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Nondestructive Identification of Wheat Seed Variety and Geographical Origin Using Near-Infrared Hyperspectral Imagery and Deep Learning 利用近红外高光谱成像和深度学习无损识别小麦种子品种和地理产地
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-07-20 DOI: 10.1002/cem.3585
Apurva Sharma, Tarandeep Singh, Neerja Mittal Garg

Seed purity assurance is an important aspect of maintaining the quality standards of wheat seeds. It relies significantly on quality parameters, like varietal classification and geographical origin identification. Hyperspectral imaging (HSI) has emerged as an advanced nondestructive technique to determine various quality parameters. In recent years, several studies have utilized HSI for varietal classification, although a limited number of varieties were considered. Additionally, no attention has been paid to determining the geographical origin of wheat seeds. To address these gaps, two separate experiments were performed for varietal classification and geographical origin identification. The seeds from 96 varieties grown across 5 different agricultural regions in India were collected. Hyperspectral images of wheat seeds were acquired in the wavelength ranging 900–1700 nm. The spectral reflectance values were obtained from the region of interest (ROI) corresponding to each seed. Subsequently, the deep learning models (convolutional neural networks [CNNs]) were established and compared with two conventional algorithms, including support vector machines (SVMs) and K-nearest neighbors (KNNs). The experimental results indicated that the proposed CNN models outperformed the SVM and KNN models, achieving an overall accuracy of 94.88% and 99.02% for varietal classification and geographical origin identification, respectively. These results demonstrate that HSI combined with deep learning has the potential to accurately classify a large number of wheat varieties. Moreover, HSI can be used to precisely identify the geographical origins of wheat seeds. This study provides an accurate and nondestructive method that can assist in breeding, quality evaluation, and the development of high-quality wheat seeds.

种子纯度保证是保持小麦种子质量标准的一个重要方面。它在很大程度上依赖于质量参数,如品种分类和地理原产地鉴定。高光谱成像(HSI)已成为确定各种质量参数的先进无损技术。近年来,一些研究利用高光谱成像技术进行品种分类,但考虑的品种数量有限。此外,确定小麦种子的地理来源也未受到重视。为了弥补这些不足,我们分别进行了品种分类和地理产地鉴定两项实验。实验收集了印度 5 个不同农业地区种植的 96 个品种的种子。小麦种子的高光谱图像波长范围为 900-1700 纳米。从每个种子对应的感兴趣区域(ROI)获取光谱反射率值。随后,建立了深度学习模型(卷积神经网络 [CNN]),并与两种传统算法(包括支持向量机 (SVM) 和 K-nearest neighbors (KNN))进行了比较。实验结果表明,所提出的 CNN 模型优于 SVM 和 KNN 模型,在品种分类和地理来源识别方面的总体准确率分别达到 94.88% 和 99.02%。这些结果表明,HSI 与深度学习相结合,有可能对大量小麦品种进行准确分类。此外,HSI 还可用于精确识别小麦种子的地理来源。这项研究提供了一种准确、无损的方法,有助于育种、质量评估和优质小麦种子的开发。
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引用次数: 0
Novelty and Similarity: Detection Using Data-Driven Soft Independent Modeling of Class Analogy 新颖性与相似性:利用数据驱动的类比软独立建模进行检测
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-07-18 DOI: 10.1002/cem.3587
O. Y. Rodionova, N. I. Kurysheva, G. A. Sharova, A. L. Pomerantsev

Novelty and similarity are complex concepts that have numerous applications in various fields, including biology and medicine. Novelty detection is a technique used to determine whether a dataset is different from another dataset considered as a standard. Similarity detection is a technique used to determine whether two datasets belong to the same population. Novelty and similarity are closely related concepts; however, they are not complementary. Novelty is a much more popular one, and there are many publications about it. Similarity is, in fact, a new concept that has not yet been explored in depth. Classical statistics offers a large number of tools suitable for detection of similarity, mostly in the univariate case. At the same time, this topic has been insufficiently studied in the field of machine learning. This paper suggests several principles which are important for this research and also present a method for the detection of both novelty and similarity. The method uses a one-class classifier, known as Data-Driven Soft Independent Modeling of Class Analogy (DD-SIMCA). Three examples illustrate our approach. The first one uses simulated data and demonstrates the performance of DD-SIMCA for the detection of novelty. The second example uses a real-world data and studies similarity of two groups of patients who participate in the evaluation of the effectiveness of the treatment of primary angle-closure glaucoma. The third example comes from medical diagnostics. This is a real-world publicly available data used for comparison of various classification algorithms.

