommended for better patient management to reduce the co-morbidities of UTIs.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"1120083"},"PeriodicalIF":2.8,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11540879/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142604518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Potential Target Metabolites From Gut Microbiota Against Hepatocellular Carcinoma: A Network Pharmacology and Molecular Docking Study. 肠道微生物群中抗肝细胞癌的潜在靶代谢物:网络药理学和分子对接研究
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-29 eCollection Date: 2024-01-01 DOI: 10.1155/2024/4286228
Sehar Aslam, Muhammad Qasim, Fatima Noor, Muhammad Shahid, Usman Ali Ashfaq, Samman Munir, Helal F Al-Harthi, Mutaib M Mashraqi, Umair Waqas, Mohsin Khurshid

Hepatocellular carcinoma (HCC) is a leading cause of cancer-related deaths worldwide, posing significant challenges and economic burdens on healthcare systems. Gut microbiota metabolites have shown promise in cancer treatment, but the specific active metabolites and their key targets remain unclear. This study employed a network pharmacology-based approach to identify potent metabolites of gut microbiota and their key targets. Active metabolites produced by gut microbiota were retrieved using the database gutMGene, and targets associated with these metabolites were identified using the Swiss Target Prediction tool. HCC-related targets were obtained from the GeneCards database, and overlapping targets were selected through a Venn diagram tool. An integrated metabolites-target-pathway network was analyzed to identify active inhibitors against HCC, including p-cresol glucuronide, secoisolariciresinol, glycocholic acid, enterodiol, and citric acid. Molecular docking tests were performed to validate the findings and assess the binding affinity of the metabolites with their target proteins. The study identified AKT1, EGFR, ALB, and TNF genes as potential therapeutic targets against hepatic cancer. The metabolites, p-cresol glucuronide, secoisolariciresinol, glycocholic acid, enterodiol, and citric acid, exhibited significant binding affinity with their respective target proteins. The study also revealed multiple signaling pathways and biological processes associated with the metabolites, demonstrating their preventive effect against HCC. This research utilizes a network pharmacology-based approach to identify potent metabolites of gut microbiota and their key targets for the treatment of HCC. The findings were validated through molecular docking tests, providing a foundation for future studies on anti-HCC metabolites and their mechanisms of action. Furthermore, this study offers insights into the development of novel anti-HCC drugs utilizing gut microbiota metabolites.

肝细胞癌(HCC)是全球癌症相关死亡的主要原因,给医疗保健系统带来了巨大的挑战和经济负担。肠道微生物群代谢物已显示出治疗癌症的前景,但具体的活性代谢物及其关键靶点仍不清楚。本研究采用了一种基于网络药理学的方法来鉴定肠道微生物群的有效代谢物及其关键靶点。利用数据库 gutMGene 检索了肠道微生物群产生的活性代谢物,并利用瑞士靶点预测工具确定了与这些代谢物相关的靶点。与 HCC 相关的靶点来自 GeneCards 数据库,并通过维恩图工具筛选出重叠的靶点。通过分析代谢物-靶点-途径综合网络,确定了针对 HCC 的活性抑制剂,包括对甲酚葡萄糖醛酸苷、仲异落叶松脂醇、甘油胆酸、肠二醇和柠檬酸。研究人员进行了分子对接测试,以验证研究结果并评估代谢物与其靶蛋白的结合亲和力。研究发现 AKT1、表皮生长因子受体、ALB 和 TNF 基因是肝癌的潜在治疗靶点。代谢物对甲酚葡萄糖醛酸内酯、仲异落叶松脂醇、甘油胆酸、肠二醇和柠檬酸与各自的靶蛋白具有显著的结合亲和力。研究还揭示了与这些代谢物相关的多种信号通路和生物过程,证明了它们对 HCC 的预防作用。这项研究利用基于网络药理学的方法来鉴定肠道微生物群的强效代谢物及其治疗 HCC 的关键靶点。这些发现通过分子对接测试得到了验证,为今后研究抗 HCC 代谢物及其作用机制奠定了基础。此外,这项研究还为利用肠道微生物群代谢物开发新型抗 HCC 药物提供了启示。
{"title":"Potential Target Metabolites From Gut Microbiota Against Hepatocellular Carcinoma: A Network Pharmacology and Molecular Docking Study.","authors":"Sehar Aslam, Muhammad Qasim, Fatima Noor, Muhammad Shahid, Usman Ali Ashfaq, Samman Munir, Helal F Al-Harthi, Mutaib M Mashraqi, Umair Waqas, Mohsin Khurshid","doi":"10.1155/2024/4286228","DOIUrl":"10.1155/2024/4286228","url":null,"abstract":"<p><p>Hepatocellular carcinoma (HCC) is a leading cause of cancer-related deaths worldwide, posing significant challenges and economic burdens on healthcare systems. Gut microbiota metabolites have shown promise in cancer treatment, but the specific active metabolites and their key targets remain unclear. This study employed a network pharmacology-based approach to identify potent metabolites of gut microbiota and their key targets. Active metabolites produced by gut microbiota were retrieved using the database gutMGene, and targets associated with these metabolites were identified using the Swiss Target Prediction tool. HCC-related targets were obtained from the GeneCards database, and overlapping targets were selected through a Venn diagram tool. An integrated metabolites-target-pathway network was analyzed to identify active inhibitors against HCC, including <i>p</i>-cresol glucuronide, secoisolariciresinol, glycocholic acid, enterodiol, and citric acid. Molecular docking tests were performed to validate the findings and assess the binding affinity of the metabolites with their target proteins. The study identified AKT1, EGFR, ALB, and TNF genes as potential therapeutic targets against hepatic cancer. The metabolites, <i>p</i>-cresol glucuronide, secoisolariciresinol, glycocholic acid, enterodiol, and citric acid, exhibited significant binding affinity with their respective target proteins. The study also revealed multiple signaling pathways and biological processes associated with the metabolites, demonstrating their preventive effect against HCC. This research utilizes a network pharmacology-based approach to identify potent metabolites of gut microbiota and their key targets for the treatment of HCC. The findings were validated through molecular docking tests, providing a foundation for future studies on anti-HCC metabolites and their mechanisms of action. Furthermore, this study offers insights into the development of novel anti-HCC drugs utilizing gut microbiota metabolites.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"4286228"},"PeriodicalIF":2.8,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11537736/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142582956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Penicillium citrinum CFAM 521 Isolated From the Amazon Region: A Novel Source of a Fibrinolytic Enzyme. 从亚马逊地区分离的柠檬青霉 CFAM 521:纤溶酶的新来源。
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-29 eCollection Date: 2024-01-01 DOI: 10.1155/2024/5306083
Thayana Cruz de Souza, Marcos Gustavo Araujo Schwarz, Daniela Marinho da Silva, Carolina Rabelo Maia, Cláudia Patrícia Mendes de Araújo, Antônio Alcirley da Silva Balieiro, Luiz Antonio de Oliveira, Wim Maurits Sylvain Degrave, Ormezinda Celeste Cristo Fernandes, Leila Mendonça-Lima

