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Characterization of genetic loci associated with allergic conjunctivitis 过敏性结膜炎相关基因位点的研究。
IF 11.2 1区 医学 Q1 ALLERGY Pub Date : 2026-03-01 Epub Date: 2025-12-31 DOI: 10.1016/j.jaci.2025.12.1000
Fredrika Koskimäki MD , Katri Ruokamo-Korva MSc , Oona Ahokas BSc , Johanna Liinamaa MD, PhD , Kadri Reis PhD , Anu Reigo MD, PhD , FinnGen, Estonian Biobank Research Team, Priit Palta PhD , Johannes Kettunen PhD , Minna K. Karjalainen PhD , Ville Saarela MD, PhD

Background

Despite the high prevalence of allergic conjunctivitis, the genetic factors contributing to it have not been characterized in detail.

Objective

We sought to characterize genetic factors associated with allergic conjunctivitis both in relation to and independent of systemic atopic or allergic conditions.

Methods

We performed a genome-wide association study meta-analysis using data from FinnGen, Estonian Biobank, and UK Biobank cohorts. A total of 45,734 cases with allergic conjunctivitis and 1,084,159 controls were included. We conducted a phenome-wide association study and pathway and enrichment analyses, and assessed genetic correlations with other phenotypes.

Results

Genome-wide significant (P < 5 × 10−8) associations were identified for allergic conjunctivitis at 34 loci, many of which had not been reported to associate with allergic conjunctivitis before. Many of the associated loci included genes involved in immunology and allergy-related conditions, for example, ID2 and TSLP. Several loci were also associated with other allergic health conditions, such as asthma, allergic rhinitis, and eczema. Three loci (EIF2AK2, RANBP2, and NFAT5) had no previous association with allergy-related phenotypes. We detected that allergic conjunctivitis is associated with pathways related to neuroinflammation, immune responses, and cytokine signaling. We detected an enrichment of genes associated with immune-related biological processes such as cytokine production. Allergic conjunctivitis was genetically correlated with 27 phenotypes.

Conclusions

We identified 34 allergic conjunctivitis–associated loci, most of which were involved in immunology and allergy-related conditions. Our findings underline the central role of inflammation-related genes in genetic predisposition to allergic conjunctivitis and advance the overall understanding of its genetic background.
背景:尽管过敏性结膜炎的发病率很高,但其遗传因素尚未被详细描述。目的:我们旨在描述与过敏性结膜炎相关的遗传因素,这些遗传因素既与系统性特应性或过敏性疾病相关,也与之无关。方法:我们利用FinnGen、爱沙尼亚生物银行和英国生物银行的数据进行了全基因组关联研究(GWAS)荟萃分析。其中过敏性结膜炎45 734例,对照组1 084 159例。我们进行了全表型关联研究、途径和富集分析,并评估了与其他表型的遗传相关性。结果:34个位点与变应性结膜炎在全基因组范围内存在显著相关性(p < 5 × 10-8),其中许多位点以前未被报道与变应性结膜炎相关。许多相关基因座包括免疫和过敏相关疾病的基因,如ID2和TSLP。一些基因座还与其他过敏性健康状况有关,如哮喘、过敏性鼻炎和湿疹。三个基因座(EIF2AK2, RANBP2, NFAT5)先前与过敏相关表型没有关联。我们发现过敏性结膜炎与神经炎症、免疫反应和细胞因子信号通路相关。我们检测到与免疫相关的生物过程(如细胞因子的产生)相关的基因富集。变应性结膜炎与27种表型基因相关。结论:我们确定了34个过敏性结膜炎相关基因座,其中大多数涉及免疫学和过敏相关疾病。我们的研究结果强调了炎症相关基因在过敏性结膜炎遗传易感性中的核心作用,并促进了对其遗传背景的全面了解。
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引用次数: 0
Allogeneic hematopoietic cell transplantation for partial RAG deficiency in children and adults: Excellent outcomes with a reduced-intensity posttransplantation cyclophosphamide-based approach. 同种异体造血细胞移植治疗儿童和成人部分RAG缺乏症:移植后以环磷酰胺为基础的治疗方法,强度降低,效果良好。
IF 11.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-28 DOI: 10.1016/j.jaci.2026.01.030
Dimana Dimitrova, Marita Bosticardo, Ottavia M Delmonte, Heather Kenney, Annie An, Francesca Pala, Gloria Magro, Katherine Myint-Hpu, Esther Kang, Enrico Santangeli, Angelina Angelova, Ivan Vujkovic-Cvijin, Benjamin Schwarz, Jessenia Campos, Amy Chai, Alison Cusmano, Francis A Flomerfelt, Mustafa A Hyder, Ralph Mangusan, Kamil Rechache, Ruby Sabina, William Telford, Heidi H Kong, Keisuke Nagao, Anahita Agharahimi, Jenna R E Bergerson, Alexandra F Freeman, Steven M Holland, Hanadys Ale, Aisha El-Marsafy, Srdjan Pasic, James Verbsky, Jolan Walter, Christopher G Kanakry, Luigi D Notarangelo, Jennifer A Kanakry