新颖性和相似性是复杂的概念,在生物学和医学等多个领域都有大量应用。新颖性检测是一种用于确定一个数据集是否不同于另一个标准数据集的技术。相似性检测是一种用于确定两个数据集是否属于同一群体的技术。新颖性和相似性是密切相关的概念,但二者并不互补。新颖性是一个更受欢迎的概念,关于它的出版物很多。事实上,相似性是一个尚未深入探讨的新概念。经典统计学提供了大量适用于检测相似性的工具,其中大部分是单变量工具。与此同时,机器学习领域对这一主题的研究还不够充分。本文提出了对这一研究非常重要的几条原则,并介绍了一种同时检测新颖性和相似性的方法。该方法使用单类分类器,即数据驱动的类类比软独立建模(DD-SIMCA)。三个例子说明了我们的方法。第一个例子使用模拟数据,展示了 DD-SIMCA 在检测新颖性方面的性能。第二个例子使用真实世界的数据,研究参与原发性闭角型青光眼治疗效果评估的两组患者的相似性。第三个例子来自医疗诊断。这是一个真实世界的公开数据,用于比较各种分类算法。
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引用次数: 0
Permutation Strategies for Inference in ANOVA-Based Models for Nonorthogonal Designs Including Continuous Covariates 基于方差分析的非正交设计模型(包括连续变量)推断的置换策略
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-07-17 DOI: 10.1002/cem.3580
Morten A. Rasmussen, Bekzod Khakimov, Jasper Engel, Jeroen Jansen

Analysis of variance and linear models is undoubtedly one of the most useful statistical contributions to experimental and observational science. With the ability to characterize a system through multivariate responses, these methods have emerged to be general tools regardless of response dimensionality. Contemporary methods for establishing statistical inference, such as ANOVA simultaneous component analysis (ASCA), are based on Monte Carlo sampling; however, a flat uniform resampling scheme may violate the structure of the uncertainty for unbalanced designs as well as for observational data. In this work, we provide permutation strategies for inferential testing for unbalanced designs including interaction models and establish nonuniform randomization based on the concept of propensity score matching. Lastly, we provide a general method for modelling continuous covariates based on kernel smoothers. All methods are characterized on their ability to provide unbiased Type I error results.

方差分析和线性模型无疑是对实验和观测科学最有用的统计贡献之一。由于这些方法能够通过多变量响应来描述一个系统的特征,因此,无论响应维度如何,它们都已成为通用工具。当代建立统计推断的方法,如方差分析(ANOVA)同步成分分析(ASCA),都是基于蒙特卡罗采样;然而,对于不平衡设计和观测数据,平面均匀重采样方案可能会违反不确定性的结构。在这项工作中,我们为不平衡设计(包括交互模型)的推论检验提供了置换策略,并基于倾向评分匹配的概念建立了非均匀随机化。最后,我们提供了一种基于核平滑器的连续协变量建模通用方法。所有方法的特点都是能够提供无偏的 I 类误差结果。
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引用次数: 0
A comprehensive tutorial on data-driven SIMCA: Theory and implementation in web 数据驱动 SIMCA 综合教程:网络理论与实施
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-07-10 DOI: 10.1002/cem.3560
Sergey Kucheryavskiy, Oxana Rodionova, Alexey Pomerantsev
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引用次数: 0
ATR-FTIR Spectroscopy Preprocessing Technique Selection for Identification of Geographical Origins of Gastrodia elata Blume 选择 ATR-FTIR 光谱预处理技术以确定天麻的地理来源
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-07-03 DOI: 10.1002/cem.3579
Hong Liu, Honggao Liu, Jieqing Li, Yuanzhong Wang