Fibrinolytic agents are essential in treating thrombosis, playing a critical role in improving survival rates in cardiovascular diseases. Microbial fibrinolytic proteases have emerged as promising alternatives due to their affordability, specificity, lower toxicity, and reduced side effects. Consequently, the search for microorganisms capable of producing these enzymes has gained significant economic importance in the pharmaceutical industry. This study reports and characterizes a novel fibrinolytic enzyme produced by Penicillium citrinum CFAM 521, a strain isolated from the Amazon region. The enzyme was purified using a polyethylene glycol (PEG)-phosphate salt aqueous two-phase system (ATPS). The effects of PEG molecular weight, PEG concentration, and phosphate concentration on the protease partition coefficient (K) were evaluated through a 22 full factorial design. The enzyme exhibited both fibrinolytic and fibrinogenolytic activities. After partitioning in a two-phase system with 10% (w/w) PEG and 15% (w/w) sodium phosphate, the fibrinolytic proteases were predominantly retained in the salt-rich bottom phase (K = 0.33). The enzyme has a molecular weight of 34 kDa, with optimal pH and temperature at 9°C and 37°C, respectively. Inhibitory analysis confirmed that it is a serine protease, and its activity was enhanced by the addition of Mn2+. Notably, the enzyme exhibited no hemolytic activity. Therefore, P. citrinum CFAM 521 represents a novel source of fibrinolytic enzymes, highlighting its potential as an alternative for the development of thrombolytic agents.

纤溶药物是治疗血栓形成的基本药物,在提高心血管疾病的存活率方面发挥着至关重要的作用。微生物纤溶蛋白酶因其价格低廉、特异性强、毒性低和副作用小等优点,已成为有前途的替代品。因此,寻找能够生产这些酶的微生物在制药业具有重要的经济意义。本研究报告了从亚马逊地区分离出的柠檬青霉 CFAM 521 产生的一种新型纤维蛋白溶解酶,并描述了其特性。该酶采用聚乙二醇(PEG)-磷酸盐水双相体系(ATPS)进行纯化。通过 22 个全因子设计,评估了 PEG 分子量、PEG 浓度和磷酸盐浓度对蛋白酶分配系数(K)的影响。该酶具有纤维蛋白溶解和纤维蛋白原溶解两种活性。在含有 10%(重量比)PEG 和 15%(重量比)磷酸钠的两相体系中分配后,纤溶蛋白酶主要保留在富含盐分的底相(K = 0.33)。该酶的分子量为 34 kDa,最佳 pH 值和温度分别为 9°C 和 37°C。抑制分析证实它是一种丝氨酸蛋白酶,加入 Mn2+ 可增强其活性。值得注意的是,该酶没有溶血活性。因此,P. citrinum CFAM 521 代表了一种新的纤维蛋白溶解酶来源,凸显了其作为开发血栓溶解剂替代品的潜力。
{"title":"<i>Penicillium citrinum</i> CFAM 521 Isolated From the Amazon Region: A Novel Source of a Fibrinolytic Enzyme.","authors":"Thayana Cruz de Souza, Marcos Gustavo Araujo Schwarz, Daniela Marinho da Silva, Carolina Rabelo Maia, Cláudia Patrícia Mendes de Araújo, Antônio Alcirley da Silva Balieiro, Luiz Antonio de Oliveira, Wim Maurits Sylvain Degrave, Ormezinda Celeste Cristo Fernandes, Leila Mendonça-Lima","doi":"10.1155/2024/5306083","DOIUrl":"10.1155/2024/5306083","url":null,"abstract":"<p><p>Fibrinolytic agents are essential in treating thrombosis, playing a critical role in improving survival rates in cardiovascular diseases. Microbial fibrinolytic proteases have emerged as promising alternatives due to their affordability, specificity, lower toxicity, and reduced side effects. Consequently, the search for microorganisms capable of producing these enzymes has gained significant economic importance in the pharmaceutical industry. This study reports and characterizes a novel fibrinolytic enzyme produced by <i>Penicillium citrinum</i> CFAM 521, a strain isolated from the Amazon region. The enzyme was purified using a polyethylene glycol (PEG)-phosphate salt aqueous two-phase system (ATPS). The effects of PEG molecular weight, PEG concentration, and phosphate concentration on the protease partition coefficient (K) were evaluated through a 2<sup>2</sup> full factorial design. The enzyme exhibited both fibrinolytic and fibrinogenolytic activities. After partitioning in a two-phase system with 10% (w/w) PEG and 15% (w/w) sodium phosphate, the fibrinolytic proteases were predominantly retained in the salt-rich bottom phase (<i>K</i> = 0.33). The enzyme has a molecular weight of 34 kDa, with optimal pH and temperature at 9°C and 37°C, respectively. Inhibitory analysis confirmed that it is a serine protease, and its activity was enhanced by the addition of Mn<sup>2+</sup>. Notably, the enzyme exhibited no hemolytic activity. Therefore, <i>P. citrinum</i> CFAM 521 represents a novel source of fibrinolytic enzymes, highlighting its potential as an alternative for the development of thrombolytic agents.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"5306083"},"PeriodicalIF":2.8,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11537737/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142582952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive Genome Analysis of Colistin-Only-Sensitive KPC-2 and NDM1-1-Coproducing Klebsiella pneumoniae ST11 and Acinetobacter baumannii ST2 From a Critically Ill Patient With COVID-19 in Saudi Arabia: Whole Genome Sequencing (WGS) of K. pneumoniae ST11 and A. baumannii ST2. 沙特阿拉伯 COVID-19 重症患者中对秋水仙碱敏感的 KPC-2 和 NDM1-1 产菌肺炎克雷伯菌 ST11 和鲍曼不动杆菌 ST2 的全基因组分析:肺炎克雷伯菌 ST11 和鲍曼不动杆菌 ST2 的全基因组测序 (WGS)。
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-29 eCollection Date: 2024-01-01 DOI: 10.1155/2024/9233075
Ibrahim A Al-Zahrani, Thamer M Brek