Background: Partial recombinase activating gene deficiency (pRD) leads to combined immunodeficiency with immune dysregulation. It can be cured by allogeneic hematopoietic cell transplantation (HCT), but optimal referral criteria and approaches remain to be defined.

Objective: Our study evaluated low-toxicity approaches to HCT for pRD.

Methods: Thirteen children and adults with pRD received radiation-free, predominantly reduced-intensity conditioning (pentostatin/cyclophosphamide/busulfan) HCT with posttransplantation cyclophosphamide-based graft-versus-host disease (GVHD) prophylaxis at median (range) age 20 (4-46) years.

Results: With median 2.6 years' follow-up, overall survival for the entire cohort was estimated at 92% and 83% at 1 and 2 years and 100% and 90% for reduced-intensity conditioning recipients (n = 12), with 2 deaths attributed to sepsis. Reversal of clinical manifestations was associated with immune reconstitution, with minimal de novo autoimmunity, 15% 1-year cumulative incidence of grade III-IV acute GVHD, and no chronic GVHD. Vα7.2-positive T-cell proportion increased rapidly after HCT, while mucosa-associated invariant T-cell reconstitution lagged. Dysreactive CD19hiCD21lo and 9G4+ B cells decreased after HCT, along with clinically relevant autoantibodies. However, baseline elevated anti-type I interferon antibodies, potentially predisposing to severe viral infections, decreased slowly, although neutralizing activity was reduced at last follow-up. Outcomes did not differ by donor carrier status or HLA matching. Bronchiectasis exacerbations incurred rehospitalizations in long-term follow-up of patients who entered HCT with irreversible lung disease.

Conclusion: Reduced-intensity conditioning HCT with posttransplantation cyclophosphamide-based GVHD prophylaxis is safe and effectively reverses immune dysfunction in patients with pRD.

背景:部分RAG缺陷(pRD)导致免疫缺陷和免疫失调,可以通过异体造血细胞移植(HCT)治愈,但最佳转诊标准和方法仍未确定。目的:探讨低毒性HCT治疗pRD的方法。方法:13名患有pRD的儿童和成人在中位年龄20岁(范围4-46岁)时接受无辐射,主要是降低强度(RIC,戊司他汀/环磷酰胺/丁硫凡)的HCT和移植后基于环磷酰胺(PTCy)的移植物抗宿主病(GVHD)预防。结果:中位随访2.6年,整个队列1年和2年的总生存率(OS)估计为92%和83%,RIC受体(n=12)的总生存率为100%和90%,其中2例死亡归因于败血症。临床表现的逆转与免疫重建有关,有最小的新生自身免疫,1年累积发病率为15%的III-IV级急性GVHD,无慢性GVHD。hct后Va7.2+ T细胞比例迅速增加,而粘膜相关的不变T细胞重构滞后。异常反应性CD19hi、CD21low和9G4+ B细胞在hct后减少,同时伴有临床相关的自身抗体。然而,基线升高的抗I型干扰素抗体(可能导致严重病毒感染)下降缓慢,尽管中和活性在最后随访时有所降低。结果没有因供体携带者状况和hla匹配而不同。支气管扩张加重发生再住院的长期随访患者进入HCT不可逆的肺部疾病。结论:RIC allo-HCT联合基于ptc的GVHD预防是安全有效的,可逆转pRD患者的免疫功能障碍。
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引用次数: 0
Effects of Proton Pump Inhibitors on Remodeling and Fibrosis in Eosinophilic Esophagitis. 质子泵抑制剂对嗜酸性食管炎重塑和纤维化的影响。
IF 11.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-27 DOI: 10.1016/j.jaci.2026.02.025
Colby S Sharlin, Shingo Yamada, Yuki Maekawa, Kasumi Osonoi, Kazuhiro Matsuyama, Garrett A Osswald, Mark Rochman, Richard J Taylor, Mari Yamaguchi, Yuichiro Tanaka, Ting Wen, Evan S Dellon, Marc E Rothenberg, Tetsuo Shoda

Background: Eosinophilic esophagitis (EoE) is a progressive fibrostenotic disease. Although proton pump inhibitors (PPIs) are a first-line EoE treatment due to their anti-inflammatory effects, their effects on remodeling/fibrosis-likely driven in part by transforming growth factor β (TGF-β)-remain uncertain.