Gastrodia elata Blume from different regions varies in growth conditions, soil types, and climate, which directly affects the content and quality of its medicinal components. Accurately identifying the origin can effectively ensure the medicinal value of G. elata Bl., prevent the circulation of counterfeit products, and thus protect the interests and health of consumers. Attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy is a rapid and effective method for verifying the authenticity of traditional Chinese medicines. However, the presence of scattering effects in the spectra poses challenges in establishing reliable discrimination models. Therefore, employing appropriate scattering correction techniques is crucial for improving the quality of spectral data and the accuracy of discrimination models. This study uses two ensemble preprocessing approaches; the first type is series fusion of scatter correction technologies (SCSF), and another method is sequential preprocessing through orthogonalization (SPORT). Four discriminant models were established using a single scattering correction technique and two ensemble preprocessing approaches. The results show that the data-driven version of the soft independent modeling of class analogy (DD-SIMCA) model built based on multiplicative scatter correction (MSC) preprocessing has a sensitivity of 0.98 and a specificity of 0.91, able to effectively distinguish whether a sample of G. elata Bl. originates from Zhaotong. In addition, three discriminant models including support vector machine (SVM), partial least squares discriminant analysis (PLS-DA), and three gradient boosting machine (GBM) algorithms built using the ensemble preprocessing approach have good classification and generalization capabilities. Among them, the SCSF-PLS-DA model has the best performance with 99.68% and 98.08% accuracy for the training and test sets, respectively, and F1 of 0.97; the SPORT-SVM model achieved the second-best classification ability. The results show that the ensemble preprocessing approach used can improve the success rate of G. elata Bl. geographical origin classification.

不同地区的天麻因生长条件、土壤类型、气候等不同,直接影响其药用成分的含量和质量。准确鉴定产地能有效确保白花蛇舌草的药用价值,防止假冒伪劣产品的流通,从而保护消费者的利益和健康。衰减全反射傅立叶变换红外光谱法(ATR-FTIR)是验证中药真伪的一种快速有效的方法。然而,光谱中散射效应的存在给建立可靠的鉴别模型带来了挑战。因此,采用适当的散射校正技术对于提高光谱数据的质量和鉴别模型的准确性至关重要。本研究采用了两种集合预处理方法:第一种是散射校正技术系列融合(SCSF),另一种方法是通过正交化进行序列预处理(SPORT)。利用单一散射校正技术和两种集合预处理方法建立了四个判别模型。结果表明,基于乘法散射校正(MSC)预处理方法建立的数据驱动版类类比软独立建模(DD-SIMCA)模型的灵敏度为 0.98,特异度为 0.91,能够有效区分昭通白花蛇舌草样本是否产自昭通。此外,利用集合预处理方法建立的支持向量机(SVM)、偏最小二乘判别分析(PLS-DA)等三种判别模型和三种梯度提升机(GBM)算法也具有良好的分类和泛化能力。其中,SCSF-PLS-DA 模型性能最好,训练集和测试集的准确率分别为 99.68% 和 98.08%,F1 为 0.97;SPORT-SVM 模型的分类能力次之。结果表明,所使用的集合预处理方法可以提高 G. elata Bl. 地理起源分类的成功率。
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引用次数: 0
Firefly Interval Selection Combined With Extreme Learning Machine for Spectral Quantification of Complex Samples 萤火虫区间选择与极限学习机相结合,用于复杂样本的光谱量化
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-07-01 DOI: 10.1002/cem.3578
Shuyu Wang, Xudong Zhang, Prisca Mpango, Hao Sun, Xihui Bian

Firefly algorithm (FA) combined with extreme learning machine (ELM) is developed for spectral interval selection and quantitative analysis of complex samples. The method firstly segments the spectra into a certain number of intervals. Vectors with 1 and 0, which represent the interval selected or not, are used as the inputs of the FA. The RMSEP value predicted by ELM model is used as the fitness function of the FA. The activation function and number of hidden layer nodes of ELM, number of spectral intervals, population number, environmental absorbance, and constant of FA are optimized. The predictive performance of FA-ELM is compared with full-spectrum PLS, ELM, genetic algorithm-ELM (GA-ELM), and particle swarm optimization-ELM (PSO-ELM) by one ultraviolet (UV) spectrum dataset of gasoil and three near-infrared (NIR) spectral datasets of corn, wheat, and tablet samples. The results show that FA-ELM has a better performance compared with its competitors in predicting monoaromatics, water, wheat kernel texture, and active pharmaceutical ingredients (APIs) in gasoil, corn, wheat, and tablet samples.

