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Erratum: Review on Approved and Inprogress COVID-19 Vaccines. 勘误:COVID-19 已批准和在研疫苗综述。
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-02-27 eCollection Date: 2024-01-01 DOI: 10.5812/ijpr-146470
Soraya Shahhosseini

[This corrects the article e124228 in vol. 21.].

[此处更正了第 21 卷中的 e124228 条]。
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引用次数: 0
Synthesis and Biological Evaluation of Novel Thiadiazole Derivatives as Antiplatelet Agents. 作为抗血小板药物的新型噻二唑衍生物的合成与生物学评价
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2024-01-07 eCollection Date: 2023-01-01 DOI: 10.5812/ijpr-141846
Mahsima Khakpash, Marjan Esfahanizadeh, Mohammad Mahboubi-Rabbani, Salimeh Amidi, Farzad Kobarfard

A novel series of thiadiazole compounds was synthesized through the reaction of thiosemicarbazone intermediates with 2, 3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ). The antiplatelet activity of the synthesized compounds was evaluated using an aggregation test with adenosine diphosphate (ADP) and arachidonic acid (AA) as platelet aggregation inducers. Among the synthesized analogs, compound 3b exhibited the most potent inhibition of platelet aggregation induced by ADP (half maximal inhibitory concentration [IC50] = 39 ± 11 µM). Molecular docking studies of 3b revealed hydrogen bonds between the nitrogen of the thiadiazole ring and Lys280. The tolyl ring exhibited hydrophobic interactions with Tyr105, similar to the antagonist co-crystallized with P2Y12 (PDB ID: 4NTJ). These compounds have the potential to serve as lead molecules for designing P2Y12 inhibitors.

通过硫代氨基甲酸中间体与 2,3-二氯-5,6-二氰基-1,4-苯醌(DDQ)的反应,合成了一系列新型噻二唑化合物。以二磷酸腺苷(ADP)和花生四烯酸(AA)作为血小板聚集诱导剂,通过聚集试验评估了合成化合物的抗血小板活性。在合成的类似物中,化合物 3b 对 ADP 诱导的血小板聚集具有最强的抑制作用(半最大抑制浓度 [IC50] = 39 ± 11 µM)。3b 的分子对接研究显示,噻二唑环的氮和 Lys280 之间存在氢键。甲苯基环与 Tyr105 发生疏水相互作用,这与与 P2Y12 共结晶的拮抗剂(PDB ID:4NTJ)相似。这些化合物有望成为设计 P2Y12 抑制剂的先导分子。
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引用次数: 0
The Mediating Role of Organizational Identification on Sustainable Human Resources Management and Organizational Citizenship Behavior’s Relationship 组织认同对可持续人力资源管理和组织公民行为关系的中介作用
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-12-31 DOI: 10.5812/ijpr-140447
Shiva Sheikhi, N. Yousefi
Background: There is a general theme in studying employees in the research and development (R&D) department individual performance studies, where tremendous attention has been paid to innovation performance compared to behavioral and particularly extra-role behavior of employees in this department. Objectives: This study investigates the relationship between sustainable human resource management (s-HRM) and organizational citizenship behavior (OCB) through the mediating role of organizational identification (OI) in R&D employees. Methods: A standard questionnaire was used to evaluate s-HRM, OI, and OCB. Five hundred questionnaires were delivered to all employees of the research and development departments of 59 Iranian pharmaceutical companies, and finally, 316 completed questionnaires were collected. Results: The results of data analysis with WarpPls software revealed a positive and significant relationship between s-HRM and OI, as well as OI and OCB. Investigating the mediating role of OI showed that OI partially mediates the relationship between s-HRM and OCB. The model was checked in terms of its fit indices, which were evaluated as favorable. Conclusions: The findings suggest that s-HRM improves employees' willingness to go beyond their defined job description to display in OCB. Additionally, they imply that strengthening OI can improve OCB in employees.
背景:研究研发部门员工个人绩效的一个普遍主题是,与该部门员工的行为,特别是角色外行为相比,创新绩效受到了极大关注。研究目的本研究通过组织认同(OI)在研发部门员工中的中介作用,探讨可持续人力资源管理(s-HRM)与组织公民行为(OCB)之间的关系。研究方法采用标准问卷对可持续人力资源管理、组织认同和组织公民行为进行评估。向 59 家伊朗制药公司研发部门的所有员工发放了 500 份调查问卷,最终收集到 316 份填写完毕的调查问卷。研究结果使用 WarpPls 软件进行数据分析的结果显示,s-HRM 与 OI 以及 OI 与 OCB 之间存在显著的正相关关系。对 OI 的中介作用的研究表明,OI 部分中介了 s-HRM 与 OCB 之间的关系。对模型的拟合指数进行了检验,评价结果良好。结论研究结果表明,s-HRM 提高了员工在其规定的工作描述之外表现出 OCB 的意愿。此外,研究还表明,加强 OI 可以改善员工的 OCB。
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引用次数: 0
Biological Activity of Novel Pyrrole Derivatives as Antioxidant Agents Against 6-OHDA Induced Neurotoxicity in PC12 Cells. 新型吡咯衍生物作为抗氧化剂对 PC12 细胞中 6-OHDA 诱导的神经毒性的生物活性。
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-12-24 eCollection Date: 2023-01-01 DOI: 10.5812/ijpr-140450
Hanieh Javid, Ebrahim Saeedian Moghadam, Maryam Farahmandfar, Mahboubeh Manouchehrabadi, Mohsen Amini, Mona Salimi, Anahita Torkaman-Boutorabi

