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Protamine-Mediated Tangles Produce Extreme Deoxyribonucleic Acid Compaction 原胺介导的缠结会产生极度的脱氧核糖核酸压积
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-29 DOI: 10.1021/jacs.4c1246810.1021/jacs.4c12468
Vikhyaat Ahlawat, Anshika Dhiman, Hashini Ekanayake Mudiyanselage and Huan-Xiang Zhou*, 

In sperm cells, protamine replaces histones to compact DNA 10–20 times more than in somatic cells. To characterize the extreme compaction, we employed confocal microscopy and optical tweezers to determine the conformations and stability of protamine-bound λ-DNA. Confocal images show increasing compaction of λ-DNA at increasing protamine concentration. In the presence of protamine, single λ-DNA molecules form tangles that withstand forces strong enough (∼55 pN) for strand separation and shorten the contour length by up to 40% even at high forces, as well as bends and loops that rupture at 10–40 pN forces. Strand separation nucleates tangles, implicating protamine interactions with DNA bases. Molecular dynamics simulations show that Arg sidechains of protamine each form hydrogen bonds with multiple bases, frequently in the form of a wedge between the two strands of DNA. Protamine may participate in both local and higher-order chromatin organization, leading to extreme compaction and global transcription silencing.

在精子细胞中,原胺取代组蛋白压实DNA的程度是体细胞的10-20倍。为了描述这种极端压实的特征,我们使用共聚焦显微镜和光学镊子来确定与原胺结合的λ-DNA的构象和稳定性。共聚焦图像显示,随着原胺浓度的增加,λ-DNA 的压实程度也在增加。在有原胺存在的情况下,单个 λ-DNA 分子会形成缠结,这种缠结能承受足以导致链分离的强力(55 pN),即使在强力下也能将轮廓长度缩短 40%,还能形成在 10-40 pN 的力下断裂的弯曲和环。链分离会导致缠结,这与原胺与 DNA 碱基的相互作用有关。分子动力学模拟显示,原胺的氩侧链分别与多个碱基形成氢键,经常在 DNA 的两条链之间形成楔形。原胺可能参与局部和高阶染色质组织,导致极度压实和全局转录沉默。
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引用次数: 0
Cobalt Nitride-Implanted PtCo Intermetallic Nanocatalysts for Ultrahigh Fuel Cell Cathode Performance 氮化钴植入铂钴金属间纳米催化剂实现超高燃料电池阴极性能
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-29 DOI: 10.1021/jacs.4c0951410.1021/jacs.4c09514
Muhammad Irfansyah Maulana, Tae Hwan Jo, Ha-Young Lee, Chaehyeon Lee, Caleb Gyan-Barimah, Cheol-Hwan Shin, Jeong-Hoon Yu, Kug-Seung Lee, Seoin Back* and Jong-Sung Yu*, 

Stable and active oxygen reduction electrocatalysts are essential for practical fuel cells. Herein, we report a novel class of highly ordered platinum-cobalt (Pt-Co) alloys embedded with cobalt nitride. The intermetallic core–shell catalyst demonstrates an initial mass activity of 0.88 A mgPt–1 at 0.9 V with 71% retention after 30,000 potential cycles of an aggressive square-wave accelerated durability test and loses only 9% of its electrochemical surface area, far exceeding the US Department of Energy 2025 targets, with unprecedented stability and only a minimal voltage loss under practical fuel cell operating conditions. We discover that regulating the atomic ordering in the core results in an optimal lattice configuration that accelerates the oxygen reduction kinetics. The presence of cobalt nitride decorated within PtCo superlattices guarantees a larger barrier to Co dissolution, leading to the excellent endurance of the electrocatalysts. This work brings up a transformative structural engineering strategy for rationally designing high-performing Pt-based catalysts with a unique atomic configuration for broad practical uses in energy conversion technology.