萤火虫算法(FA)与极端学习机(ELM)相结合,用于复杂样本的光谱区间选择和定量分析。该方法首先将光谱划分为一定数量的区间。带 1 和 0 的向量代表区间选择与否,被用作 FA 的输入。ELM 模型预测的 RMSEP 值用作 FA 的适应度函数。对 ELM 的激活函数和隐层节点数、光谱区间数、种群数、环境吸光度以及 FA 的常数进行了优化。通过一个汽油紫外线(UV)光谱数据集和三个玉米、小麦和片剂样品的近红外(NIR)光谱数据集,比较了 FA-ELM 与全光谱 PLS、ELM、遗传算法-ELM(GA-ELM)和粒子群优化-ELM(PSO-ELM)的预测性能。结果表明,与竞争对手相比,FA-ELM 在预测汽油、玉米、小麦和片剂样品中的单芳烃、水分、麦仁纹理和活性药物成分 (API) 方面具有更好的性能。
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引用次数: 0
Minimum Spanning Tree-Based Clustering for Chemical Evaluation of Commercial Nail Polish Samples Using Spectroanalytical Data 利用光谱分析数据对商用指甲油样品进行化学评估的基于最小生成树的聚类方法
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-06-23 DOI: 10.1002/cem.3575
Heloisa Froehlick Castello, Felipe Lopes Rodrigues Silva, Dennis Silva Ferreira, Alexandre Luis Magalhães Levada, Edenir Rodrigues Pereira-Filho, Fabiola Manhas Verbi Pereira

This study discusses potential toxic elements detection in conventional nail polish, including Cr and Pb. The noteworthy results highlight well-established potential risks of elevated Cr and Pb concentrations. These elements are not allowed in the European Union. Implementing the minimum spanning tree (MST) approach and the isolation forest algorithm effectively clustered samples. Forty-five samples were analyzed, and four clusters were identified. Two presented six samples with high concentrations of Fe (Cluster 1 with four samples) and Cr and Pb (Cluster 2 with two samples). The other 39 samples presented low concentrations of the determined elements (Co, Cr, Cu, Fe, Ni, and Pb). Cadmium, Zn, and Mn were not detected in any of the analyzed samples. Furthermore, integrating energy-dispersive x-ray fluorescence (ED-XRF) and laser-induced breakdown spectroscopy (LIBS) enabled fast direct analysis of nail polish samples, streamlining a swift and reliable data acquisition process. This research underscores the importance of ongoing vigilance and monitoring of potential health hazards associated with nail polish formulations, especially in regions with regulatory restrictions on certain elements.

本研究讨论了在传统指甲油中检测到的潜在有毒元素,包括铬和铅。值得注意的结果凸显了已被证实的铬和铅浓度升高的潜在风险。欧盟不允许使用这些元素。采用最小生成树(MST)方法和隔离林算法有效地对样品进行了聚类。对 45 个样本进行了分析,确定了四个聚类。其中两个群组中的六个样本含有高浓度的铁(群组 1,四个样本)、铬和铅(群组 2,两个样本)。其他 39 个样本中的元素(钴、铬、铜、铁、镍和铅)浓度较低。镉、锌和锰在所有分析样品中均未检测到。此外,将能量色散 X 射线荧光 (ED-XRF) 与激光诱导击穿光谱 (LIBS) 相结合,可以快速直接分析指甲油样品,简化了快速可靠的数据采集过程。这项研究强调了持续警惕和监测与指甲油配方相关的潜在健康危害的重要性,尤其是在对某些元素有监管限制的地区。
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引用次数: 0
Detection of moisture content of edamame based on the fusion of reflectance and transmittance spectra of hyperspectral imaging 基于高光谱成像的反射和透射光谱融合检测毛豆的水分含量
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-06-12 DOI: 10.1002/cem.3574
Bin Li, Cheng-tao Su, Hai Yin, Ji-ping Zou, Yan-de Liu