Background: Neuroinflammation and oxidative stress are critical factors involved in the pathogenesis of Parkinson's disease (PD), the second most common progressive neurodegenerative disease. Additionally, lipid peroxidation end products contribute to inflammatory responses by activating pro-inflammatory genes. Lipid peroxidation occurs as a result of either the overproduction of intracellular reactive oxygen species (ROS) or the reaction of cyclooxygenases (COXs).

Objectives: In this study, we examined the role of 1,5-diaryl pyrrole derivatives against the neurotoxic effects of 6-hydroxydopamine (6-OHDA) in a cellular model of PD.

Methods: PC12 cells were pre-treated with compounds 2-(4-chlorophenyl)-5-methyl-1-(4-(trifluoromethoxy)phenyl)-1H-pyrrole (A), 2-(4-chlorophenyl)-1-(4-methoxyphenyl)-5-methyl-1H-pyrrole (B), and 1-(2-chlorophenyl)-2-(4-chlorophenyl)-5-methyl-1H-pyrrole (C), respectively, 24 h before exposure to 6-OHDA. We conducted various assays, including 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazoliumbromide (MTT), ROS, and lipid peroxidation assays, Hoechst staining, Annexin V/PI, Western blotting analysis and ELISA method, to assess the neuroprotective effects of pyrrole derivatives on 6-OHDA-induced neurotoxicity.

Results: Our results demonstrated that apoptosis induction was inhibited by controlling the lipid peroxidation process in the in vitro model following pre-treatment with compounds A, B, and, somehow, C. Furthermore, compounds A and C likely act by suppressing the COX-2/PGE2 pathway, a mechanism not attributed to compound B.

Conclusions: These findings suggest that the novel synthetic pyrrolic derivatives may be considered promising neuroprotective agents that can potentially prevent the progression of PD.

背景:神经炎症和氧化应激是帕金森病(PD)发病机制中的关键因素,帕金森病是第二大常见的进行性神经退行性疾病。此外,脂质过氧化终产物会激活促炎基因,从而导致炎症反应。脂质过氧化是细胞内活性氧(ROS)过度产生或环氧化酶(COXs)反应的结果:在这项研究中,我们研究了1,5-二芳基吡咯衍生物在一种帕金森病细胞模型中对抗6-羟基多巴胺(6-OHDA)神经毒性效应的作用:PC12 细胞在暴露于 6-OHDA 前 24 小时分别用化合物 2-(4-氯苯基)-5-甲基-1-(4-(三氟甲氧基)苯基)-1H-吡咯(A)、2-(4-氯苯基)-1-(4-甲氧基苯基)-5-甲基-1H-吡咯(B)和 1-(2-氯苯基)-2-(4-氯苯基)-5-甲基-1H-吡咯(C)进行预处理。我们进行了多种检测,包括 3-(4,5-二甲基噻唑-2-基)-2,5-二苯基溴化四氮唑(MTT)、ROS 和脂质过氧化检测、Hoechst 染色、Annexin V/PI、Western 印迹分析和 ELISA 法,以评估吡咯衍生物对 6-OHDA 诱导的神经毒性的神经保护作用:结果:我们的研究结果表明,在体外模型中使用化合物 A、B 和 C 进行预处理后,通过控制脂质过氧化过程抑制了细胞凋亡诱导:这些研究结果表明,新型合成吡咯烷酮衍生物可被视为具有前景的神经保护剂,有可能预防帕金森病的进展。
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引用次数: 0
Design and Evaluation of a Novel Anti-microbial Peptide from Cathelicidin-2: Selectively Active Against Acinetobacter baumannii. 设计和评估来自猫蓟素-2 的新型抗微生物肽:对鲍曼不动杆菌具有选择性活性
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-12-12 eCollection Date: 2023-01-01 DOI: 10.5812/ijpr-141920
Fariba Fathi, Maryam Ghobeh, Farshad H Shirazi, Maryam Tabarzad

Background: Infections caused by pathogenic microorganisms have increased the need for hospital care and have thus represented a public health problem and a significant financial burden. Classical treatments consisting of traditional antibiotics face several challenges today. Anti-microbial peptides (AMPs) are a conserved characteristic of the innate immune response among different animal species to defend against pathogenic microorganisms.