稳定而活跃的氧还原电催化剂对实用燃料电池至关重要。在此,我们报告了一类嵌入氮化钴的新型高有序铂-钴(Pt-Co)合金。这种金属间核壳催化剂在 0.9 V 电压下的初始质量活性为 0.88 A mgPt-1,在激烈的方波加速耐久性测试中经过 30,000 个电位循环后仍能保持 71% 的活性,其电化学表面积损失仅为 9%,远远超过了美国能源部 2025 年的目标,而且在实际燃料电池工作条件下具有前所未有的稳定性,电压损失极小。我们发现,调节内核中的原子排序可产生最佳晶格配置,从而加速氧还原动力学。铂钴超晶格中氮化钴装饰的存在保证了更大的钴溶解屏障,从而使电催化剂具有出色的耐久性。这项研究为合理设计具有独特原子构型的高性能铂基催化剂提供了一种变革性的结构工程策略,可广泛应用于能源转换技术领域。
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引用次数: 0
Magnetoplasmonic Triblock Nanorods for Collective Linear Dichroism 用于集体线性分色的磁光电三嵌段纳米棒
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-29 DOI: 10.1021/jacs.4c1137710.1021/jacs.4c11377
Jinxing Chen*, Ji Feng, Panpan Xu and Yadong Yin*, 

Polarized light detection is crucial for advancements in optical imaging, positioning, and obstacle avoidance systems. While optical nanomaterials sensitive to polarization are well-established, the ability to align these materials remains a significant challenge. Here, we introduce Au–Fe3O4–Au triblock nanorods as a novel solution. Synthesized via a space-confined seeded growth method, these magnetoplasmonic nanocomposites uniquely combine the strong polarization capabilities of Au nanorods with the magnetic alignment properties of Fe3O4 nanorods. This architecture results in exceptional collective linear dichroism, achieving a polarization ratio of approximately 14 at the device level. Our nanorods exhibit high detection sensitivity and laser damage resistance, positioning them as a promising platform for developing advanced optical devices.

偏振光检测对于光学成像、定位和避障系统的发展至关重要。虽然对偏振敏感的光学纳米材料已经得到证实,但这些材料的对准能力仍然是一项重大挑战。在这里,我们引入了 Au-Fe3O4-Au 三嵌段纳米棒作为一种新型解决方案。这些磁致共振纳米复合材料通过空间约束种子生长法合成,将金纳米棒的强极化能力与 Fe3O4 纳米棒的磁对准特性独特地结合在一起。这种结构产生了卓越的集体线性二色性,在器件级实现了约 14 的极化率。我们的纳米棒具有很高的检测灵敏度和抗激光损伤能力,是开发先进光学设备的理想平台。
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引用次数: 0
Photobiocatalytic Platform for the Efficient Enantio-Divergent Synthesis of β-Fluoromethylated Ketones 高效对映-歧化合成 β-氟甲基化酮的光生物催化平台
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-29 DOI: 10.1021/jacs.4c1044110.1021/jacs.4c10441
Yuan-Yang Guo*, Ze-Hua Tian, Linghong Zhang, Yu-Chen Han, Bei-Bei Zhang, Qing Xing, Tianju Shao, Yang Liu and Zhiyong Jiang*, 

β-Fluoromethyl (CH2F, CHF2, and CF3)-substituted chiral ketones are essential moieties and are vital building blocks in pharmaceutical and agrochemistry. However, general and convenient methods for enantio-diverse access to diverse β-fluoromethylated ketones are lacking, hindering the further development of these functional moieties. In this study, we developed an ene-reductase-based photobiocatalytic platform for efficient synthesis of enantio-divergent β-fluoromethylated chiral ketones. Our method highlights substrate-type diversity, excellent enantioselectivity, enzymatic enantio-divergent synthesis, as well as a dicyanopyrazine (DPZ)-type photosensitizer for biocompatible olefin E/Z isomerization in enzymatic stereoconvergent olefin asymmetric reduction, thereby providing a general photobiocatalytic solution to diverse β-fluoromethylated chiral ketones.

