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RNA m5C methylation orchestrates BLCA progression via macrophage reprogramming RNA m5C甲基化通过巨噬细胞重编程协调BLCA进展
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-05 DOI: 10.1111/jcmm.17826
Dali Yan, Yongsong Xie, Liyuan Huang, Yi Zhang, Runhuan Gu, Huaibing Xie, Xing Huang, Hao Luo
Recently, epigenetics showed essential roles in tumour microenvironment (TME) and immunotherapy response, however, the functions of RNA 5‐methylcytosine (m5C) modification in TME remains unknown. According to 13 m5C regulators, we evaluated 412 BLCA patients from The Cancer Genome Atlas (TCGA) database. The m5C score was constructed by unsupervised clustering analysis and principal component analysis (PCA) algorithms. Gene set variation analysis (GSVA), ESTIMATE algorithm, and immunohistochemical (IHC) staining were performed. Macrophage chemotaxis assay was used to assess the M2 macrophages. Among the 412 patients, the frequency of mutation was 13%. m5C regulators was expressed significantly in BLCA tissue compared with normal tissue. Then, two m5C methylation modification patterns were identified with dissimilar TME cell infiltration patterns. The C1 alteration pattern in the m5C cluster was connected with better survival. In addition, we found that NSUN6 was highly correlated with recruitment of macrophages via bioinformatics and IHC. Further experiment validated that NSUN6 promoted HDAC10 expression by mediating m5C methylation, inhibited the transcription of macrophage‐associated chemokines and thus inhibited the recruitment of M2 macrophages. The m5C score constructed by m5C modification pattern showed that high m5C score group had a better prognosis. This study uncovered the significant roles of m5C modifications in modulating the TME and indicated that NSUN6 could inhibit the recruitment of M2 macrophages via m5C methylation, which provided novel insight into epigenetic regulation of TME and clinical suggestions for immunotherapeutic strategies.
近年来,表观遗传学在肿瘤微环境(TME)和免疫治疗反应中发挥了重要作用,然而,RNA 5-甲基胞嘧啶(m5C)修饰在TME中的功能尚不清楚。根据13个m5C调节因子,我们评估了来自癌症基因组图谱(TCGA)数据库的412名BLCA患者。m5C评分采用无监督聚类分析和主成分分析(PCA)算法构建。进行基因集变异分析(GSVA)、ESTIMATE算法和免疫组化(IHC)染色。采用巨噬细胞趋化试验评估M2巨噬细胞。在412例患者中,突变频率为13%。与正常组织相比,m5C调节因子在BLCA组织中表达显著。然后,鉴定出两种m5C甲基化修饰模式具有不同的TME细胞浸润模式。m5C群的C1改变模式与更好的存活率有关。此外,我们通过生物信息学和免疫组化发现NSUN6与巨噬细胞的募集高度相关。进一步实验证实NSUN6通过介导m5C甲基化促进HDAC10的表达,抑制巨噬细胞相关趋化因子的转录,从而抑制M2巨噬细胞的募集。m5C修改模式构建的m5C评分显示,m5C评分高组预后较好。本研究揭示了m5C修饰在TME调控中的重要作用,并表明NSUN6可以通过m5C甲基化抑制M2巨噬细胞的募集,这为TME的表观遗传调控提供了新的见解,并为临床免疫治疗策略提供了建议。
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引用次数: 0
Drug screening of α-amylase inhibitors as candidates for treating diabetes α-淀粉酶抑制剂治疗糖尿病的候选药物筛选
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-04 DOI: 10.1111/jcmm.17831
Meryem Alp, Alechania Misturini, German Sastre, Maria Gálvez-Llompart