Objectives: In this study, a new peptide sequence (mCHTL131-140) was designed using the in silico approach.

Methods: Cathelicidin-2 (UniprotID: Q2IAL7) was used as a potential antimicrobial protein, and a novel 10 - 12 amino acids sequence AMP was designed using bioinformatics tools and the AMP databases. Then, the anti-bacterial, anti-biofilm, and anti-fungal properties of the peptide, as well as its hemolytic activity and cytotoxicity towards human fibroblast (HDF) cells, were investigated in vitro.

Results: Online bioinformatics tools indicated that the peptide sequence could have anti-bacterial, anti-viral, anti-fungal, and anti-biofilm properties with little hemolytic properties. The experimental tests confirmed that mCHTL131-140 exhibited the best anti-bacterial properties against Acinetobacter baumannii and had fair anti-fungal properties. Besides, it did not cause red blood cell lysis and showed no cytotoxicity towards HDF cells.

Conclusions: In general, the designed peptide can be considered a promising AMP to control hospital-acquired infections by A. baumannii.

背景:病原微生物引起的感染增加了对医院护理的需求,从而成为一个公共卫生问题和巨大的经济负担。由传统抗生素组成的传统治疗方法如今面临着一些挑战。抗微生物肽(AMPs)是不同动物物种先天性免疫反应的一种保守特性,用于抵御病原微生物:在这项研究中,我们采用硅学方法设计了一种新的肽序列(mCHTL131-140):方法:以Cathelicidin-2(UniprotID:Q2IAL7)为潜在抗菌蛋白,利用生物信息学工具和AMP数据库设计了一个10-12个氨基酸序列的新型AMP。然后,在体外研究了该肽的抗菌、抗生物膜和抗真菌特性,以及它对人成纤维细胞(HDF)的溶血活性和细胞毒性:在线生物信息学工具表明,该多肽序列具有抗菌、抗病毒、抗真菌和抗生物膜的特性,但溶血特性较弱。实验测试证实,mCHTL131-140 对鲍曼不动杆菌的抗菌性能最好,抗真菌性能也不错。此外,它不会导致红细胞溶解,对 HDF 细胞也没有细胞毒性:总的来说,所设计的多肽可被视为一种很有前景的 AMP,可用于控制医院获得性鲍曼不动杆菌感染。
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引用次数: 0
Screening and Identification of DNA Nanostructure Aptamer Using the SELEX Method for ‎Detection of Epsilon Toxin 利用 SELEX 方法筛选和鉴定用于检测 Epsilon 毒素的 DNA 纳米结构适配体
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-12-08 DOI: 10.5812/ijpr-140505
Nafiseh Shafiei, H. Mahmoodzadeh Hosseini, Jafar Amani, Ali Mirhosseini, H. Jafary
Background: Epsilon toxin (ETX), produced by Clostridium perfringens, is one of the most ‎potent toxins ‎known, with a lethal potency approaching that of botulinum neurotoxins. Epsilon toxin ‎is responsible ‎for enteritis. Therefore, the development of rapid and simple methods to ‎detect ETX ‎is imperative. Aptamers are single-stranded oligonucleotides that can bind ‎tightly to specific ‎target molecules with an affinity comparable to that of monoclonal antibodies (mAbs). ‎DNA aptamers ‎can serve as tools for the molecular identification of organisms, such as ‎pathogen subspecies.‎ Objectives: This study aimed to isolate high-affinity single-stranded DNA (ssDNA) ‎aptamers against ETX.‎ Methods: This study identified aptamers using the Systematic Evolution of Ligands by Exponential Enrichment (SELEX) method, enzyme-linked apta-sorbent assay (ELASA), and surface plasmon resonance (SPR) to determine ‎the affinity and ‎specificity of the newly obtained aptamers targeting ETX. ‎ Results: Several aptamers obtained through the ‎SELEX process were studied. Among them, 2 aptamers, ETX clone 3 (ETX3; dissociation constant [Kd] = 8.4 ± 2.4E-9M) ‎and ETX11 (Kd = 6.3 ± 1.3E-9M) had favorable specificity for ETX. The limits of detection ‎were 0.21 and 0.08 μg/mL for ETX3 and ETX11, respectively.‎ Conclusions: The discovered aptamers can be used in various aptamer-based rapid diagnostic tests for the detection of ETX.