The COVID-19 pandemic has intensified the issue of multidrug-resistant (MDR) infections, particularly in intensive care units (ICUs). This study documents the first known case of coinfection with two extensively drug-resistant (XDR) bacterial isolates in a critically ill patient with COVID-19 in Saudi Arabia. Both XDR isolates were recovered from blood and were resistant to all tested antimicrobial agents except colistin. Whole genome sequencing (WGS) revealed that the K. pneumoniae isolate KP-JZ107 had sequence type 11 (ST11) and core genome MLST (cgMLST 304742), while the A. baumannii isolate AB-JZ67 had ST2 and cgMLST 785. KP-JZ107 was found to possess the virulence plasmid KpVP-type-1, carbapenemase genes bla NDM and bla KPC , and numerous antimicrobial-resistant genes (ARGs). The AB-JZ67 isolate had several biofilm-related genes, including biofilm-associated protein (BAP), csuE, and pgaB, and multiple ARGs, including bla ADC-25, bla OXA-23, and bla OXA-66. Our findings suggest that the coexistence of KP-JZ107 and AB-JZ67 isolates may indicate their widespread presence in ICUs, requiring comprehensive surveillance studies across all hospitals.

COVID-19 大流行加剧了耐多药(MDR)感染问题,尤其是在重症监护病房(ICU)。本研究记录了已知的首例沙特阿拉伯 COVID-19 重症患者同时感染两种广泛耐药(XDR)细菌分离株的病例。这两种 XDR 分离物都是从血液中回收的,对除可乐定以外的所有测试抗菌药均有耐药性。全基因组测序(WGS)显示,肺炎克氏菌分离株 KP-JZ107 的序列类型为 11(ST11),核心基因组 MLST(cgMLST 304742),而鲍曼不动杆菌分离株 AB-JZ67 的序列类型为 ST2,核心基因组 MLST 为 785。研究发现,KP-JZ107具有毒力质粒KpVP-type-1、碳青霉烯酶基因bla NDM和bla KPC以及大量抗菌基因(ARGs)。AB-JZ67 分离物有多个生物膜相关基因,包括生物膜相关蛋白(BAP)、csuE 和 pgaB,以及多个 ARGs,包括 bla ADC-25、bla OXA-23 和 bla OXA-66。我们的研究结果表明,KP-JZ107 和 AB-JZ67 分离物的共存可能表明它们广泛存在于重症监护病房,因此需要在所有医院开展全面的监测研究。
{"title":"Comprehensive Genome Analysis of Colistin-Only-Sensitive KPC-2 and NDM1-1-Coproducing <i>Klebsiella pneumoniae</i> ST11 and <i>Acinetobacter baumannii</i> ST2 From a Critically Ill Patient With COVID-19 in Saudi Arabia: Whole Genome Sequencing (WGS) of <i>K. pneumoniae</i> ST11 and <i>A. baumannii</i> ST2.","authors":"Ibrahim A Al-Zahrani, Thamer M Brek","doi":"10.1155/2024/9233075","DOIUrl":"10.1155/2024/9233075","url":null,"abstract":"<p><p>The COVID-19 pandemic has intensified the issue of multidrug-resistant (MDR) infections, particularly in intensive care units (ICUs). This study documents the first known case of coinfection with two extensively drug-resistant (XDR) bacterial isolates in a critically ill patient with COVID-19 in Saudi Arabia. Both XDR isolates were recovered from blood and were resistant to all tested antimicrobial agents except colistin. Whole genome sequencing (WGS) revealed that the <i>K. pneumoniae</i> isolate KP-JZ107 had sequence type 11 (ST11) and core genome MLST (cgMLST 304742), while the <i>A. baumannii</i> isolate AB-JZ67 had ST2 and cgMLST 785. KP-JZ107 was found to possess the virulence plasmid KpVP-type-1, carbapenemase genes <i>bla</i> <sub><i>NDM</i></sub> and <i>bla</i> <sub><i>KPC</i></sub> , and numerous antimicrobial-resistant genes (ARGs). The AB-JZ67 isolate had several biofilm-related genes, including biofilm-associated protein (BAP), csuE, and pgaB, and multiple ARGs, including <i>bla</i> <sub><i>ADC</i>-25</sub>, <i>bla</i> <sub><i>OXA</i>-23</sub>, and <i>bla</i> <sub><i>OXA</i>-66</sub>. Our findings suggest that the coexistence of KP-JZ107 and AB-JZ67 isolates may indicate their widespread presence in ICUs, requiring comprehensive surveillance studies across all hospitals.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"9233075"},"PeriodicalIF":2.8,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11537734/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142582955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Determination of Biodegradation Potential of Aspergillus niger, Candida albicans, and Acremonium sclerotigenum on Polyethylene, Polyethylene Terephthalate, and Polystyrene Microplastics. 测定黑曲霉、白念珠菌和硬菌对聚乙烯、聚对苯二甲酸乙二酯和聚苯乙烯微塑料的生物降解潜力。
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-28 eCollection Date: 2024-01-01 DOI: 10.1155/2024/7682762
Ayesha Safdar, Fatima Ismail, Hafsa Iftikhar, Abdul Majid Khokhar, Atika Javed, Muhammad Imran, Bushra Safdar