Objective: To elucidate remodeling/fibrosis effects, this study evaluated whether PPIs impact the esophageal transcriptome of PPI-responsive EoE and counteract TGF-β‒induced fibrotic responses in human primary esophageal fibroblasts (HEFs).

Methods: Prospectively collected paired esophageal biopsies from patients with EoE pre‒/post‒PPI treatment were analyzed by RNA sequencing (RNA-seq). Histologic responsiveness to PPIs was defined as responders (<15 eosinophils/high-power field, n = 10) or non-responders (≥15 eosinophils/high-power field, n = 9). The ability of PPIs (esomeprazole, omeprazole) to attenuate in vitro, TGF-β‒mediated remodeling/fibrosis in HEFs was analyzed by qPCR, RNA-seq, Western blotting, immunofluorescence, cell migration assays, and reactive oxygen species (ROS) measurements.

Results: In PPI responders, we identified 746 differentially expressed genes pre‒/post‒PPI treatment (≥2-fold change, P < .05), particularly those enriched in remodeling/fibrosis. In HEFs, TGF-β increased collagen I and α-smooth muscle actin expression via SMAD2/3 phosphorylation; however, PPIs attenuated these responses. RNA-seq revealed that PPIs reversed approximately 30% of TGF-β‒induced changes overlapping with fibrotic responses; 78 genes were concordantly modulated between patient biopsies and HEFs. Functional assays further confirmed that PPIs reduced TGF-β-induced collagen deposition, fibroblast motility, and ROS production.

Conclusions: PPIs modulate remodeling/fibrosis-related gene expression in patients with EoE and inhibit TGF-β‒induced profibrotic responses in HEFs, supporting antifibrotic potential that may help limit fibrostenotic progression in EoE.

背景:嗜酸性粒细胞性食管炎(EoE)是一种进行性纤维狭窄性疾病。尽管质子泵抑制剂(PPIs)因其抗炎作用而成为EoE的一线治疗药物,但其对重塑/纤维化的作用(可能部分由转化生长因子β (TGF-β)驱动)仍不确定。目的:为了阐明重塑/纤维化作用,本研究评估了PPIs是否影响ppi应答EoE的食管转录组,并抵消TGF-β诱导的人原发性食管成纤维细胞(HEFs)的纤维化反应。方法:通过RNA测序(RNA-seq)分析前瞻性收集的EoE患者在ppi治疗前/后的成对食管活检。对PPI的组织学反应性被定义为应答者(结果:在PPI应答者中,我们发现746个差异表达基因在PPI治疗前/后(≥2倍变化,P < 0.05),特别是那些富含重塑/纤维化的基因。在hef中,TGF-β通过SMAD2/3磷酸化增加I型胶原和α-平滑肌肌动蛋白的表达;然而,ppi减弱了这些反应。RNA-seq显示PPIs逆转了大约30%的TGF-β诱导的与纤维化反应重叠的变化;78个基因在患者活检和hef之间一致调节。功能分析进一步证实PPIs降低TGF-β诱导的胶原沉积、成纤维细胞运动和ROS生成。结论:PPIs调节EoE患者的重塑/纤维化相关基因表达,抑制TGF-β诱导的hef纤维化反应,支持抗纤维化潜力,可能有助于限制EoE的纤维狭窄进展。
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引用次数: 0
Additive effects of common and rare genetic variants on inflammatory bowel disease risk in a cohort with immunodeficiency. 免疫缺陷队列中常见和罕见基因变异对炎症性肠病风险的加性效应
IF 11.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-27 DOI: 10.1016/j.jaci.2026.01.015
Sruthi Srinivasan, Wenjia Cao, Morgan N Similuk, Rajarshi Ghosh, Bryce A Seifert, Mari Tokita, Justin Lack, Beatriz E Marciano, Christa S Zerbe, Pamela A Frischmeyer-Guerrerio, Gulbu Uzel, Ivan Fuss, Alexandra F Freeman, Michail S Lionakis, Luigi D Notarangelo, Ottavia M Delmonte, Harry L Malech, Jenna R E Bergerson, Steven M Holland, Magdalena A Walkiewicz, Jia Yan
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引用次数: 0
Interleukin-33 enhances responsiveness and mast cell mediator release in isolated human small airways. 白细胞介素-33增强离体人小气道的反应性和肥大细胞介质释放。
IF 11.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-26 DOI: 10.1016/j.jaci.2026.02.022
Maria Belikova, Anna-Karin Johnsson, Johan Kolmert, Craig E Wheelock, Willem Abma, Mamdoh Al-Ameri, Erik Sachs, Kasra Vali Jalali, Mikael Adner, Gunnar Nilsson, Sven-Erik Dahlén, Jesper Säfholm