In the present study, the identification of potential α-amylase inhibitors is explored as a potential strategy for treating type-2 diabetes mellitus. A computationally driven approach using molecular docking was employed to search for new α-amylase inhibitors. The interactions of potential drugs with the enzyme's active site were investigated and compared with the contacts established by acarbose (a reference drug for α-amylase inhibition) in the crystallographic structure 1B2Y. For this active site characterization, both molecular docking and molecular dynamics simulations were performed, and the residues involved in the α-amylase–acarbose complex were considered to analyse the potential drug's interaction with the enzyme. Two potential α-amylase inhibitors (AN-153I105594 and AN-153I104845) have been selected following this computational strategy. Both compounds established a large number of interactions with key binding site α-amylase amino acids and obtained a comparable docking score concerning the reference drug (acarbose). Aiming to further analyse candidates' properties, their ADME (absorption, distribution, metabolism, excretion) parameters, druglikeness, organ toxicity, toxicological endpoints and median lethal dose (LD50) were estimated. Overall estimations are promising for both candidates, and in silico toxicity predictions suggest that a low toxicity should be expected.

在本研究中,鉴定潜在的α-淀粉酶抑制剂作为治疗2型糖尿病的潜在策略。采用分子对接的计算驱动方法寻找新的α-淀粉酶抑制剂。研究了潜在药物与该酶活性位点的相互作用,并与阿卡波糖(抑制α-淀粉酶的参考药物)在晶体结构1B2Y中建立的联系进行了比较。为了表征该活性位点,我们进行了分子对接和分子动力学模拟,并考虑α-淀粉酶-阿卡波糖复合物中涉及的残基来分析药物与酶的潜在相互作用。两种潜在的α-淀粉酶抑制剂(AN-153I105594和AN-153I104845)根据这种计算策略被选中。这两种化合物都与关键结合位点α-淀粉酶氨基酸建立了大量相互作用,并获得了与参比药物(阿卡波糖)相当的对接分数。为了进一步分析候选药物的性质,我们估计了它们的ADME(吸收、分布、代谢、排泄)参数、药物相似性、器官毒性、毒理学终点和中位致死剂量(LD50)。对这两种候选物的总体估计是有希望的,在硅毒性预测中表明,应该期望低毒性。
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引用次数: 0
Correction to RDM1 promotes critical processes in breast cancer tumorigenesis 纠正RDM1促进乳腺癌肿瘤发生的关键过程
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-04 DOI: 10.1111/jcmm.17752

In Y Chen et al1, the published article contains errors in Figure 2G. The corrected Figure 2G is below. The authors confirmed that the conclusion of this article remain unchanged.

在Y Chen et al1中,发表的文章包含图2G中的错误。更正后的图2G如下:作者确认这篇文章的结论没有改变。
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引用次数: 0
Correction to Down-regulation of miR-200c attenuates AngII-induced cardiac hypertrophy via targeting the MLCK-mediated pathway miR-200c下调的纠正通过靶向mlck介导的途径减轻血管内皮细胞诱导的心肌肥厚
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-03 DOI: 10.1111/jcmm.17724

In Hu et al.,1 the published article contains errors in Figure 4E,F. The figure of group inhibitor + PBS in Figure 4E was mis-uploaded. The corrected Figure 4 is below. The authors confirmed that all results and conclusions of this article remain unchanged.

在Hu et al.,1发表的文章中包含图4E、F中的错误。图4E中组抑制剂+ PBS的图上传错误。更正后的图4如下所示。作者确认本文的所有结果和结论保持不变。
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引用次数: 0
A negative feedback loop between KLF9 and the EMT program dictates metastasis of hepatocellular carcinoma KLF9和EMT程序之间的负反馈回路决定了肝细胞癌的转移
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-03 DOI: 10.1111/jcmm.17823
Tao Wang, Limin Feng, Zhong Shi, Lixian Yang, Xiaofu Yu, Jinsong Wu, Jirui Sun, Jinku Zhang, Yuxiong Feng, Weilin Wang