β-氟甲基(CH2F、CHF2 和 CF3)取代的手性酮是制药和农用化学品的重要组成部分。然而,目前还缺乏对映体多样化获取各种 β-氟甲基化酮的通用便捷方法,这阻碍了这些功能性分子的进一步发展。在本研究中,我们开发了一种基于烯还原酶的光生物催化平台,用于高效合成对映体不同的β-氟甲基手性酮。我们的方法突出了底物类型的多样性、优异的对映选择性、酶促对映发散合成,以及在酶促立体转化烯烃不对称还原中用于生物兼容烯烃 E/Z 异构化的双氰基吡嗪(DPZ)型光敏剂,从而为多种 β-氟甲基手性酮的合成提供了一种通用的光生物催化解决方案。
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引用次数: 0
A Carborane-Derived Proton-Coupled Electron Transfer Reagent 硼烷衍生质子耦合电子转移试剂
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-28 DOI: 10.1021/jacs.4c0900710.1021/jacs.4c09007
Enric H. Adillon,  and , Jonas C. Peters*, 

Reagents capable of concerted proton–electron transfer (CPET) reactions can access reaction pathways with lower reaction barriers compared to stepwise pathways involving electron transfer (ET) and proton transfer (PT). To realize reductive multielectron/proton transformations involving CPET, one approach that has shown recent promise involves coupling a cobaltocene ET site with a protonated arylamine Brønsted acid PT site. This strategy colocalizes the electron/proton in a matter compatible with a CPET step and net reductive electrocatalysis. To probe the generality of such an approach a class of C,C′-diaryl-o-carboranes is herein explored as a conceptual substitute for the cobaltocene subunit, with an arylamine linkage still serving as a colocalized Brønsted base suitable for protonation. The featured o-carborane (PhCbPhN) can be reduced and protonated to generate an N–H bond with a weak effective bond dissociation free energy (BDFEeff) of 31 kcal/mol, estimated with measured thermodynamic data. This N–H bond is among the lowest measured element–H bonds for analyzed nonmetal compounds. Distinct solid-state crystal structures of the one- and two-electron reduced forms of diaryl-o-carboranes are disclosed to gain insight into their well-behaved redox characteristics. The singly reduced, protonated form of the diaryl-o-carborane can mediate multi-ET/PT reductions of azoarenes, diphenylfumarate, and nitrotoluene. In contrast to the aforementioned cobaltocene system, available mechanistic data disclosed herein support these reactions occurring by a rate-limiting ET step and not a CPET step. A relevant hydrogen evolution reaction (HER) reaction was also studied, with data pointing to a PT/ET/PT mechanism, where the reduced carborane core is itself highly stable to protonation.

与涉及电子转移(ET)和质子转移(PT)的分步反应途径相比,能够进行协同质子-电子转移(CPET)反应的试剂可以进入反应壁垒较低的反应途径。为了实现涉及 CPET 的还原性多电子/质子转移,一种最近显示出前景的方法是将二茂钴 ET 位点与质子化芳胺布氏酸 PT 位点耦合。这种策略将电子/质子集中在与 CPET 步骤和净还原电催化兼容的物质中。为了探究这种方法的通用性,本文探讨了一类 C,C′-二芳基邻硼烷,作为二茂钴亚基的概念替代物,其芳基胺连接仍可作为适合质子化的共位布氏基。特征邻碳环(PhCbPhN)可被还原和质子化,生成一个 N-H 键,其弱有效键解离自由能(BDFEeff)为 31 kcal/mol(根据测量的热力学数据估算)。这种 N-H 键是所分析的非金属化合物中测得的最低元素-H 键之一。本研究公开了二芳基邻硼烷的单电子还原型和双电子还原型的不同固态晶体结构,以深入了解它们良好的氧化还原特性。二芳基邻硼烷的单还原质子化形式可以介导偶氮烯、富马酸二苯酯和硝基甲苯的多ET/PT 还原。与上述二茂钴体系不同的是,本文披露的现有机理数据支持这些反应是通过限速 ET 步骤而非 CPET 步骤发生的。我们还研究了一个相关的氢进化反应(HER),数据表明其机理为 PT/ET/PT,其中还原的碳硼烷核心本身对质子化非常稳定。
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引用次数: 0
Lipidation Engineering in Daptomycin Biosynthesis 达托霉素生物合成中的脂化工程
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-28 DOI: 10.1021/jacs.4c1096610.1021/jacs.4c10966
Chang-Hun Ji, Sehong Park, Kunwoo Lee, Hyun-Woo Je and Hahk-Soo Kang*, 

