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Computer Vision Detects an Association Between Gross Gill Score and Ventilation Rates in Farmed Atlantic Salmon (Salmo salar) 计算机视觉检测养殖大西洋鲑鱼(Salmo salar)的总鳃评分和通气率之间的关系。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-25 DOI: 10.1111/jfd.70055
Quynh Le Khanh Vo, Kylie A. Pitt, Colin Johnston, Blair Kennedy, Lukas Folkman

Poor gill health compromises the health and welfare of farmed Atlantic salmon (Salmo salar) by causing respiratory distress and increased ventilation frequency. Poor gill health is caused by numerous factors, including amoebic gill disease (AGD), jellyfish stings, and toxic algae, and is monitored by fish farmers by manual ‘gill scoring’. Gill scoring involves visual inspection of gill surfaces for visible lesions, such as white mucoid patches. In commercial salmon farming, these patches are commonly associated with AGD, a major cause of poor gill health. Manual monitoring of gills is labour-intensive, costly, and stressful for fish. This study tested a non-invasive computer vision approach to detect the association between the gross gill score and fish ventilation rates in commercial farms. We hypothesised that increased ventilation rates of farmed Atlantic salmon were associated with a higher gross gill score. The computer vision model first detected fish heads and classified their mouth states (open or closed) using a convolutional neural network, followed by a tracking-by-detection method to estimate ventilation rates by calculating the frequency with which fish opened and closed their mouths. Ventilation rates were estimated from 240 videos recorded at Tasmanian salmon farms and analysed alongside gross gill score, water temperature, dissolved oxygen, and fish weight. Multiple linear regression analysis revealed a positive association between ventilation rates and gross gill score, although the observed change in ventilation rates was relatively small. As laboratory diagnostic methods did not confirm AGD in this study, the gross gill scores should be interpreted primarily as indicators of gill health, acknowledging that they may also reflect signs consistent with AGD. While the tested computer vision method cannot serve as a diagnostic tool, it may assist the industry in identifying health and welfare issues that require further examination. This approach provides a non-invasive way to oversee health and welfare, enhances management practices, and guides manual health assessments.

鳃健康状况不佳会导致呼吸窘迫和换气频率增加,从而损害养殖大西洋鲑鱼(Salmo salar)的健康和福利。鳃健康状况不佳是由多种因素造成的,包括阿米巴鳃病(AGD)、水母蜇伤和有毒藻类,养鱼户通过人工“鳃评分”来监测。鳃评分包括目视检查鳃表面的可见病变,如白色粘液斑块。在商业鲑鱼养殖中,这些斑块通常与AGD有关,这是导致鳃健康状况不佳的主要原因。对鱼类来说,人工监测鳃是一项劳动密集型的工作,成本高昂,而且压力很大。本研究测试了一种非侵入性计算机视觉方法,以检测商业养殖场中总鳃评分和鱼类通气率之间的关系。我们假设养殖大西洋鲑鱼通气率的增加与较高的总鳃评分有关。计算机视觉模型首先检测鱼头,并使用卷积神经网络对它们的嘴巴状态(张开或闭上)进行分类,然后使用检测跟踪方法通过计算鱼张开和闭上嘴巴的频率来估计通风率。通过在塔斯马尼亚鲑鱼养殖场录制的240个视频估计了通风率,并与鳃总评分、水温、溶解氧和鱼的重量一起进行了分析。多元线性回归分析显示通气率与总鳃评分呈正相关,尽管观察到通气率的变化相对较小。由于本研究中实验室诊断方法未证实AGD,因此鳃总评分应主要被解释为鳃健康状况的指标,承认它们也可能反映与AGD一致的体征。虽然经过测试的计算机视觉方法不能作为诊断工具,但它可以帮助工业界确定需要进一步检查的健康和福利问题。这种方法提供了一种非侵入性的方式来监督健康和福利,增强管理实践,并指导手动健康评估。
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引用次数: 0
Trouble in the Tank: A Case Report of Fatal Scuticociliate Encephalitis in a Whitetip Reef Shark (Triaenodon obesus) 水族箱中的麻烦:白鳍鲨(Triaenodon obesus)致死性囊尾蚴脑炎一例报告。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-22 DOI: 10.1111/jfd.70046
Hella Schwegler, Jeff Schreiner, Maria Prüllage, Karoline Lipnik, Astrid S. Holzer, Eva Lewisch