背景:产气荚膜梭菌(Clostridium perfringens)产生的Epsilon毒素(ETX)是已知最“有效”的毒素之一,其致命效力接近肉毒杆菌神经毒素。Epsilon毒素是导致肠炎的原因。因此,开发快速、简便的方法来检测ETX势在必行。适配体是一种单链寡核苷酸,可以与特异性靶分子紧密结合,其亲和力与单克隆抗体(mab)相当。DNA适体可以作为生物分子鉴定的工具,如病原体亚种。目的:本研究旨在分离抗ETX的高亲和力单链DNA (ssDNA)适配体。方法:本研究采用配体系统进化法(SELEX)、酶联apta吸附法(ELASA)和表面等离子体共振法(SPR)鉴定适配体,以确定新获得的适配体靶向ETX的亲和力和特异性。结果:对通过SELEX工艺获得的几个适体进行了研究。其中适配体2个,ETX克隆3号(ETX3;解离常数[Kd] = 8.4±2.4E-9M)和ETX11 (Kd = 6.3±1.3E-9M)对ETX具有良好的特异性。ETX3和ETX11的检出限分别为0.21和0.08 μg/mL。结论:所发现的适配体可用于各种基于适配体的快速诊断检测ETX。
{"title":"Screening and Identification of DNA Nanostructure Aptamer Using the SELEX Method for ‎Detection of Epsilon Toxin","authors":"Nafiseh Shafiei, H. Mahmoodzadeh Hosseini, Jafar Amani, Ali Mirhosseini, H. Jafary","doi":"10.5812/ijpr-140505","DOIUrl":"https://doi.org/10.5812/ijpr-140505","url":null,"abstract":"Background: Epsilon toxin (ETX), produced by Clostridium perfringens, is one of the most ‎potent toxins ‎known, with a lethal potency approaching that of botulinum neurotoxins. Epsilon toxin ‎is responsible ‎for enteritis. Therefore, the development of rapid and simple methods to ‎detect ETX ‎is imperative. Aptamers are single-stranded oligonucleotides that can bind ‎tightly to specific ‎target molecules with an affinity comparable to that of monoclonal antibodies (mAbs). ‎DNA aptamers ‎can serve as tools for the molecular identification of organisms, such as ‎pathogen subspecies.‎ Objectives: This study aimed to isolate high-affinity single-stranded DNA (ssDNA) ‎aptamers against ETX.‎ Methods: This study identified aptamers using the Systematic Evolution of Ligands by Exponential Enrichment (SELEX) method, enzyme-linked apta-sorbent assay (ELASA), and surface plasmon resonance (SPR) to determine ‎the affinity and ‎specificity of the newly obtained aptamers targeting ETX. ‎ Results: Several aptamers obtained through the ‎SELEX process were studied. Among them, 2 aptamers, ETX clone 3 (ETX3; dissociation constant [Kd] = 8.4 ± 2.4E-9M) ‎and ETX11 (Kd = 6.3 ± 1.3E-9M) had favorable specificity for ETX. The limits of detection ‎were 0.21 and 0.08 μg/mL for ETX3 and ETX11, respectively.‎ Conclusions: The discovered aptamers can be used in various aptamer-based rapid diagnostic tests for the detection of ETX.","PeriodicalId":14595,"journal":{"name":"Iranian Journal of Pharmaceutical Research","volume":"34 25","pages":""},"PeriodicalIF":1.6,"publicationDate":"2023-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138589097","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Performance Evaluation of Biochip Chemiluminescent Immunoassay for Screening Seven Mycotoxins in Wheat Flour Simultaneously 生物芯片化学发光免疫分析法同时筛查小麦粉中七种霉菌毒素的性能评估
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-12-06 DOI: 10.5812/ijpr-140356
M. Osouli, H. Yazdanpanah, J. Salamzadeh, S. Eslamizad
Background: Wheat grains are susceptible to mycotoxins, toxic natural secondary metabolites generated by certain fungi on agricultural produce in the field during growth, harvest, transportation, or storage. Therefore, wheat flour can be contaminated with mycotoxins, which seriously threaten human health. Methods: A rapid method for screening seven mycotoxins in wheat flour was validated in accordance with Commission Decision 2002/657/EC. With this multi-analytical screening method, 7 prevalent mycotoxins (fumonisin B1, ochratoxin A, aflatoxin G1, deoxynivalenol, T-2 toxin, aflatoxin B1, and zearalenone) can