Lipopeptides are an important family of natural products, some of which are clinically used as antibiotics to treat multidrug-resistant pathogens. Although the lipid moieties play a crucial role in balancing antibacterial activity and hemolytic toxicity, modifying the lipid moieties has been challenging due to the complexity of the lipidation process in lipopeptide biosynthesis. Here, we show that the lipid profile can be altered by engineering both secondary and primary metabolisms, using daptomycin as an example. First, swapping the fatty acyl AMP ligase (FAAL) gene dptF with foreign FAAL homologs improved the fatty acyl specificity of the lipidation process for decanoic acid. Then, the introduction of Mycobacterium type I fatty acid synthase operon (MvFAS-Ib/MvAcpS) and Cryptosporidium thioesterase (CpTEII) enriched the fatty acid pool with decanoic acid in Streptomyces roseosporus. The engineered fatty acid metabolism eliminates the need for external decanoic acid supplementation by enabling S. roseosporus to biosynthesize decanoic acid. By complete engineering of the lipidation process, we achieved, for the first time, high-purity, natural production of daptomycin. The lipidation engineering approach we demonstrate here lays the foundation for the lipidation control in lipopeptide biosynthesis.

脂肽是一个重要的天然产品家族,其中一些在临床上被用作治疗耐多药病原体的抗生素。虽然脂质分子在平衡抗菌活性和溶血性毒性方面起着至关重要的作用,但由于脂肽生物合成过程中脂化过程的复杂性,改造脂质分子一直是一项挑战。在这里,我们以达托霉素为例,展示了通过二级和一级代谢工程可以改变脂质概况。首先,将脂肪酰基AMP连接酶(FAAL)基因dptF与外来的FAAL同源基因互换,改善了癸酸脂化过程中脂肪酰基的特异性。然后,引入分枝杆菌 I 型脂肪酸合成酶操作子(MvFAS-Ib/MvAcpS)和隐孢子虫硫酯酶(CpTEII),使玫瑰孢链霉菌的脂肪酸池中富含癸酸。工程化脂肪酸代谢使玫瑰孢链霉能够生物合成癸酸,从而无需外部补充癸酸。通过对脂化过程的完全工程化,我们首次实现了高纯度、天然的达托霉素生产。我们在此展示的脂化工程方法为脂肽生物合成中的脂化控制奠定了基础。
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引用次数: 0
Programmable Plasma-Microdroplet Cascade Reactions for Multicomponent Systems 多组分系统的可编程等离子体-微滴级联反应
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-28 DOI: 10.1021/jacs.4c0705310.1021/jacs.4c07053
Alexander J. Grooms, Isabella M. Marcelo, Robert T. Huttner and Abraham K. Badu-Tawiah*, 

The concept of programmable cascade reactions in charged microdroplets is introduced using carbon–carbon (C–C) bond formation via uncatalyzed Michael addition in a three-tier study culminating in programmable Hantzsch multicomponent, multistep reactions. In situ generated reactive oxygen species (ROS) from nonthermal plasma discharge are fused with charged water microdroplets (devoid of ROS) in real time for accelerated chemical reactions. This plasma-microdroplet fusion platform utilizing a coaxial spray configuration enabled product selection while avoiding unwanted side reactions. Hydrogen abstraction via ROS facilitated the formation of enolate anions without strong base use. Reaction enhancement factors >103 were calculated for plasma-microdroplet fusion versus microdroplet-only reactions. The platform programmability was showcased through (i) uncatalyzed 1,4-Michael addition of α,β-unsaturated carbonyls, (ii) novel C–C bond formation via the use of pro-electrophilic amine and alcohol substrates─activated through collisions in the microdroplet environment to serve as Michael acceptors, and (iii) selective Hantzsch cascade reaction with cross-coupling products, avoiding side reactions including N-alkylation and self-coupling product formation. Milligram quantity product collection is achieved, showcasing plasma-microdroplet fusion as an effective tool for preparative-scale synthesis. Thus, the controlled generation of ROS via plasma discharge during charged water microdroplet evolution establishes a green synthetic method for uncatalyzed C–C bond formation.