Plastics are used widely in almost every field of life, but their synthetic and persistent nature makes them harmful for the environment. The aim of this research was to evaluate the degradation abilities of Aspergillus niger, Candida albicans, and Acremonium sclerotigenum on microplastics (MPs). MP pieces of 4 ± 1 mm, including polyethylene, polyethylene terephthalate, and polystyrene, were incubated with fungal inoculums for 30 days. The degradation of treated MPs was determined by biofilm formation, weight loss, scanning electron microscopy (SEM), and Fourier transform analyses. The results indicated that the polyethylene MPs treated with Aspergillus niger exhibited the highest level of biofilm formation (optical density 1.595) and percentage weight loss (16%). In the case of polyethylene terephthalate and polystyrene MPs, Acremonium sclerotigenum and co-culture showed weight loss of 6% and 10%, respectively. Candida albicans was observed to be the least effective in biodegradation analyses. SEM observation revealed the surface modifications as holes, pits, cracks, and increased roughness in treated MPs. Fourier transform infrared (FTIR) spectroscopy showed that the chemical structure of each polymer exhibited some variations. The study concluded that the fungal strains play an important role in the biodegradation of plastics and can be utilized to mitigate environmental pollution.

塑料几乎广泛应用于生活的各个领域,但其合成性和持久性使其对环境有害。本研究旨在评估黑曲霉、白念珠菌和硬菌对微塑料(MPs)的降解能力。将 4 ± 1 毫米的微塑料碎片(包括聚乙烯、聚对苯二甲酸乙二酯和聚苯乙烯)与真菌接种体一起培养 30 天。通过生物膜的形成、重量损失、扫描电子显微镜(SEM)和傅立叶变换分析确定了经处理的 MP 的降解情况。结果表明,用黑曲霉处理的聚乙烯 MP 的生物膜形成水平(光密度 1.595)和失重百分比(16%)最高。在聚对苯二甲酸乙二醇酯和聚苯乙烯 MPs 中,菌丝和共培养菌的重量损失分别为 6% 和 10%。在生物降解分析中,白色念珠菌的降解效果最差。扫描电子显微镜(SEM)观察发现,经处理的 MPs 表面出现了孔洞、凹坑、裂缝和粗糙度增加等变化。傅立叶变换红外光谱(FTIR)显示,每种聚合物的化学结构都有一些变化。研究认为,真菌菌株在塑料的生物降解过程中发挥着重要作用,可用于减轻环境污染。
{"title":"Determination of Biodegradation Potential of <i>Aspergillus niger</i>, <i>Candida albicans</i>, and <i>Acremonium sclerotigenum</i> on Polyethylene, Polyethylene Terephthalate, and Polystyrene Microplastics.","authors":"Ayesha Safdar, Fatima Ismail, Hafsa Iftikhar, Abdul Majid Khokhar, Atika Javed, Muhammad Imran, Bushra Safdar","doi":"10.1155/2024/7682762","DOIUrl":"10.1155/2024/7682762","url":null,"abstract":"<p><p>Plastics are used widely in almost every field of life, but their synthetic and persistent nature makes them harmful for the environment. The aim of this research was to evaluate the degradation abilities of <i>Aspergillus niger</i>, <i>Candida albicans</i>, and <i>Acremonium sclerotigenum</i> on microplastics (MPs). MP pieces of 4 ± 1 mm, including polyethylene, polyethylene terephthalate, and polystyrene, were incubated with fungal inoculums for 30 days. The degradation of treated MPs was determined by biofilm formation, weight loss, scanning electron microscopy (SEM), and Fourier transform analyses. The results indicated that the polyethylene MPs treated with <i>Aspergillus niger</i> exhibited the highest level of biofilm formation (optical density 1.595) and percentage weight loss (16%). In the case of polyethylene terephthalate and polystyrene MPs, <i>Acremonium sclerotigenum</i> and co-culture showed weight loss of 6% and 10%, respectively. <i>Candida albicans</i> was observed to be the least effective in biodegradation analyses. SEM observation revealed the surface modifications as holes, pits, cracks, and increased roughness in treated MPs. Fourier transform infrared (FTIR) spectroscopy showed that the chemical structure of each polymer exhibited some variations. The study concluded that the fungal strains play an important role in the biodegradation of plastics and can be utilized to mitigate environmental pollution.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"7682762"},"PeriodicalIF":2.8,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11535424/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142580793","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Untargeted Metabolomics to Investigate the Influence of Epigenetic Modifiers on the Metabolism of Fusarium verticillioides. 通过非靶向代谢组学研究表观遗传修饰因子对轮纹镰刀菌代谢的影响
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-28 eCollection Date: 2024-01-01 DOI: 10.1155/2024/1763495
E Groppi, A Gadea, C Monge, V Cristofoli, M Vansteelandt, M Haddad