Edamame is a nutritious and economically valuable soybean. The moisture content is an important indicator of the quality of the edamame. The traditional methods in the detection of moisture content of edamame have the disadvantage of large detection errors. In this research, the fusion of transmittance and reflectance spectra of hyperspectral imaging combined with chemometrics was proposed to predict the moisture content of edamame. Also, the effect of different preprocessing of the spectra on the predictive performance was analyzed. Single spectra, primary fusion spectra, and intermediate fusion spectra were established as the prediction models for partial least squares regression (PLSR) and partial least squares support vector regression (LSSVR), respectively. The results of the prediction models showed that the spectral transform absorption (STA) combined with PLSR has the best prediction performance for a single spectrum with predictive correlation (RP) of 0.7749 and ratio of prediction to deviation (RPD) of 1.7. Standard normal variate (SNV) combined with LSSVR has the best prediction performance for primary fusion spectra with RP of 0.8821 and RPD of 1.9. SNV combined with LSSVR has the best prediction performance for intermediate fusion spectra with RP of 0.9149 and RPD of 2.4. The Rp and RPD of prediction models of the moisture content of edamame based on fusion spectra were significantly improved compared with single spectra. Compared with primary fusion, intermediate fusion is a more suitable fusion strategy. This research provides experimental basis for the prediction of moisture content of edamame using spectral fusion combined with chemometrics.

毛豆是一种营养丰富、经济价值高的大豆。水分含量是衡量毛豆质量的重要指标。传统的毛豆水分含量检测方法存在检测误差大的缺点。本研究提出将高光谱成像的透射光谱和反射光谱与化学计量学相结合来预测毛豆的水分含量。此外,还分析了对光谱进行不同预处理对预测性能的影响。分别建立了单光谱、初级融合光谱和中级融合光谱作为偏最小二乘回归(PLSR)和偏最小二乘支持向量回归(LSSVR)的预测模型。预测模型的结果表明,光谱变换吸收(STA)结合 PLSR 对单一光谱的预测性能最好,预测相关性(RP)为 0.7749,预测与偏差比(RPD)为 1.7。标准正态变异(SNV)与 LSSVR 的组合对主融合光谱的预测性能最佳,RP 为 0.8821,RPD 为 1.9。SNV 与 LSSVR 相结合对中间融合光谱的预测性能最好,RP 为 0.9149,RPD 为 2.4。与单一光谱相比,基于融合光谱的毛豆水分含量预测模型的 Rp 和 RPD 都有显著提高。与一次融合相比,中间融合是一种更合适的融合策略。这项研究为利用光谱融合结合化学计量学预测毛豆的水分含量提供了实验依据。
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引用次数: 0
Characterisation of Position-Dependant Ripening Dynamics of Nectarines Using Near-Infrared Spectroscopy and ASCA 利用近红外光谱和 ASCA 分析油桃随位置变化的成熟动力学特征
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-06-09 DOI: 10.1002/cem.3576
Jokin Ezenarro, Daniel Schorn-García, Anna Palou, Montserrat Mestres, Laura Aceña, Maribel Abadias, Ingrid Aguiló-Aguayo, Olga Busto, Ricard Boqué

Nectarines, a popular pit fruit closely related to peaches, are renowned for their nutritional value and associated health benefits. However, challenges arise in maintaining optimal organoleptic properties during harvest and handling, eventually leading to production waste and heterogeneous quality in the fruit that arrives to the consumer. This study investigates the impact of nectarine position on trees during the whole ripening process using non-destructive near-infrared (NIR) spectroscopy. Nectarines exposed to more sunlight mature faster and this influences sugar content and acidity, emphasising the significance of considering height, prominence and orientation in ripening dynamics of the fruit. Different data unfolding strategies were compared, using ANOVA-Simultaneous Component Analysis (ASCA) to reveal the significance of in-tree position factors at different ripening stages, and observing high significance at harvest. This underscores the necessity for growers and handlers to consider these factors for reducing waste. NIR spectroscopy, with adequate data analysis, is a valuable tool for the holistic analysis of fruit ripening, providing crucial insights for maintaining optimal fruit organoleptic properties from harvest to consumer.