be determined simultaneously. The method’s applicability was demonstrated by screening 7 mycotoxins in 39 wheat flour samples collected from different bakeries in Tehran province, Iran. Results: The validation results indicated that for all 7 mycotoxins, the positivity threshold (T) was above the cut-off value (Fm), and no false positive results were obtained for any of the mycotoxins. The screening results of 12 packaged and 27 bulk wheat flour samples indicated that the concentrations of all mentioned mycotoxins were higher than the cut-off (in the relative light unit [RLU]), and all the samples were compliant. Conclusions: The present study revealed that the biochip-based technique is valid for identifying and assessing the levels of 7 mycotoxins in grain samples, such as wheat flour, at the measured validation concentrations. The method was simple, fast, and able to screen 7 mycotoxins simultaneously. The test process of the kit is easy to conduct, and the results are straightforward to interpret.
背景:小麦籽粒易受真菌毒素的影响,真菌毒素是田间农产品在生长、收获、运输或储存过程中由某些真菌产生的有毒天然次生代谢物。因此,小麦粉中可能含有真菌毒素,严重威胁人体健康。方法:根据欧盟委员会第2002/657/EC号决议,对小麦粉中7种真菌毒素的快速筛选方法进行了验证。该方法可同时检测出7种常见真菌毒素(伏马毒素B1、赭曲霉毒素A、黄曲霉毒素G1、脱氧雪腐菌素醇、T-2毒素、黄曲霉毒素B1、玉米赤霉烯酮)。通过筛选从伊朗德黑兰省不同面包店采集的39份小麦粉样品中的7种真菌毒素,证明了该方法的适用性。结果:验证结果表明,7种真菌毒素的阳性阈值(T)均高于临界值(Fm),均未出现假阳性结果。12个包装小麦粉和27个散装小麦粉样品的筛选结果表明,上述真菌毒素浓度均高于截止值(相对轻单位[RLU]),所有样品均符合要求。结论:本研究表明,基于生物芯片的技术可以有效地识别和评估谷物样品(如小麦粉)中7种真菌毒素在测定的验证浓度下的水平。该方法简便、快速,可同时筛选7种真菌毒素。该试剂盒的测试过程易于进行,结果易于解释。
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引用次数: 0
Antibacterial Activity and Toxicity of Zinc Oxide Nanoparticles Combined with Supernatants of Lactobacillus spp. Against ESKAPE Bacteria: A Novel Mixture 氧化锌纳米颗粒与乳酸杆菌上清液对 ESKAPE 细菌的抗菌活性和毒性:一种新型混合物
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-12-02 DOI: 10.5812/ijpr-139222
Somayeh Soleymanzadeh, R. Hosseini Doust, Ali Majidpour, Mahdi Adabi, Sara Minaeian
Background: The emergence of multidrug resistance among nosocomial pathogens has prompted researchers to look for new antibacterial sources. Metal nanoparticles and probiotic products have attracted the attention of researchers. However, combination therapy is an attractive alternative in this field. Objectives: This study evaluated the antibacterial activity and toxicity of Zinc Oxide nanoparticles (ZnO-NPs) combined with Cell-free Supernatant (CFS) of Lactobacillus plantarum (L. plantarum) and Lactobacillus acidophilus (L. acidophilus) alone and in a novel mixture. Methods: Antibacterial effects and cytotoxic properties of ZnO-NPs, CFS of L. plantarum (SLP), and CFS of L. acidophilus (SLA) were determined alone and in a mixture against ESKAPE strains. In addition, the viability percentage of the cells was evaluated after exposure to these agents. Results: Antibacterial mixtures (ZnO-NPs with SLP or ZnO-NPs with SLA) demonstrated synergistic and additive effects against Pseudomonas aeruginosa (FIC≤0.75), Acinetobacter baumannii (FIC = 1), and Escherichia coli (FIC≤0.75). The viability percentage of the cells after 24 h of exposure to a mixture of ZnO-NPs and SLA (about 50%) was more than when the cells were exposed to ZnO-NPs alone (about 30%) at the same concentration. Conclusions: A mixture of ZnO-NPs and CFS of probiotics can be an alternative to antibiotics, with more effectiveness and fewer side effects.