Toxigenic fungi are capable of producing toxic metabolites, called mycotoxins. But the presence of silent and lowly expressed genes represents the main challenge for the discovery of novel mycotoxins, especially their lesser-known forms, commonly referred to as "emerging mycotoxins." Epigenetic modifiers (EMs) are compounds that are able to alter the production of metabolites through the induction of silent biosynthetic pathways leading to an enhanced chemical diversity. The aim of this study was to assess the effects of different chemical modulators on the metabolic profiles of the well-known toxigenic fungal species, Fusarium verticillioides. Four EMs, 5-azacytidine, sodium butyrate, nicotinamide (NIC), and sodium valproate (SV), were used. Following their addition to Fusarium verticillioides cultures, the metabolic profiles were analyzed by using UHPLC-HRMS/MS under targeted and untargeted metabolomics approaches. Metabolites were putatively annotated through the use of MS-DIAL and MS-FINDER. Our results show that the treatment with SV induced the most important alteration of the secondary metabolic profile of F. verticillioides, by promoting the expression of cryptic genes. Among the 50 most discriminating metabolites across five culture conditions, 12 were fusarins or fusarin analogs. In contrast, SB and NIC had little impact on these metabolites. The study highlights SV's ability to alter gene expression by inhibiting DNA deacetylation in fungal strains. This research could have significant implications for agriculture and food industry, especially in regions facing major mycotoxin challenges.

致毒真菌能够产生有毒的代谢产物,即霉菌毒素。但是,沉默基因和低表达基因的存在是发现新型霉菌毒素的主要挑战,特别是其鲜为人知的形式,通常被称为 "新兴霉菌毒素"。表观遗传修饰剂(EMs)是一种化合物,能够通过诱导沉默的生物合成途径来改变代谢物的产生,从而提高化学多样性。本研究的目的是评估不同化学调节剂对著名致毒真菌疣孢镰刀菌代谢谱的影响。本研究使用了四种 EMs:5-氮杂胞苷、丁酸钠、烟酰胺(NIC)和丙戊酸钠(SV)。将它们加入到轮枝镰孢菌培养物中后,在靶向和非靶向代谢组学方法下使用 UHPLC-HRMS/MS 对代谢谱进行了分析。通过使用 MS-DIAL 和 MS-FINDER 对代谢物进行了标注。我们的研究结果表明,SV 通过促进隐性基因的表达,诱导了 F. verticillioides 次级代谢谱的最重要改变。在五种培养条件下最具鉴别性的 50 种代谢物中,有 12 种是镰刀菌素或镰刀菌素类似物。相比之下,SB 和 NIC 对这些代谢物的影响很小。这项研究强调了 SV 通过抑制真菌菌株的 DNA 去乙酰化而改变基因表达的能力。这项研究可能会对农业和食品工业产生重大影响,尤其是在面临重大霉菌毒素挑战的地区。
{"title":"Untargeted Metabolomics to Investigate the Influence of Epigenetic Modifiers on the Metabolism of <i>Fusarium verticillioides</i>.","authors":"E Groppi, A Gadea, C Monge, V Cristofoli, M Vansteelandt, M Haddad","doi":"10.1155/2024/1763495","DOIUrl":"10.1155/2024/1763495","url":null,"abstract":"<p><p>Toxigenic fungi are capable of producing toxic metabolites, called mycotoxins. But the presence of silent and lowly expressed genes represents the main challenge for the discovery of novel mycotoxins, especially their lesser-known forms, commonly referred to as \"emerging mycotoxins.\" Epigenetic modifiers (EMs) are compounds that are able to alter the production of metabolites through the induction of silent biosynthetic pathways leading to an enhanced chemical diversity. The aim of this study was to assess the effects of different chemical modulators on the metabolic profiles of the well-known toxigenic fungal species, <i>Fusarium verticillioides</i>. Four EMs, 5-azacytidine, sodium butyrate, nicotinamide (NIC), and sodium valproate (SV), were used. Following their addition to <i>Fusarium verticillioides</i> cultures, the metabolic profiles were analyzed by using UHPLC-HRMS/MS under targeted and untargeted metabolomics approaches. Metabolites were putatively annotated through the use of MS-DIAL and MS-FINDER. Our results show that the treatment with SV induced the most important alteration of the secondary metabolic profile of <i>F. verticillioides</i>, by promoting the expression of cryptic genes. Among the 50 most discriminating metabolites across five culture conditions, 12 were fusarins or fusarin analogs. In contrast, SB and NIC had little impact on these metabolites. The study highlights SV's ability to alter gene expression by inhibiting DNA deacetylation in fungal strains. This research could have significant implications for agriculture and food industry, especially in regions facing major mycotoxin challenges.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"1763495"},"PeriodicalIF":2.8,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11535422/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142582958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Screening of Diabetes-Associated Autoantigens and Serum Antibody Profiles Using a Phage Display System. 利用噬菌体展示系统筛查糖尿病相关自身抗原和血清抗体谱
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-24 eCollection Date: 2024-01-01 DOI: 10.1155/2024/1220644
Jun Lin, Zhenyu Wang, Hongtao Wang, Yuping Li, Yao Liu, Yige He, Qian Liu, Zichuan Chen, Yuan Ji