在一项三级研究中,通过未催化的迈克尔加成法形成碳-碳(C-C)键,引入了带电微滴中可编程级联反应的概念,最终形成了可编程的汉茨奇多组分、多步骤反应。非热等离子体放电在原位产生的活性氧(ROS)与带电水微滴(不含 ROS)实时融合,以加速化学反应。这种等离子体与微滴融合平台采用同轴喷雾配置,既能选择产品,又能避免不必要的副反应。通过 ROS 进行的氢气抽取促进了烯醇阴离子的形成,而无需使用强碱。计算出了等离子体-微液滴融合与纯微液滴反应的反应增强因子 103。该平台的可编程性通过以下几个方面得到了展示:(i) α、β-不饱和羰基的非催化 1,4-Michael 加成反应;(ii) 通过使用亲电性胺和醇底物--在微液滴环境中通过碰撞激活作为 Michael 受体--形成新型 C-C 键;(iii) 与交叉耦合产物进行选择性 Hantzsch 级联反应,避免了包括 N- 烷基化和自偶联产物形成在内的副反应。实现了毫克量级的产物收集,展示了等离子体-微滴融合作为制备规模合成的有效工具。因此,在带电水微滴演化过程中通过等离子体放电可控地生成 ROS,为非催化 C-C 键的形成建立了一种绿色合成方法。
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引用次数: 0
Giant Uniaxial Magnetocrystalline Anisotropy in SmCrGe3 SmCrGe3 中的巨型单轴磁晶各向异性
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-28 DOI: 10.1021/jacs.4c1005610.1021/jacs.4c10056
Mingyu Xu, Yongbin Lee, Xianglin Ke, Min-Chul Kang, Matt Boswell, Sergey L. Bud’ko, Lin Zhou, Liqin Ke, Mingda Li, Paul C. Canfield* and Weiwei Xie*, 

Magnetic anisotropy is a crucial characteristic for enhancing the spintronic device performance. The synthesis of SmCrGe3 single crystals through a high-temperature solution method has led to the determination of uniaxial magnetocrystalline anisotropy. Phase verification was achieved by using scanning transmission electron microscopy (STEM), powder, and single-crystal X-ray diffraction techniques. Electrical transport and specific heat measurements indicate a Curie temperature (TC) of approximately 160 K, while magnetization measurements were utilized to determine the anisotropy fields and constants. Curie–Weiss fitting applied to magnetization data suggests the contribution of both Sm and Cr in the paramagnetic phase. Additionally, density functional theory (DFT) calculations explored the electronic structures and magnetic properties of SmCrGe3, revealing a significant easy-axis single-ion Sm magnetocrystalline anisotropy of 16 meV/fu. Based on the magnetization measurements, easy-axis magnetocrystalline anisotropy at 20 K is 13 meV/fu.

磁各向异性是提高自旋电子器件性能的关键特性。通过高温溶液法合成 SmCrGe3 单晶,确定了单轴磁晶各向异性。利用扫描透射电子显微镜(STEM)、粉末和单晶 X 射线衍射技术实现了相位验证。电传输和比热测量表明居里温度 (TC) 约为 160 K,而磁化测量则用于确定各向异性场和常数。对磁化数据进行居里-魏斯拟合表明,顺磁相中的Sm和Cr都有贡献。此外,密度泛函理论(DFT)计算探索了 SmCrGe3 的电子结构和磁性能,揭示了 16 meV/fu 的显著易轴单离子 Sm 磁晶各向异性。根据磁化测量结果,20 K 时的易轴磁晶各向异性为 13 meV/fu。
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引用次数: 0
Arylthianthrenium Salts for Triplet Energy Transfer Catalysis 用于三重能量转移催化的芳基噻蒽盐
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-28 DOI: 10.1021/jacs.4c1109910.1021/jacs.4c11099
Yuan Cai, Triptesh Kumar Roy, Till J. B. Zähringer, Beatrice Lansbergen, Christoph Kerzig* and Tobias Ritter*, 