油桃是一种广受欢迎的核果,与桃子关系密切,以其营养价值和相关的健康益处而闻名。然而,在采收和处理过程中,要保持最佳的感官特性却面临着挑战,最终导致生产浪费和到达消费者手中的水果质量参差不齐。本研究利用非破坏性近红外(NIR)光谱技术,调查了油桃在整个成熟过程中的位置对果树的影响。暴露在更多阳光下的油桃成熟更快,这影响了含糖量和酸度,强调了在果实成熟动态中考虑高度、突出度和方向的重要性。利用方差分析--同时成分分析(ASCA)对不同的数据展开策略进行了比较,以揭示树上位置因素在不同成熟阶段的重要性,并观察到收获时的高度重要性。这说明种植者和处理者有必要考虑这些因素,以减少浪费。通过适当的数据分析,近红外光谱是全面分析水果成熟度的重要工具,可为从采收到消费者整个过程中保持最佳水果感官特性提供重要见解。
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引用次数: 0
Generating realistic infrared spectra using artificial neural networks 利用人工神经网络生成逼真的红外光谱
IF 2.3 4区 化学 Q1 SOCIAL WORK Pub Date : 2024-05-29 DOI: 10.1002/cem.3573
László Győry, Szilveszter Gergely, Pál Péter Hanzelik

Artificial spectra were generated to match the different acid solubility properties of the rocks. The purpose of generating artificial spectra was to increase the number of samples available for future data processing with a convolutional neural network. The samples were collected from different geological matrices during targeted rock tests to support industrial applications. The inherent characteristics of the samples are their uneven distribution in the parameter space of the features and their limited availability for data-intensive studies. Both data set characteristics constrain the prediction performance of the machine learning methods to estimate the unknown solubility of samples in the chosen acids. If the sample multiplication techniques are performed without considering the relationship between solubility of samples and their infrared spectra, the synthetic samples adversely impact the efficacy of the prediction method. By utilizing a dimensionality reduction technique (principal component analysis) and a neural network, we established a relationship between the solubility of the samples and their infrared spectra. Infrared spectra of the samples used for learning the model could be efficiently reproduced and infrared spectra of created samples could be generated. The reliability of the applied method has been shown by the comparison of the original and artificial spectra through a mean Pearson correlation coefficient and by comparing the closest neighbors to each other. This method can be used to create new samples and their infrared spectra, where different constraints must be met and the samples must be connected to the infrared spectrum.

生成的人工光谱与岩石的不同酸溶解特性相匹配。生成人工光谱的目的是增加可用于未来卷积神经网络数据处理的样本数量。这些样本是在为支持工业应用而进行的有针对性的岩石测试中从不同的地质基质中采集的。样本的固有特征是其在特征参数空间中的分布不均匀,以及其在数据密集型研究中的可用性有限。这两个数据集特征都限制了机器学习方法的预测性能,无法估算样品在所选酸中的未知溶解度。如果在不考虑样品溶解度与其红外光谱之间关系的情况下执行样品倍增技术,合成样品就会对预测方法的效果产生不利影响。通过使用降维技术(主成分分析)和神经网络,我们建立了样品溶解度与其红外光谱之间的关系。用于学习模型的样品的红外光谱可以有效地再现,创建的样品的红外光谱也可以生成。通过平均皮尔逊相关系数对原始光谱和人造光谱进行比较,并比较彼此的近邻光谱,证明了所应用方法的可靠性。该方法可用于创建新样本及其红外光谱,其中必须满足不同的限制条件,并且样本必须与红外光谱相连。
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引用次数: 0
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Journal of Chemometrics
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