Aims/Introduction: Phage display method is a crucial tool to find novel clinically valuable diabetes-associated autoantigens and identify known autoantigen epitopes that are associated with diabetes and could provide scientific support and guidance for the artificial construction and synthesis of Type I diabetes mellitus (T1DM) novel biomarkers. Materials and Methods: The phage display system was used for the "biopanning" of T1DM serum. Following the sequencing of the phage DNAs, the homologous sequences of the above fusion heptapeptide were further investigated by BLAST to track the origin of the polypeptide sequences. The antibody spectrum revealed new T1DM-associated epitopes and antibodies. Results: A total of 1200 phage DNA were sequenced and 9 conserved polypeptide sequences were collected. It was confirmed that the zinc transporter and islet amyloid protease were among them. The conserved polypeptide sequence 8 and another three distinctive polypeptide sequences derived from Proteus were discovered. Furthermore, we expressed recombinant proteins with homologous polypeptide sequences for the human islet amyloid polypeptide (IAPP) and polypeptide precursor human zinc transporter 8 (ZNT8). Through clinical sample detection for the serum from T1DM (n = 100) and T2DM (n = 200) patients, results demonstrate the importance and relevance of these polypeptides in the recognition and classification of various forms of diabetes. Conclusion: Human pancreatic and concurrent bacterial-derived protein antigens and their epitopes were identified in this research by the phage display system, which is crucial for distinguishing different types of diabetes.

目的/简介:噬菌体展示法是发现具有临床价值的新型糖尿病相关自身抗原和鉴定与糖尿病相关的已知自身抗原表位的重要工具,可为人工构建和合成 I 型糖尿病(T1DM)新型生物标志物提供科学支持和指导。材料与方法:使用噬菌体展示系统对 T1DM 血清进行 "生物筛选"。在对噬菌体 DNA 进行测序后,通过 BLAST 进一步研究了上述融合七肽的同源序列,以追踪多肽序列的来源。抗体谱显示了新的 T1DM 相关表位和抗体。研究结果共对 1200 个噬菌体 DNA 进行了测序,收集到 9 个保守的多肽序列。经证实,锌转运体和胰岛淀粉样蛋白酶也在其中。我们还发现了源自变形杆菌的保守多肽序列 8 和另外三个独特的多肽序列。此外,我们还表达了具有人类胰岛淀粉样蛋白多肽(IAPP)和人类锌转运体 8(ZNT8)多肽前体同源多肽序列的重组蛋白。通过对 T1DM(100 人)和 T2DM(200 人)患者的血清进行临床样本检测,结果表明了这些多肽在识别和分类各种糖尿病方面的重要性和相关性。结论本研究通过噬菌体展示系统鉴定了人类胰腺和并发细菌衍生蛋白抗原及其表位,这对区分不同类型的糖尿病至关重要。
{"title":"Screening of Diabetes-Associated Autoantigens and Serum Antibody Profiles Using a Phage Display System.","authors":"Jun Lin, Zhenyu Wang, Hongtao Wang, Yuping Li, Yao Liu, Yige He, Qian Liu, Zichuan Chen, Yuan Ji","doi":"10.1155/2024/1220644","DOIUrl":"10.1155/2024/1220644","url":null,"abstract":"<p><p><b>Aims/Introduction:</b> Phage display method is a crucial tool to find novel clinically valuable diabetes-associated autoantigens and identify known autoantigen epitopes that are associated with diabetes and could provide scientific support and guidance for the artificial construction and synthesis of Type I diabetes mellitus (T1DM) novel biomarkers. <b>Materials and Methods:</b> The phage display system was used for the \"biopanning\" of T1DM serum. Following the sequencing of the phage DNAs, the homologous sequences of the above fusion heptapeptide were further investigated by BLAST to track the origin of the polypeptide sequences. The antibody spectrum revealed new T1DM-associated epitopes and antibodies. <b>Results:</b> A total of 1200 phage DNA were sequenced and 9 conserved polypeptide sequences were collected. It was confirmed that the zinc transporter and islet amyloid protease were among them. The conserved polypeptide sequence 8 and another three distinctive polypeptide sequences derived from Proteus were discovered. Furthermore, we expressed recombinant proteins with homologous polypeptide sequences for the human islet amyloid polypeptide (IAPP) and polypeptide precursor human zinc transporter 8 (ZNT8). Through clinical sample detection for the serum from T1DM (<i>n</i> = 100) and T2DM (<i>n</i> = 200) patients, results demonstrate the importance and relevance of these polypeptides in the recognition and classification of various forms of diabetes. <b>Conclusion:</b> Human pancreatic and concurrent bacterial-derived protein antigens and their epitopes were identified in this research by the phage display system, which is crucial for distinguishing different types of diabetes.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"1220644"},"PeriodicalIF":2.8,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11527542/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557819","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dairy Farmers' Knowledge, Attitudes, and Practices (KAP) Towards Aflatoxin Contamination in Milk and Feeds in Bahir Dar, Ethiopia. 埃塞俄比亚 Bahir Dar 奶农对牛奶和饲料中黄曲霉毒素污染的认识、态度和做法 (KAP)。
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-23 eCollection Date: 2024-01-01 DOI: 10.1155/2024/5568286
Sosina Dires Sewunet, Elias Kebede, Achenef Melaku, Andnet Yirga Assefa, Atnaf Alebie, Aschalew Assefa, Habtamu Ayalew, Girma Birhan, Ambaye Worku Kenubih