背景:院内病原菌多药耐药的出现促使研究人员寻找新的抗菌药物来源。金属纳米颗粒和益生菌产品引起了研究人员的关注。然而,在这个领域,联合治疗是一个有吸引力的选择。目的:研究氧化锌纳米颗粒(ZnO-NPs)与植物乳杆菌(L. plantarum)和嗜酸乳杆菌(L. acidophilus)的无细胞上清(CFS)单独和新型混合物的抗菌活性和毒性。方法:测定ZnO-NPs、植物乳杆菌CFS (SLP)和嗜酸乳杆菌CFS (SLA)单独和混合对ESKAPE菌株的抑菌作用和细胞毒性。此外,对暴露于这些试剂后的细胞存活率进行了评估。结果:ZnO-NPs与SLP或ZnO-NPs与SLA的抗菌组合对铜绿假单胞菌(FIC≤0.75)、鲍曼不动杆菌(FIC = 1)和大肠杆菌(FIC≤0.75)具有协同和加性作用。在相同浓度下,ZnO-NPs和SLA混合作用24 h后,细胞存活率(约50%)高于单独作用ZnO-NPs时(约30%)。结论:ZnO-NPs和CFS混合益生菌可作为抗生素的替代方案,具有更高的疗效和更小的副作用。
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引用次数: 0
Developing a Discrete Choice Experiment Instrument for Evaluating Patients’ Preferences in Precision Oncology 开发离散选择实验工具,评估患者对精准肿瘤学的偏好
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-11-30 DOI: 10.5812/ijpr-141797
Zahra Karimi Majd, N. Yousefi, M. Peikanpour, Mohammad Sistanizad, Ghader Mohammadnezhad, Behniya Azadmehr, F. Peiravian
Background: In addition to clinical and technical considerations, patients’ preferences are essential for evaluating interventions such as precision medicine (PM). Objectives: This study aimed to identify and prioritize attributes of precision oncology that are important for patients to develop and validate a standard stated preference instrument. Methods: The key attributes of precision oncology and their related levels were extracted from the systematic literature review and were presented on a validated 5-point Likert scale questionnaire to experts (n = 35). In two rounds of Delphi, participants scored and prioritized the attributes through this personally administered questionnaire to identify the five most important ones to develop a discrete choice experiment (DCE) instrument. The developed DCE questionnaire was subsequently validated, providing a robust and standard instrument for evaluating patients’ preferences for precision oncology. Results: Based on the consensus criteria, the final DCE included four attributes and a total of 14 levels, which were access to treatment (easy/not easy), out-of-pocket (OOP) expenditures (four levels according to treatment costs in the country), change in life expectancy (LE, six levels from an average gain of three months to four years), and change in quality of life (QoL, improvement or no change). Conclusions: The above-mentioned attributes represent patients’ main preferences from the views of the Iranian experts. The developed DCE questionnaire can be used to assess patients’ preferences and willingness to pay (WTP) in precision oncology.
背景:除了临床和技术方面的考虑外,患者的偏好对于评估精准医疗(PM)等干预措施也至关重要。研究目的本研究旨在确定精准肿瘤学中对患者重要的属性并对其进行优先排序,以开发和验证标准的陈述偏好工具。方法:从系统性文献综述中提取精准肿瘤学的关键属性及其相关水平,并以经过验证的 5 点李克特量表问卷的形式呈现给专家(n = 35)。在两轮德尔菲法中,参与者通过这份亲自发放的问卷对属性进行打分和优先排序,以确定五个最重要的属性,从而开发出离散选择实验(DCE)工具。随后对开发的离散选择实验(DCE)问卷进行了验证,为评估患者对精准肿瘤学的偏好提供了一个可靠的标准工具。结果:根据共识标准,最终的离散选择实验包括四个属性和共 14 个等级,分别是获得治疗(容易/不容易)、自费(OOP)支出(根据国家的治疗费用分为四个等级)、预期寿命变化(LE,从平均延长三个月到四年分为六个等级)和生活质量变化(QoL,改善或无变化)。结论根据伊朗专家的意见,上述属性代表了患者的主要偏好。开发的 DCE 问卷可用于评估精准肿瘤学中患者的偏好和支付意愿(WTP)。
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引用次数: 0
Unveiling Key Biomarkers and Therapeutic Drugs in Polycystic Ovary Syndrome (PCOS) Through Pathway Enrichment Analysis and Hub Gene-miRNA Networks. 通过通路富集分析和枢纽基因-miRNA 网络揭示多囊卵巢综合征 (PCOS) 的关键生物标记物和治疗药物。
IF 1.6 4区 医学 Q3 PHARMACOLOGY & PHARMACY Pub Date : 2023-11-20 eCollection Date: 2023-01-01 DOI: 10.5812/ijpr-139985
Roozbeh Heidarzadehpilehrood, Maryam Pirhoushiaran, Malina Binti Osman, King-Hwa Ling, Habibah Abdul Hamid