Background: Concomitant exposure to interleukin (IL)-33, thymic stromal lymphopoietin (TSLP), and IL-25 augments antigen-induced contractions of isolated human small bronchi through enhanced mast cell reactivity.

Objective: The individual contribution of alarmins was tested in antigen-induced airway hyperresponsiveness and hyperosmolarity-induced responses evoked by mannitol, a surrogate model of exercise-induced bronchoconstriction.

Methods: Intact segments of small airways, isolated from fresh human lung tissue, were incubated with IL-33, TSLP, IL-25, or buffer control for 48 hours. Contractile responses to anti-IgE or mannitol were then assessed using myograph systems. Mast cell degranulation and mediator release were analysed both from the bronchial segments and from isolated primary human lung mast cells (HLMCs) as well as from the human mast cell line LAD2.

Results: IL-33 increased contractile force (Emax) to anti-IgE and hyperosmolar mannitol by 62% and 78%, respectively. IL-33 also doubled antigen-IgE-induced prostaglandin (PG)D2 release from bronchial segments as well as enhanced degranulation, cysteinyl-leukotriene (cysLT) and PGD2 release from isolated HLMCs stimulated by anti-IgE or mannitol. In contrast, TSLP and IL-25 had no effect on contraction, degranulation, or mediator release in response to either stimulus.

Conclusion: IL-33, but not TSLP or IL-25, enhances bronchoconstriction in human small bronchi by amplifying mast cell activation and mediator release in response to both antigen and hyperosmolar challenge.

背景:同时暴露于白细胞介素(IL)-33、胸腺基质淋巴生成素(TSLP)和IL-25可通过增强肥大细胞反应性增强抗原诱导的离体人小支气管收缩。目的:观察甘露醇(运动性支气管收缩的替代模型)引起的抗原诱导气道高反应性和高渗透压诱导反应中警报器的个体贡献。方法:从新鲜人肺组织中分离的完整小气道段,与IL-33、TSLP、IL-25或缓冲对照孵育48小时。然后用肌图系统评估抗ige或甘露醇的收缩反应。对支气管段、分离的原代人肺肥大细胞(HLMCs)和人肥大细胞系LAD2的肥大细胞脱颗粒和介质释放进行了分析。结果:IL-33使抗ige和高渗透性甘露醇的收缩力(Emax)分别提高62%和78%。IL-33还能使抗原ige诱导的支气管段前列腺素(PG)D2释放增加一倍,并增强抗ige或甘露醇刺激的离体hlmc的脱颗粒、半胱氨酸-白三烯(cysLT)和PGD2释放。相比之下,TSLP和IL-25在两种刺激下对收缩、脱颗粒或介质释放没有影响。结论:IL-33,而不是TSLP或IL-25,通过增强肥大细胞对抗原和高渗刺激的激活和介质释放来增强人小支气管的支气管收缩。
{"title":"Interleukin-33 enhances responsiveness and mast cell mediator release in isolated human small airways.","authors":"Maria Belikova, Anna-Karin Johnsson, Johan Kolmert, Craig E Wheelock, Willem Abma, Mamdoh Al-Ameri, Erik Sachs, Kasra Vali Jalali, Mikael Adner, Gunnar Nilsson, Sven-Erik Dahlén, Jesper Säfholm","doi":"10.1016/j.jaci.2026.02.022","DOIUrl":"https://doi.org/10.1016/j.jaci.2026.02.022","url":null,"abstract":"<p><strong>Background: </strong>Concomitant exposure to interleukin (IL)-33, thymic stromal lymphopoietin (TSLP), and IL-25 augments antigen-induced contractions of isolated human small bronchi through enhanced mast cell reactivity.</p><p><strong>Objective: </strong>The individual contribution of alarmins was tested in antigen-induced airway hyperresponsiveness and hyperosmolarity-induced responses evoked by mannitol, a surrogate model of exercise-induced bronchoconstriction.</p><p><strong>Methods: </strong>Intact segments of small airways, isolated from fresh human lung tissue, were incubated with IL-33, TSLP, IL-25, or buffer control for 48 hours. Contractile responses to anti-IgE or mannitol were then assessed using myograph systems. Mast cell degranulation and mediator release were analysed both from the bronchial segments and from isolated primary human lung mast cells (HLMCs) as well as from the human mast cell line LAD2.</p><p><strong>Results: </strong>IL-33 increased contractile force (E<sub>max</sub>) to anti-IgE and hyperosmolar mannitol by 62% and 78%, respectively. IL-33 also doubled antigen-IgE-induced prostaglandin (PG)D<sub>2</sub> release from bronchial segments as well as enhanced degranulation, cysteinyl-leukotriene (cysLT) and PGD<sub>2</sub> release from isolated HLMCs stimulated by anti-IgE or mannitol. In contrast, TSLP and IL-25 had no effect on contraction, degranulation, or mediator release in response to either stimulus.</p><p><strong>Conclusion: </strong>IL-33, but not TSLP or IL-25, enhances bronchoconstriction in human small bronchi by amplifying mast cell activation and mediator release in response to both antigen and hyperosmolar challenge.</p>","PeriodicalId":14936,"journal":{"name":"Journal of Allergy and Clinical Immunology","volume":" ","pages":""},"PeriodicalIF":11.2,"publicationDate":"2026-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147321540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Eosinophilic chronic rhinosinusitis with nasal polyps: Squamous metaplasia as an associated remodeling feature. 嗜酸性慢性鼻窦炎伴鼻息肉:鳞状皮化生是一种相关的重塑特征。
IF 11.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-26 DOI: 10.1016/j.jaci.2026.02.020
Shaobing Xie, Sijie Jiang, Junyi Zhang, Zhihai Xie, Weihong Jiang, Hua Zhang