Aflatoxins, primary foodborne mycotoxins, come from Aspergillus flavus and Aspergillus parasiticus fungi. They pose significant health risks to humans and animals, creating a major challenge in the dairy sector. The objective of this study is to evaluate the knowledge, attitudes, and practices (KAP) of dairy farmers regarding aflatoxin contamination in milk and feeds. Conducted as a cross-sectional study in Bahir Dar city between November 2019 and February 2020, this investigation randomly selected 106 dairy farms for data collection. Face-to-face interviews, facilitated by a semistructured questionnaire, were employed. Findings indicate that 59.4% of respondents displayed good knowledge, while a substantial 94.3% exhibited a favorable attitude. Intriguingly, only 1.9% implemented good practices. Notably, the educational background of dairy farmers emerged as a significant factor influencing their KAP (p < 0.05). Conversely, various sociodemographic factors did not yield a significant impact on the KAP of dairy farmers. Despite a robust knowledge base and favorable attitudes towards aflatoxin among dairy farmers, the study highlights a significant gap in the implementation of recommended practices. This finding emphasizes the necessity for increased efforts to cultivate and reinforce good practices. Collaborative initiatives involving diverse stakeholders are crucial to reducing aflatoxin contamination in the dairy industry.

黄曲霉毒素是主要的食源性霉菌毒素,来自黄曲霉菌和寄生曲霉菌。黄曲霉毒素对人类和动物的健康构成严重威胁,是乳制品行业面临的一项重大挑战。本研究旨在评估奶农对牛奶和饲料中黄曲霉毒素污染的认识、态度和做法(KAP)。本次调查于2019年11月至2020年2月在巴哈达尔市进行,作为一项横断面研究,随机选择了106个奶牛场进行数据收集。采用半结构化问卷进行面对面访谈。调查结果显示,59.4% 的受访者表现出良好的知识水平,94.3% 的受访者表现出良好的态度。耐人寻味的是,只有 1.9% 的受访者实施了良好做法。值得注意的是,奶农的教育背景是影响其 KAP 的一个重要因素(p < 0.05)。相反,各种社会人口因素对奶农的 KAP 并无显著影响。尽管奶牛场主对黄曲霉毒素有较强的知识基础和良好的态度,但本研究突出表明,在实施建议的操作方法方面还存在很大差距。这一发现强调了加大力度培养和强化良好做法的必要性。涉及不同利益相关方的合作倡议对于减少乳制品行业的黄曲霉毒素污染至关重要。
{"title":"Dairy Farmers' Knowledge, Attitudes, and Practices (KAP) Towards Aflatoxin Contamination in Milk and Feeds in Bahir Dar, Ethiopia.","authors":"Sosina Dires Sewunet, Elias Kebede, Achenef Melaku, Andnet Yirga Assefa, Atnaf Alebie, Aschalew Assefa, Habtamu Ayalew, Girma Birhan, Ambaye Worku Kenubih","doi":"10.1155/2024/5568286","DOIUrl":"10.1155/2024/5568286","url":null,"abstract":"<p><p>Aflatoxins, primary foodborne mycotoxins, come from <i>Aspergillus flavus</i> and <i>Aspergillus parasiticus</i> fungi. They pose significant health risks to humans and animals, creating a major challenge in the dairy sector. The objective of this study is to evaluate the knowledge, attitudes, and practices (KAP) of dairy farmers regarding aflatoxin contamination in milk and feeds. Conducted as a cross-sectional study in Bahir Dar city between November 2019 and February 2020, this investigation randomly selected 106 dairy farms for data collection. Face-to-face interviews, facilitated by a semistructured questionnaire, were employed. Findings indicate that 59.4% of respondents displayed good knowledge, while a substantial 94.3% exhibited a favorable attitude. Intriguingly, only 1.9% implemented good practices. Notably, the educational background of dairy farmers emerged as a significant factor influencing their KAP (<i>p</i> < 0.05). Conversely, various sociodemographic factors did not yield a significant impact on the KAP of dairy farmers. Despite a robust knowledge base and favorable attitudes towards aflatoxin among dairy farmers, the study highlights a significant gap in the implementation of recommended practices. This finding emphasizes the necessity for increased efforts to cultivate and reinforce good practices. Collaborative initiatives involving diverse stakeholders are crucial to reducing aflatoxin contamination in the dairy industry.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"5568286"},"PeriodicalIF":2.8,"publicationDate":"2024-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11524713/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142545369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Extracellular Traps in Patients Diagnosed With Bacterial Vaginosis, Trichomoniasis, Candidiasis, Noninfectious Vaginitis and Cytolytic Vaginosis. 被诊断为细菌性阴道病、滴虫病、念珠菌病、非感染性阴道炎和溶细胞性阴道病患者的细胞外捕获器。
IF 2.8 Q3 MICROBIOLOGY Pub Date : 2024-10-23 eCollection Date: 2024-01-01 DOI: 10.1155/2024/7619416
María G Ramírez-Ledesma, Berenice Bermudes-Valencia, Rosa M Balderas-Parada, Susana G Salazar-Ramírez, Ruth Reyes-Cortés, Francisco J Magos-Vázquez, José J Torres-Hernández, Eva E Avila