Sigma bond cleavage through electronically excited states allows synthetically useful transformations with two radical species. Direct excitation of simple aryl halides to form both aryl and halogen radicals necessitates UV-C light, so undesired side reactions are often observed and specific equipment is required. Moreover, only aryl halides with extended π systems and comparatively low triplet energy are applicable to synthetically useful energy transfer catalysis. Here we show the conceptual advantages of arylthianthrenium salts (ArTTs) for energy transfer catalysis with high energy efficiency compared to conventional aryl (pseudo)halides and their utility in arylation reactions of ethylene. The fundamental advance is enabled by the low triplet energy of ArTTs that may originate in large part from the electronic interplay between the distinct sulfur atoms in the tricyclic thianthrene scaffold, which is not accessible in either simple (pseudo)halides or other conventional sulfonium salts.

通过电子激发态进行的西格玛键裂解可以使两种自由基发生有用的合成转化。直接激发简单的芳基卤化物以形成芳基和卤素自由基需要紫外-C 光,因此经常会观察到不希望发生的副反应,并且需要特定的设备。此外,只有具有扩展 π 系统和相对较低三重态能量的芳基卤化物才能用于合成有用的能量转移催化。与传统的芳基(假)卤化物相比,芳基噻蒽盐(ArTTs)在能量转移催化方面具有高能效的概念优势,并可用于乙烯的芳基化反应。ArTTs 的三重能较低,这在很大程度上可能是由于三环噻蒽支架中不同硫原子之间的电子相互作用促成的,而简单(假)卤化物或其他传统锍盐都无法获得这种电子相互作用。
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引用次数: 0
Impact of Cavity Length Non-uniformity on Reaction Rate Extraction in Strong Coupling Experiments 空腔长度不均匀对强耦合实验中反应速率提取的影响
IF 14.4 3区 化学 Q1 Chemistry Pub Date : 2024-10-28 DOI: 10.1021/jacs.4c1226910.1021/jacs.4c12269
Michael A. Michon,  and , Blake S. Simpkins*, 

Reports of altered chemical phenomena under vibrational strong coupling, including reaction rates, product distributions, intermolecular forces, and cavity-mediated vibrational energy transfer, have been met with a great deal of skepticism due to several irreproducible results and the lack of an accepted theoretical framework. In this work, we add some insight by identifying a UV–vis measurement artifact that distorts observed absorption peak positions, amplitudes, and consequently, chemical reaction rates extracted in optical microcavities. We predict and characterize the behavior of this artifact using the Transfer Matrix (TM) method and confirm its presence experimentally. We then present a correction technique whereby an effective molar absorption coefficient is assigned to an absorbing species within the cavity. These revelations have important implications for many existing examples of cavity-modified chemistry and establishing best practices for carrying out robust future investigations.

有关振动强耦合作用下化学现象改变的报告,包括反应速率、产物分布、分子间作用力和空腔介导的振动能量转移等,由于存在一些不可再现的结果和缺乏公认的理论框架,一直受到很多质疑。在这项研究中,我们发现了一种紫外可见光测量假象,它扭曲了在光学微腔中观察到的吸收峰位置、振幅以及由此提取的化学反应速率,从而增加了我们的洞察力。我们使用转移矩阵 (TM) 方法预测并描述了这种假象的行为,并通过实验证实了它的存在。然后,我们提出了一种校正技术,通过这种技术,可以为空腔内的吸收物种分配一个有效的摩尔吸收系数。这些发现对许多现有的空腔修饰化学实例具有重要意义,并为今后开展有力的研究确立了最佳实践。
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引用次数: 0
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ACS Combinatorial Science
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