Background: Polycystic ovary syndrome (PCOS) affects women of reproductive age globally with an incidence rate of 5% - 26%. Growing evidence reports important roles for microRNAs (miRNAs) in the pathophysiology of granulosa cells (GCs) in PCOS.

Objectives: The objectives of this study were to identify the top differentially expressed miRNAs (DE-miRNAs) and their corresponding targets in hub gene-miRNA networks, as well as identify novel DE-miRNAs by analyzing three distinct microarray datasets. Additionally, functional enrichment analysis was performed using bioinformatics approaches. Finally, interactions between the 5 top-ranked hub genes and drugs were investigated.

Methods: Using bioinformatics approaches, three GC profiles from the gene expression omnibus (GEO), namely gene expression omnibus series (GSE)-34526, GSE114419, and GSE137684, were analyzed. Targets of the top DE-miRNAs were predicted using the multiMiR R package, and only miRNAs with validated results were retrieved. Genes that were common between the "DE-miRNA prediction results" and the "existing tissue DE-mRNAs" were designated as differentially expressed genes (DEGs). Gene ontology (GO) and pathway enrichment analyses were implemented for DEGs. In order to identify hub genes and hub DE-miRNAs, the protein-protein interaction (PPI) network and miRNA-mRNA interaction network were constructed using Cytoscape software. The drug-gene interaction database (DGIdb) database was utilized to identify interactions between the top-ranked hub genes and drugs.

Results: Out of the top 20 DE-miRNAs that were retrieved from the GSE114419 and GSE34526 microarray datasets, only 13 of them had "validated results" through the multiMiR prediction method. Among the 13 DE-miRNAs investigated, only 5, namely hsa-miR-8085, hsa-miR-548w, hsa-miR-612, hsa-miR-1470, and hsa-miR-644a, demonstrated interactions with the 10 hub genes in the hub gene-miRNA networks in our study. Except for hsa-miR-612, the other 4 DE-miRNAs, including hsa-miR-8085, hsa-miR-548w, hsa-miR-1470, and hsa-miR-644a, are novel and had not been reported in PCOS pathogenesis before. Also, GO and pathway enrichment analyses identified "pathogenic E. coli infection" in the Kyoto encyclopedia of genes and genomes (KEGG) and "regulation of Rac1 activity" in FunRich as the top pathways. The drug-hub gene interaction network identified ACTB, JUN, PTEN, KRAS, and MAPK1 as potential targets to treat PCOS with therapeutic drugs.

Conclusions: The findings from this study might assist researchers in uncovering new biomarkers and potential therapeutic drug targets in PCOS treatment.