Vaginal infections are a public health problem associated with serious health complications due to the exacerbated inflammation they generate. Vaginal inflammation may also occur in some noninfectious processes, such as noninfectious vaginitis and cytolytic vaginosis. Immune system cells respond to infections through various mechanisms, such as the formation of extracellular traps (ETs), which are DNA networks associated with effector proteins. Many pathogens induce ETs formation in vitro, as occurs in some natural infections. A recent report indicates that human vaginal infections in vivo generate ETs. Therefore, in this study, we aimed to identify ETs in samples from 40 donors who were diagnosed with infectious (i.e., bacterial vaginosis, candidiasis and trichomoniasis) and noninfectious (i.e., noninfectious vaginitis and cytolytic vaginosis) vaginal inflammation. We were able to observe ETs by identifying the LL-37 peptide, which is associated with DNA networks. In seven vaginal swabs from the control group (formed by 19 donors without vaginal infection symptoms), we detected at least one pathogen per sample and observed ETs; thus, these donors were considered asymptomatic. The remaining 12 donors were confirmed to be healthy, as their exudates did not present any tested pathogens, sign of inflammation or ETs. ETs in vaginal inflammatory processes can worsen inflammation but may also help control infection.

阴道感染是一个公共卫生问题,由于其产生的炎症加剧,会导致严重的健康并发症。阴道炎症也可能发生在一些非感染过程中,如非感染性阴道炎和细胞溶解性阴道炎。免疫系统细胞通过各种机制对感染做出反应,如形成细胞外捕获物(ETs),这是一种与效应蛋白相关的 DNA 网络。许多病原体会在体外诱导 ETs 的形成,某些自然感染也会出现这种情况。最近的一份报告显示,人体阴道感染在体内会产生 ETs。因此,在本研究中,我们旨在从 40 名被诊断为感染性(即细菌性阴道炎、念珠菌病和滴虫病)和非感染性(即非感染性阴道炎和细胞溶解性阴道炎)阴道炎症的供体样本中鉴定 ETs。我们通过识别与 DNA 网络相关的 LL-37 肽来观察 ET。在对照组(由 19 名无阴道感染症状的捐献者组成)的 7 份阴道拭子中,我们在每个样本中至少检测到一种病原体,并观察到了 ET;因此,这些捐献者被视为无症状。其余 12 名捐献者被证实是健康的,因为他们的渗出物中没有任何经检测的病原体、炎症迹象或 ET。阴道炎症过程中的 ET 会加重炎症,但也可能有助于控制感染。
{"title":"Extracellular Traps in Patients Diagnosed With Bacterial Vaginosis, Trichomoniasis, Candidiasis, Noninfectious Vaginitis and Cytolytic Vaginosis.","authors":"María G Ramírez-Ledesma, Berenice Bermudes-Valencia, Rosa M Balderas-Parada, Susana G Salazar-Ramírez, Ruth Reyes-Cortés, Francisco J Magos-Vázquez, José J Torres-Hernández, Eva E Avila","doi":"10.1155/2024/7619416","DOIUrl":"10.1155/2024/7619416","url":null,"abstract":"<p><p>Vaginal infections are a public health problem associated with serious health complications due to the exacerbated inflammation they generate. Vaginal inflammation may also occur in some noninfectious processes, such as noninfectious vaginitis and cytolytic vaginosis. Immune system cells respond to infections through various mechanisms, such as the formation of extracellular traps (ETs), which are DNA networks associated with effector proteins. Many pathogens induce ETs formation <i>in vitro</i>, as occurs in some natural infections. A recent report indicates that human vaginal infections <i>in vivo</i> generate ETs. Therefore, in this study, we aimed to identify ETs in samples from 40 donors who were diagnosed with infectious (i.e., bacterial vaginosis, candidiasis and trichomoniasis) and noninfectious (i.e., noninfectious vaginitis and cytolytic vaginosis) vaginal inflammation. We were able to observe ETs by identifying the LL-37 peptide, which is associated with DNA networks. In seven vaginal swabs from the control group (formed by 19 donors without vaginal infection symptoms), we detected at least one pathogen per sample and observed ETs; thus, these donors were considered asymptomatic. The remaining 12 donors were confirmed to be healthy, as their exudates did not present any tested pathogens, sign of inflammation or ETs. ETs in vaginal inflammatory processes can worsen inflammation but may also help control infection.</p>","PeriodicalId":14098,"journal":{"name":"International Journal of Microbiology","volume":"2024 ","pages":"7619416"},"PeriodicalIF":2.8,"publicationDate":"2024-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11524696/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142545370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
International Journal of Microbiology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1