Background: Epithelial remodeling is a key pathologic feature of eosinophilic chronic rhinosinusitis with nasal polyps (eCRSwNP). Among the various remodeling patterns, squamous metaplasia remains an underrecognized component in eCRSwNP.

Objective: This study aimed to systematically assess the prevalence of squamous metaplasia in eCRSwNP and explore its potential mechanisms.

Methods: A total of 844 chronic rhinosinusitis with nasal polyps specimens were histologically reviewed to assess the prevalence of squamous metaplasia and compare rates between eCRSwNP and noneosinophilic (neCRSwNP) subtypes. RNA sequencing was used to profile related gene expression in controls, neCRSwNP, and eCRSwNP tissues, with reverse transcription quantitative PCR and immunofluorescence validation in an independent cohort. Nasal epithelial cells were cultured in an air-liquid interface (ALI) system, stimulated with IL-4/IL-13 and dupilumab to evaluate morphologic and molecular changes.

Results: Of the 844 chronic rhinosinusitis with nasal polyps samples, 132 (15.6%) showed squamous metaplasia, with higher prevalence in eCRSwNP (25.7%) compared to neCRSwNP (7.5%). Transcriptomic analysis revealed significantly elevated expression scores of keratinocyte differentiation-related genes in eCRSwNP, with KRT6A and KRT13 markedly upregulated. Cohort validation confirmed increased mRNA and protein levels of KRT6A, KRT13, filaggrin, p63, and Ki-67 in eCRSwNP, predominantly localized to the epithelium. In vitro, IL-4/IL-13 exposure induced squamous alterations in ALI cultures, characterized by increased expression of squamous differentiation markers and reduction in ciliated and secretory cell markers. These pathologic changes were attenuated by dupilumab treatment.

Conclusion: Squamous metaplasia is a common but underappreciated epithelial remodeling feature in eCRSwNP. IL-4/IL-13 drive this pathologic shift, whereas dupilumab attenuates these changes, suggesting a role in preserving epithelial homeostasis beyond inflammation control.