Metastasis is the primary cause of death of hepatocellular carcinoma (HCC), while the mechanism underlying this severe disease remains largely unclear. The Kruppel-like factor (KLF) family is one of the largest transcription factor families that control multiple physiologic and pathologic processes by governing the cellular transcriptome. To identify metastatic regulators of HCC, we conducted gene expression profiling on the MHCC97 cell series, a set of subclones of the original MHCC97 that was established by in vivo metastasis selection therefore harbouring differential metastatic capacities. We found that the expression of KLF9, a member of the KLF family, was dramatically repressed in the metastatic progeny clone of the MHCC97 cells. Functional studies revealed overexpression of KLF9 suppressed HCC migration in vitro and metastasis in vivo, while knockdown of KLF9 was sufficient to promote cell migration and metastasis accordingly. Mechanistically, we found the expression of KLF9 can reverse the pro-metastatic epithelial-mesenchymal transition (EMT) program via direct binding to the promoter regions of essential mesenchymal genes, thus repressing their expression. Interestingly, we further revealed that KLF9 was, in turn, directly suppressed by a mesenchymal transcription factor Slug, suggesting an intriguing negative feedback loop between KLF9 and the EMT program. Using clinical samples, we found that KLF9 was not only downregulated in HCC tissue compared to its normal counterparts but also further reduced in the HCC samples of whom had developed metastatic lesions. Together, we established a critical transcription factor that represses HCC metastasis, which is clinically and mechanically significant in HCC therapies.

转移是肝细胞癌(HCC)死亡的主要原因,但这种严重疾病的机制仍不清楚。kruppel样因子(KLF)家族是最大的转录因子家族之一,通过调控细胞转录组来控制多种生理和病理过程。为了确定HCC的转移调节因子,我们对MHCC97细胞系列进行了基因表达谱分析,MHCC97是原始MHCC97的一组亚克隆,通过体内转移选择建立,因此具有不同的转移能力。我们发现KLF9 (KLF家族的一员)的表达在MHCC97细胞的转移子代克隆中被显著抑制。功能研究显示,过表达KLF9可抑制HCC体外迁移和体内转移,而敲低KLF9则足以促进细胞迁移和转移。在机制上,我们发现KLF9的表达可以通过直接结合基本间充质基因的启动子区域来逆转促转移上皮-间充质转化(EMT)程序,从而抑制其表达。有趣的是,我们进一步发现KLF9反过来又被间充质转录因子Slug直接抑制,这表明KLF9和EMT程序之间存在一个有趣的负反馈循环。通过临床样本,我们发现,与正常对照物相比,KLF9不仅在HCC组织中下调,而且在发生转移性病变的HCC样本中进一步降低。我们共同建立了一个抑制HCC转移的关键转录因子,这在HCC治疗中具有临床和机械意义。
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引用次数: 1
Pathogenic copy number variations are associated with foetal short femur length in a tertiary referral centre study 致病性拷贝数变异与胎儿股骨短长度有关在三级转诊中心的研究
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-03 DOI: 10.1111/jcmm.17821
Meiying Cai, Yanting Que, Meihuan Chen, Min Zhang, Hailong Huang, Liangpu Xu, Na Lin

Shortened foetal femur length (FL) is a common abnormal phenotype that often causes anxiety in pregnant women, and standard clinical treatments remain unavailable. We investigated the clinical characteristics, genetic aetiology and obstetric pregnancy outcomes of foetuses with short FL and provided a reference for perinatal management of such cases. Chromosomal microarray analysis was used to analyse the copy number variations (CNV) in short FL foetuses. Of the 218 foetuses with short FL, 33 foetuses exhibited abnormal CNVs, including 19 with pathogenic CNVs and 14 with variations of uncertain clinical significance. Of the 19 foetuses with pathogenic CNVs, four had aneuploidy, 14 had deletions/duplications, and one had pathogenic uniparental diploidy. The 7q11.23 microdeletion was detected in three foetuses. The severity of short FL was not associated with the rate of pathogenic CNVs. The duration of short FL for the intrauterine ultrasound phenotype in foetuses carrying a pathogenic CNV was independent of the gestational age. Further, maternal age was not associated with the incidence of foetal pathogenic CNVs. Adverse pregnancy outcomes occurred in 77 cases, including termination of pregnancy in 63 cases, postnatal dwarfed foetuses with intellectual disability in 11 cases, and three deaths within 3 months of birth. Pathogenic CNVs closely related to foetal short FL were identified, among which the 7q11.23 microdeletion was highly associated with short FL development. This study provides a reference for the perinatal management of foetuses with short FL.