背景:多囊卵巢综合征(PCOS多囊卵巢综合征(PCOS)影响着全球育龄妇女,发病率为 5%-26%。越来越多的证据表明,微小RNA(miRNA)在多囊卵巢综合征颗粒细胞(GCs)的病理生理学中发挥着重要作用:本研究的目的是通过分析三个不同的微阵列数据集,确定在枢纽基因-miRNA网络中差异表达最高的miRNA(DE-miRNA)及其相应的靶点,并确定新的DE-miRNA。此外,还利用生物信息学方法进行了功能富集分析。最后,研究了 5 个排名靠前的中心基因与药物之间的相互作用:使用生物信息学方法分析了基因表达总库(GEO)中的三个 GC 图谱,即基因表达总库系列(GSE)-34526、GSE114419 和 GSE137684。使用 multiMiR R 软件包预测了顶级 DE-miRNA 的靶标,只检索了结果有效的 miRNA。将 "DE-miRNA 预测结果 "与 "现有组织 DE-mRNA "之间的共同基因指定为差异表达基因(DEG)。对 DEGs 进行了基因本体(GO)和通路富集分析。为了确定枢纽基因和枢纽 DE-miRNA,使用 Cytoscape 软件构建了蛋白质-蛋白质相互作用(PPI)网络和 miRNA-mRNA 相互作用网络。利用药物基因相互作用数据库(DGIdb)来确定排名靠前的中心基因与药物之间的相互作用:结果:从 GSE114419 和 GSE34526 微阵列数据集中检索到的前 20 个 DE-miRNA 中,只有 13 个通过 multiMiR 预测方法获得了 "验证结果"。在调查的 13 个 DE-miRNA 中,只有 5 个(即 hsa-miR-8085、hsa-miR-548w、hsa-miR-612、hsa-miR-1470 和 hsa-miR-644a)在我们的研究中与枢纽基因-miRNA 网络中的 10 个枢纽基因发生了相互作用。除hsa-miR-612外,其他4个DE-miRNA,包括hsa-miR-8085、hsa-miR-548w、hsa-miR-1470和hsa-miR-644a,都是新的DE-miRNA,以前从未在PCOS发病机制中报道过。此外,GO和通路富集分析发现,京都基因和基因组百科全书(KEGG)中的 "致病性大肠杆菌感染 "和FunRich中的 "Rac1活性调控 "是最重要的通路。药物-枢纽基因相互作用网络将ACTB、JUN、PTEN、KRAS和MAPK1确定为使用治疗药物治疗多囊卵巢综合征的潜在靶点:本研究的发现可能有助于研究人员发现治疗多囊卵巢综合症的新生物标志物和潜在治疗药物靶点。
{"title":"Unveiling Key Biomarkers and Therapeutic Drugs in Polycystic Ovary Syndrome (PCOS) Through Pathway Enrichment Analysis and Hub Gene-miRNA Networks.","authors":"Roozbeh Heidarzadehpilehrood, Maryam Pirhoushiaran, Malina Binti Osman, King-Hwa Ling, Habibah Abdul Hamid","doi":"10.5812/ijpr-139985","DOIUrl":"10.5812/ijpr-139985","url":null,"abstract":"<p><strong>Background: </strong>Polycystic ovary syndrome (PCOS) affects women of reproductive age globally with an incidence rate of 5% - 26%. Growing evidence reports important roles for microRNAs (miRNAs) in the pathophysiology of granulosa cells (GCs) in PCOS.</p><p><strong>Objectives: </strong>The objectives of this study were to identify the top differentially expressed miRNAs (DE-miRNAs) and their corresponding targets in hub gene-miRNA networks, as well as identify novel DE-miRNAs by analyzing three distinct microarray datasets. Additionally, functional enrichment analysis was performed using bioinformatics approaches. Finally, interactions between the 5 top-ranked hub genes and drugs were investigated.</p><p><strong>Methods: </strong>Using bioinformatics approaches, three GC profiles from the gene expression omnibus (GEO), namely gene expression omnibus series (GSE)-34526, GSE114419, and GSE137684, were analyzed. Targets of the top DE-miRNAs were predicted using the multiMiR R package, and only miRNAs with validated results were retrieved. Genes that were common between the \"DE-miRNA prediction results\" and the \"existing tissue DE-mRNAs\" were designated as differentially expressed genes (DEGs). Gene ontology (GO) and pathway enrichment analyses were implemented for DEGs. In order to identify hub genes and hub DE-miRNAs, the protein-protein interaction (PPI) network and miRNA-mRNA interaction network were constructed using Cytoscape software. The drug-gene interaction database (DGIdb) database was utilized to identify interactions between the top-ranked hub genes and drugs.</p><p><strong>Results: </strong>Out of the top 20 DE-miRNAs that were retrieved from the GSE114419 and GSE34526 microarray datasets, only 13 of them had \"validated results\" through the multiMiR prediction method. Among the 13 DE-miRNAs investigated, only 5, namely <i>hsa-miR-8085</i>, <i>hsa-miR-548w</i>, <i>hsa-miR-612</i>, <i>hsa-miR-1470</i>, and <i>hsa-miR-644a</i>, demonstrated interactions with the 10 hub genes in the hub gene-miRNA networks in our study. Except for <i>hsa-miR-612</i>, the other 4 DE-miRNAs, including <i>hsa-miR-8085</i>, <i>hsa-miR-548w</i>, <i>hsa-miR-1470</i>, and <i>hsa-miR-644a</i>, are novel and had not been reported in PCOS pathogenesis before. Also, GO and pathway enrichment analyses identified \"pathogenic <i>E. coli</i> infection\" in the Kyoto encyclopedia of genes and genomes (KEGG) and \"regulation of Rac1 activity\" in FunRich as the top pathways. The drug-hub gene interaction network identified <i>ACTB</i>, <i>JUN</i>, <i>PTEN</i>, <i>KRAS</i>, and <i>MAPK1</i> as potential targets to treat PCOS with therapeutic drugs.</p><p><strong>Conclusions: </strong>The findings from this study might assist researchers in uncovering new biomarkers and potential therapeutic drug targets in PCOS treatment.</p>","PeriodicalId":14595,"journal":{"name":"Iranian Journal of Pharmaceutical Research","volume":"22 1","pages":"e139985"},"PeriodicalIF":1.6,"publicationDate":"2023-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10912876/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140039376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Iranian Journal of Pharmaceutical Research
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