背景:上皮重塑是嗜酸性慢性鼻窦炎伴鼻息肉(eCRSwNP)的一个关键病理特征。在各种重塑模式中,鳞状皮化生在eCRSwNP中仍然是一个未被充分认识的成分。目的:本研究旨在系统评估eCRSwNP中鳞状皮化生的患病率,并探讨其潜在机制。方法:对844例CRSwNP标本进行组织学检查,评估鳞状化生的患病率,并比较eCRSwNP和非嗜酸性(neCRSwNP)亚型的发病率。RNA测序用于分析对照组、neCRSwNP和eCRSwNP组织中的相关基因表达,并在独立队列中进行RT-qPCR和免疫荧光验证。在气液界面(ALI)系统中培养鼻上皮细胞,用IL-4/IL-13和dupilumab刺激,以评估形态学和分子变化。结果:在844份CRSwNP样本中,132份(15.6%)显示鳞状化生,eCRSwNP的患病率(25.7%)高于neCRSwNP(7.5%)。转录组学分析显示,eCRSwNP中角质形成细胞分化相关基因的表达评分显著升高,其中KRT6A和KRT13显著上调。队列验证证实,eCRSwNP中KRT6A、KRT13、聚丝蛋白(FLG)、p63和Ki67的mRNA和蛋白水平升高,主要定位于上皮细胞。在体外,IL-4/IL-13暴露诱导ALI培养物的鳞状改变,其特征是鳞状分化标志物的表达增加,纤毛细胞和分泌细胞标志物的表达减少。dupilumab治疗减轻了这些病理改变。结论:鳞状化生是eCRSwNP中常见但未被充分认识的上皮重塑特征。IL-4/IL-13驱动这种病理转变,而dupilumab减弱了这些变化,这表明在炎症控制之外,IL-4/IL-13在保持上皮稳态方面发挥作用。
{"title":"Eosinophilic chronic rhinosinusitis with nasal polyps: Squamous metaplasia as an associated remodeling feature.","authors":"Shaobing Xie, Sijie Jiang, Junyi Zhang, Zhihai Xie, Weihong Jiang, Hua Zhang","doi":"10.1016/j.jaci.2026.02.020","DOIUrl":"10.1016/j.jaci.2026.02.020","url":null,"abstract":"<p><strong>Background: </strong>Epithelial remodeling is a key pathologic feature of eosinophilic chronic rhinosinusitis with nasal polyps (eCRSwNP). Among the various remodeling patterns, squamous metaplasia remains an underrecognized component in eCRSwNP.</p><p><strong>Objective: </strong>This study aimed to systematically assess the prevalence of squamous metaplasia in eCRSwNP and explore its potential mechanisms.</p><p><strong>Methods: </strong>A total of 844 chronic rhinosinusitis with nasal polyps specimens were histologically reviewed to assess the prevalence of squamous metaplasia and compare rates between eCRSwNP and noneosinophilic (neCRSwNP) subtypes. RNA sequencing was used to profile related gene expression in controls, neCRSwNP, and eCRSwNP tissues, with reverse transcription quantitative PCR and immunofluorescence validation in an independent cohort. Nasal epithelial cells were cultured in an air-liquid interface (ALI) system, stimulated with IL-4/IL-13 and dupilumab to evaluate morphologic and molecular changes.</p><p><strong>Results: </strong>Of the 844 chronic rhinosinusitis with nasal polyps samples, 132 (15.6%) showed squamous metaplasia, with higher prevalence in eCRSwNP (25.7%) compared to neCRSwNP (7.5%). Transcriptomic analysis revealed significantly elevated expression scores of keratinocyte differentiation-related genes in eCRSwNP, with KRT6A and KRT13 markedly upregulated. Cohort validation confirmed increased mRNA and protein levels of KRT6A, KRT13, filaggrin, p63, and Ki-67 in eCRSwNP, predominantly localized to the epithelium. In vitro, IL-4/IL-13 exposure induced squamous alterations in ALI cultures, characterized by increased expression of squamous differentiation markers and reduction in ciliated and secretory cell markers. These pathologic changes were attenuated by dupilumab treatment.</p><p><strong>Conclusion: </strong>Squamous metaplasia is a common but underappreciated epithelial remodeling feature in eCRSwNP. IL-4/IL-13 drive this pathologic shift, whereas dupilumab attenuates these changes, suggesting a role in preserving epithelial homeostasis beyond inflammation control.</p>","PeriodicalId":14936,"journal":{"name":"Journal of Allergy and Clinical Immunology","volume":" ","pages":""},"PeriodicalIF":11.2,"publicationDate":"2026-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147317538","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-cell profiling of paired nasal brushing and tissue samples reveals distinct cellular landscapes and immune phenotypes. 配对鼻刷和组织样本的单细胞分析揭示了不同的细胞景观和免疫表型。
IF 11.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-25 DOI: 10.1016/j.jaci.2026.02.019
Gyeongyeob Kim, Sol Lee, Min-Seok Koo, Sungmin Moon, Dachan Kim, Hyung-Ju Cho, Chang-Hoon Kim, Min-Seok Rha

Background: Since the coronavirus disease 2019 pandemic, local immune responses in the nasal mucosa have become an area of growing research interest. In this context, studies using noninvasive nasal brushing (NB) samples have increased markedly. However, it remains unclear whether NB samples accurately reflect the immune landscape of the nasal tissue (NT).