缩短的胎儿股骨长度(FL)是一种常见的异常表型,经常导致孕妇焦虑,标准的临床治疗仍然没有。探讨短FL胎儿的临床特点、遗传病因及产科妊娠结局,为此类病例的围生期处理提供参考。采用染色体微阵列分析方法分析短FL胎儿拷贝数变异(CNV)。218例短FL胎儿中,33例胎儿出现异常CNVs,其中19例为致病性CNVs, 14例临床意义不确定。在19例具有致病性CNVs的胎儿中,4例为非整倍体,14例为缺失/重复,1例为致病性单倍体。在三个胎儿中检测到7q11.23微缺失。短FL的严重程度与致病性CNVs的发生率无关。携带致病性CNV的胎儿宫内超声表型的短FL持续时间与胎龄无关。此外,母亲年龄与胎儿致病性CNVs的发生率无关。77例发生不良妊娠结局,包括63例终止妊娠,11例出现智力残疾的产后侏儒胎儿,3例在出生后3个月内死亡。鉴定出与胎儿短FL密切相关的致病性CNVs,其中7q11.23微缺失与短FL发育高度相关。本研究为短FL胎儿的围生期处理提供参考。
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引用次数: 0
MALAT1/miR-185-5p mediated high glucose-induced oxidative stress, mitochondrial injury and cardiomyocyte apoptosis via the RhoA/ROCK pathway MALAT1/miR-185-5p通过RhoA/ROCK途径介导高糖诱导的氧化应激、线粒体损伤和心肌细胞凋亡
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-03 DOI: 10.1111/jcmm.17835
Ting Wang, Na Li, Lingling Yuan, Mengnan Zhao, Guizhi Li, Yanxia Chen, Hong Zhou

To explore the underlying mechanism of lncRNA MALAT1 in the pathogenesis of diabetic cardiomyopathy (DCM). DCM models were confirmed in db/db mice. MiRNAs in myocardium were detected by miRNA sequencing. The interactions of miR-185-5p with MALAT1 and RhoA were validated by dual-luciferase reporter assays. Primary neonatal cardiomyocytes were cultured with 5.5 or 30 mmol/L D-glucose (HG) in the presence or absence of MALAT1-shRNA and fasudil, a ROCK inhibitor. MALAT1 and miR-185-5p expression were determined by real-time quantitative PCR. The apoptotic cardiomyocytes were evaluated using flow cytometry and TUNEL staining. SOD activity and MDA contents were measured. The ROCK activity, phosphorylation of Drp1S616, mitofusin 2 and apoptosis-related proteins were analysed by Western blotting. Mitochondrial membrane potential was examined by JC-1. MALAT1 was significantly up-regulated while miR-185-5p was down-regulated in myocardium of db/db mice and HG-induced cardiomyocytes. MALAT1 regulated RhoA/ROCK pathway via sponging miR-185-5p in cardiomyocytes in HG. Knockdown of MALAT1 and fasudil all inhibited HG-induced oxidative stress, and alleviated imbalance of mitochondrial dynamics and mitochondrial dysfunction, accompanied by reduced cardiomyocyte apoptosis. MALAT1 activated the RhoA/ROCK pathway via sponging miR-185-5p and mediated HG-induced oxidative stress, mitochondrial damage and apoptosis of cardiomyocytes in mice.