Objective: A study was conducted to directly compare the cellular composition and immune cell responses of NB and NT samples.

Methods: Paired NB and NT samples were collected from the same anatomic site. The frequency, phenotype, and effector functions of epithelial and immune cells were analyzed by single-cell RNA sequencing and flow cytometry.

Results: NB samples contained a significantly higher proportion of epithelial cells than NT samples, while fibroblasts, endothelial cells, and B cells were significantly less abundant. Within the epithelial compartment, NB showed an enrichment of ciliated and secretory cells, whereas basal cells were less frequent and glandular basal/secretory cells were rarely detected. Additionally, CD103+ tissue-resident memory T cells and CD56bright natural killer cells were more abundant in NB samples than in NT samples. Functional analyses revealed distinct T-cell effector profiles between the two sample types. Notably, severe acute respiratory syndrome coronavirus 2-specific T cells were significantly less frequent in NB samples than in NT.

Conclusions: NB is well suited for sampling cells located near the epithelial surface but captures fewer cells from deeper mucosal layers. Additionally, NB samples display distinct T-cell effector profiles and virus-specific T-cell frequencies compared with NT. These findings highlight the importance of selecting sampling methods that align with the specific objectives of a study.

背景:自2019冠状病毒病大流行以来,鼻黏膜局部免疫反应已成为人们日益关注的研究领域。在此背景下,使用无创鼻腔刷洗(NB)样本的研究显著增加。然而,NB样本是否准确反映鼻组织(NT)的免疫景观尚不清楚。目的:直接比较NB和NT样品的细胞组成和免疫细胞反应。方法:配对NB和NT标本取自同一解剖部位。利用单细胞RNA测序和流式细胞术分析上皮细胞和免疫细胞的频率、表型和效应功能。结果:NB样品中上皮细胞的比例明显高于NT样品,而成纤维细胞、内皮细胞和B细胞的丰度明显低于NT样品。在上皮腔室内,NB显示纤毛细胞和分泌细胞的富集,而基底细胞较少,腺体基底/分泌细胞很少检测到。此外,NB样本中CD103+组织驻留记忆T细胞和CD56bright NK细胞比NT样本中更丰富。功能分析揭示了两种样品类型之间不同的t细胞效应谱。值得注意的是,NB样本中sars - cov -2特异性T细胞的频率明显低于nt样本。结论:NB非常适合取样位于上皮表面附近的细胞,但从更深的粘膜层捕获的细胞较少。此外,与NT相比,NB样品显示出不同的T细胞效应谱和病毒特异性T细胞频率。这些发现强调了选择符合研究特定目标的采样方法的重要性。
{"title":"Single-cell profiling of paired nasal brushing and tissue samples reveals distinct cellular landscapes and immune phenotypes.","authors":"Gyeongyeob Kim, Sol Lee, Min-Seok Koo, Sungmin Moon, Dachan Kim, Hyung-Ju Cho, Chang-Hoon Kim, Min-Seok Rha","doi":"10.1016/j.jaci.2026.02.019","DOIUrl":"10.1016/j.jaci.2026.02.019","url":null,"abstract":"<p><strong>Background: </strong>Since the coronavirus disease 2019 pandemic, local immune responses in the nasal mucosa have become an area of growing research interest. In this context, studies using noninvasive nasal brushing (NB) samples have increased markedly. However, it remains unclear whether NB samples accurately reflect the immune landscape of the nasal tissue (NT).</p><p><strong>Objective: </strong>A study was conducted to directly compare the cellular composition and immune cell responses of NB and NT samples.</p><p><strong>Methods: </strong>Paired NB and NT samples were collected from the same anatomic site. The frequency, phenotype, and effector functions of epithelial and immune cells were analyzed by single-cell RNA sequencing and flow cytometry.</p><p><strong>Results: </strong>NB samples contained a significantly higher proportion of epithelial cells than NT samples, while fibroblasts, endothelial cells, and B cells were significantly less abundant. Within the epithelial compartment, NB showed an enrichment of ciliated and secretory cells, whereas basal cells were less frequent and glandular basal/secretory cells were rarely detected. Additionally, CD103<sup>+</sup> tissue-resident memory T cells and CD56<sup>bright</sup> natural killer cells were more abundant in NB samples than in NT samples. Functional analyses revealed distinct T-cell effector profiles between the two sample types. Notably, severe acute respiratory syndrome coronavirus 2-specific T cells were significantly less frequent in NB samples than in NT.</p><p><strong>Conclusions: </strong>NB is well suited for sampling cells located near the epithelial surface but captures fewer cells from deeper mucosal layers. Additionally, NB samples display distinct T-cell effector profiles and virus-specific T-cell frequencies compared with NT. These findings highlight the importance of selecting sampling methods that align with the specific objectives of a study.</p>","PeriodicalId":14936,"journal":{"name":"Journal of Allergy and Clinical Immunology","volume":" ","pages":""},"PeriodicalIF":11.2,"publicationDate":"2026-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147316911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complement Component 3 Links Epithelial Remodeling and Macrophage Metabolic Reprogramming in Allergic Rhinitis 补体成分3与变应性鼻炎中上皮重塑和巨噬细胞代谢重编程相关
IF 14.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-25 DOI: 10.1016/j.jaci.2026.02.021
Xuan Yuan, Shaobing Xie, Liyuan Liu, Jiaxin Jia, Wenjing Gu, Yixiang Zeng, Hua Zhang, Weihong Jiang, Zhihai Xie, Peisong Gao
{"title":"Complement Component 3 Links Epithelial Remodeling and Macrophage Metabolic Reprogramming in Allergic Rhinitis","authors":"Xuan Yuan, Shaobing Xie, Liyuan Liu, Jiaxin Jia, Wenjing Gu, Yixiang Zeng, Hua Zhang, Weihong Jiang, Zhihai Xie, Peisong Gao","doi":"10.1016/j.jaci.2026.02.021","DOIUrl":"https://doi.org/10.1016/j.jaci.2026.02.021","url":null,"abstract":"","PeriodicalId":14936,"journal":{"name":"Journal of Allergy and Clinical Immunology","volume":"104 1","pages":""},"PeriodicalIF":14.2,"publicationDate":"2026-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147278979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Randomized Dose-Finding Study of Anti-KIT Barzolvolimab in Patients with Chronic Spontaneous Urticaria 抗kit Barzolvolimab治疗慢性自发性荨麻疹的随机剂量研究
IF 14.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-25 DOI: 10.1016/j.jaci.2026.02.018
Martin Metz, Essack Mitha, Jeffrey Leflein, Neetu Talreja, Maia Gotua, Dorota Krasowska, Jonny Peter, John Anderson, Diane Young, Margo Heath-Chiozzi, Elsa Paradise, Steven Greenberg, Jonathan A. Bernstein
{"title":"A Randomized Dose-Finding Study of Anti-KIT Barzolvolimab in Patients with Chronic Spontaneous Urticaria","authors":"Martin Metz, Essack Mitha, Jeffrey Leflein, Neetu Talreja, Maia Gotua, Dorota Krasowska, Jonny Peter, John Anderson, Diane Young, Margo Heath-Chiozzi, Elsa Paradise, Steven Greenberg, Jonathan A. Bernstein","doi":"10.1016/j.jaci.2026.02.018","DOIUrl":"https://doi.org/10.1016/j.jaci.2026.02.018","url":null,"abstract":"","PeriodicalId":14936,"journal":{"name":"Journal of Allergy and Clinical Immunology","volume":"294 1","pages":""},"PeriodicalIF":14.2,"publicationDate":"2026-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147278980","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-cell and spatial transcriptomics unveil myeloid–lymphoid crosstalk and the dermal immune niche underlying palmoplantar pustulosis 单细胞和空间转录组学揭示了掌足底脓疱病背后的髓淋巴串扰和皮肤免疫生态位
IF 14.2 1区 医学 Q1 ALLERGY Pub Date : 2026-02-24 DOI: 10.1016/j.jaci.2026.01.028
Hanjae Lee, Juyoung Lee, Hyeok Ahn, Kyunghyuk Park, Bukyung Cha, Cheol Lee, Ohsang Kwon, Seong Jin Jo, Jong-Il Kim
{"title":"Single-cell and spatial transcriptomics unveil myeloid–lymphoid crosstalk and the dermal immune niche underlying palmoplantar pustulosis","authors":"Hanjae Lee, Juyoung Lee, Hyeok Ahn, Kyunghyuk Park, Bukyung Cha, Cheol Lee, Ohsang Kwon, Seong Jin Jo, Jong-Il Kim","doi":"10.1016/j.jaci.2026.01.028","DOIUrl":"https://doi.org/10.1016/j.jaci.2026.01.028","url":null,"abstract":"","PeriodicalId":14936,"journal":{"name":"Journal of Allergy and Clinical Immunology","volume":"345 1","pages":""},"PeriodicalIF":14.2,"publicationDate":"2026-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147278986","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of Allergy and Clinical Immunology
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