探讨lncRNA MALAT1在糖尿病性心肌病(DCM)发病中的潜在机制。在db/db小鼠中建立DCM模型。通过miRNA测序检测心肌组织的miRNA。通过双荧光素酶报告基因试验验证了miR-185-5p与MALAT1和RhoA的相互作用。在存在或不存在MALAT1-shRNA和法舒地尔(一种ROCK抑制剂)的情况下,用5.5或30 mmol/L的d -葡萄糖(HG)培养初生新生儿心肌细胞。实时定量PCR检测MALAT1和miR-185-5p的表达。流式细胞术和TUNEL染色检测心肌细胞凋亡情况。测定SOD活性和MDA含量。Western blotting检测ROCK活性、Drp1S616、mitofusin 2和凋亡相关蛋白的磷酸化水平。JC-1检测线粒体膜电位。在db/db小鼠心肌和hg诱导的心肌细胞中,MALAT1显著上调,miR-185-5p下调。MALAT1通过海绵化miR-185-5p调控HG心肌细胞中的RhoA/ROCK通路,敲低MALAT1和法舒地尔均可抑制HG诱导的氧化应激,缓解线粒体动力学失衡和线粒体功能障碍,同时减少心肌细胞凋亡。MALAT1通过海绵miR-185-5p激活RhoA/ROCK通路,介导hg诱导的小鼠心肌细胞氧化应激、线粒体损伤和凋亡。
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引用次数: 1
LncRNA-HOTAIR promotes endothelial cell pyroptosis by regulating the miR-22/NLRP3 axis in hyperuricemia LncRNA-HOTAIR通过调节miR-22/NLRP3轴在高尿酸血症中促进内皮细胞热亡
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-07-02 DOI: 10.1111/jcmm.17777

In Chi et al.,1 the published article contains errors in Figures 3 and 8. The bar-graph (Figure 3F) was accidentally misused as Figure 3G. The immunofluorescence picture of the control group (Figure 2G) was accidentally misused in shHOTAIR group (Figure 8B). The corrected figures and their legends are shown below. The authors confirmed all results and conclusions of this article remain unchanged.

在Chi et al.,1发表的文章中包含图3和图8中的错误。条形图(图3F)被误用为图3G。shHOTAIR组不小心误用了对照组(图2G)的免疫荧光图(图8B)。更正后的数字及其图例如下所示。作者确认本文的所有结果和结论保持不变。
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引用次数: 0
GP-2250, a novel anticancer agent, inhibits the energy metabolism, activates AMP-Kinase and impairs the NF-kB pathway in pancreatic cancer cells GP-2250是一种新型抗癌药物,可抑制胰腺癌细胞的能量代谢,激活amp激酶并损害NF-kB通路
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-30 DOI: 10.1111/jcmm.17825
Britta Majchrzak-Stiller, Marie Buchholz, Ilka Peters, Daniel Waschestjuk, Johanna Strotmann, Philipp Höhn, Stephan Hahn, Chris Braumann, Waldemar Uhl, Thomas Müller, Hanns Möhler

GP-2250, a novel anticancer agent, severely limits the energy metabolism, as demonstrated by the inhibition of hexokinase 2 and glyceraldehyde-3-phosphate dehydrogenase and a decrease of ATP. Rescue experiments with supplementary pyruvate or oxaloacetate demonstrated that a TCA cycle deficit largely contributed to cytotoxicity. Activation of the energy-deficit sensor, AMP-dependent protein kinase, was associated with increased phosphorylation of acetyl-CoA carboxylase and Raptor, pointing to a possible deficit in the synthesis of fatty acids and proteins as essential cell components. Binding of p65 to DNA was dose-dependently reduced in nuclear lysates. A transcriptional deficit of NF-κB (nuclear factor kappa-light-chain-enhancer of activated B cells) was substantiated by the downregulation of cyclin D1 and of the anti-apoptotic Bcl2, in line with reduction in tumour cell proliferation and induction of apoptosis, respectively. The upregulation of p53 concomitant with an excess of ROS supported apoptosis. Thus, the anticancer activity of GP-2250 is a result of disruption of energy metabolism and inhibition of tumour promotion by NF-κB.

GP-2250是一种新型抗癌剂,通过抑制己糖激酶2和甘油醛-3-磷酸脱氢酶以及降低ATP,严重限制了能量代谢。补充丙酮酸盐或草酰乙酸盐的救援实验表明,TCA循环缺陷在很大程度上导致了细胞毒性。能量不足传感器AMP依赖性蛋白激酶的激活与乙酰辅酶a羧化酶和猛禽的磷酸化增加有关,这表明脂肪酸和蛋白质作为必需细胞成分的合成可能存在不足。p65与DNA的结合在核裂解物中呈剂量依赖性降低。细胞周期蛋白D1和抗凋亡Bcl2的下调证实了NF-κB(活化B细胞的核因子κ轻链增强子)的转录缺陷,分别与肿瘤细胞增殖的减少和细胞凋亡的诱导一致。p53的上调伴随着过量的ROS支持细胞凋亡。因此,GP-2250的抗癌活性是NF-κB破坏能量代谢和抑制肿瘤促进的结果。
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引用次数: 1
Contribution of PGAP3 co-amplified and co-overexpressed with ERBB2 at 17q12 involved poor prognosis in gastric cancer PGAP3与ERBB2在17q12位点的共扩增和共过表达参与了胃癌的不良预后
IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-29 DOI: 10.1111/jcmm.17828
Dong Wang, Siyu Hao, Hongjie He, Jian Zhang, Ge You, Xin Wu, Rui Zhang, Xiangning Meng, Xiaobo Cui, Jing Bai, Songbin Fu, Jingcui Yu

The locus at 17q12 erb-b2 receptor tyrosine kinase 2 (ERBB2) has been heavily amplificated and overexpressed in gastric cancer (GC), but it remains to be elucidated about the clinical significance of the co-amplification and co-overexpression of PGAP3 gene located around ERBB2 in GC. The profile of PGAP3 and ERBB2 in four GC cell lines and tissue microarrays containing 418 primary GC tissues was assessed to investigate the co-overexpression and clinical significance of the co-amplified genes, and to evaluate the impact of the co-amplified genes on the malignancy of GC. Co-amplification of PGAP3 and ERBB2 accompanied with co-overexpression was observed in a haploid chromosome 17 of NCI-N87 cells with double minutes (DMs). PGAP3 and ERBB2 were overexpressed and positively correlated in 418 GC patients. Co-overexpression of the PGAP3 and ERBB2 was correlated with T stage, TNM stage, tumour size, intestinal histological type and poor survival proportion in 141 GC patients. In vitro, knockdown of the endogenous PGAP3 or ERBB2 decreased cell proliferation and invasion, increased G1 phase accumulation and induced apoptosis in NCI-N87 cells. Furthermore, combined silencing of PGAP3 and ERBB2 showed an additive effect on resisting proliferation of NCI-N87 cells compared with targeting ERBB2 or PGAP3 alone. Taken together, the co-overexpression of PGAP3 and ERBB2 may be crucial due to its significant correlation with clinicopathological factors of GC. Haploid gain of PGAP3 co-amplified with ERBB2 is sufficient to facilitate the malignancy and progression of GC cells in a synergistic way.

17q12 erb-b2受体酪氨酸激酶2 (ERBB2)位点在胃癌(GC)中大量扩增和过表达,但位于ERBB2周围的PGAP3基因在胃癌中共扩增和过表达的临床意义尚不清楚。通过检测4种GC细胞系和418个GC原代组织的组织芯片中PGAP3和ERBB2基因的表达谱,探讨共扩增基因的共过表达及其临床意义,并评价共扩增基因对GC恶性肿瘤的影响。在双分钟(DMs) NCI-N87细胞的17号单倍体染色体上观察到PGAP3和ERBB2的共扩增并共过表达。418例胃癌患者PGAP3和ERBB2过表达并呈正相关。141例胃癌患者中PGAP3和ERBB2共过表达与T分期、TNM分期、肿瘤大小、肠道组织学分型及不良生存率相关。在体外,内源性PGAP3或ERBB2的敲低降低了NCI-N87细胞的增殖和侵袭,增加了G1期积累,诱导了细胞凋亡。此外,与单独靶向ERBB2或PGAP3相比,PGAP3和ERBB2联合沉默对NCI-N87细胞的抗增殖具有加性作用。综上所述,PGAP3和ERBB2的共同过表达可能是至关重要的,因为它与胃癌的临床病理因素有显著的相关性。PGAP3与ERBB2共扩增的单倍体获得足以协同促进GC细胞的恶性和进展。
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引用次数: 1
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