This case report presents a recent case of scuticociliatosis in a whitetip reef shark (Triaenodon obesus), housed at a zoo (Haus des Meeres Aqua Terra Zoo, Vienna, Austria). Clinical signs such as uncoordinated swimming and body tilt were observed prior to death. Postmortem examination and magnetic resonance imaging (MRI) revealed significant brain lesions consistent with granulomatous or necrotising encephalitis. Histopathology and molecular diagnostics confirmed the presence of the scuticociliate Miamiensis avidus and/or Philasterides dicentrarchi in the brain, with extensive tissue invasion. This case underscores the pathogenicity of scuticociliates in elasmobranchs, highlighting the need for effective management practices in aquaria to prevent or mitigate such infections. In this study, we present the first documented infection with scuticociliates in the whitetip reef shark.

本病例报告介绍了最近在动物园(Haus des Meeres Aqua Terra动物园,奥地利维也纳)饲养的白鳍鲨(Triaenodon obesus)中发生的一种棘毛癣病。死亡前观察到不协调游泳和身体倾斜等临床症状。死后检查和磁共振成像(MRI)显示明显的脑部病变与肉芽肿性或坏死性脑炎一致。组织病理学和分子诊断学证实,脑内存在大面积组织浸润的迈阿密褐毛虫和/或费城褐毛虫。这一病例强调了板鳃动物的巩膜纤毛虫的致病性,强调了在水族馆采取有效管理措施以预防或减轻此类感染的必要性。在这项研究中,我们提出了第一个记录感染白鳍鲨的肩胛骨。
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引用次数: 0
Planktonic and Sessile Piscirickettsia salmonis Disrupts Morpho-Functional Parameters in Rainbow Trout Intestinal Epithelial RTGutGC Cells 浮游和无柄piscirickettssia鲑科菌破坏虹鳟鱼肠上皮RTGutGC细胞的形态功能参数。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-21 DOI: 10.1111/jfd.70049
Diego Cárcamo, Raibel Suárez, Natacha Santibáñez, Carla Escalona, Tatiana Pérez, Matías Vega, Ricardo Enríquez, Luis Vargas-Chacoff, Cristian Oliver, Alex Romero

Piscirickettsiosis is a systemic infectious disease caused by Piscirickettsia salmonis, a Gram-negative, biofilm-forming bacterium capable of infecting the main salmonid species farmed in Chile. The initial stages of P. salmonis infection occur in the mucous membranes of the skin, gills, and intestine before spreading systemically. At the intestinal level, several pathogenic bacteria can disrupt the functionality of the epithelial barrier as an infection mechanism, associated with alterations in the expression of immune genes and intercellular junctions. The aim of this study was to determine in vitro the effect of P. salmonis infection in both sessile and planktonic conditions on the morpho functionality of the intestinal epithelial cell line RTgutGC of rainbow trout. Thus, the effect of P. salmonis infection on immune gene expression and intercellular junctions was evaluated using RT-qPCR, intercellular junction protein levels via Western blot, transepithelial resistance (TEER) modulation, cytotoxicity, and ZO-1 localization through immunofluorescence. The results indicate that P. salmonis LF-89 and EM-90 in both sessile and planktonic conditions significantly modulate the expression of il-8, il-1β, tgf-β, and zo-1, claudin-3, and E-cadherin. Interestingly, alterations in the levels of Claudin-3 and E-cadherin, associated with the altered immunolocalization of ZO-1 after the infection with P. salmonis, were detected. Importantly, an increase in bacterial translocation associated with a decrease in the TEER value, from the first 12 h post-infection, was measured. These findings suggest that P. salmonis modulates the expression of genes and proteins related to intercellular junctions, modifying the epithelial morpho-functionality, which could allow bacterial translocation in the early stages of infection.

鱼立克氏体病是由鲑属鱼立克氏体引起的一种全体性传染病。鲑立克氏体是一种革兰氏阴性的生物膜形成细菌,能够感染智利养殖的主要鲑属鱼。沙门氏菌感染的最初阶段发生在皮肤、鳃和肠道的粘膜,然后全身扩散。在肠道水平,一些致病菌可以破坏上皮屏障的功能,作为一种感染机制,与免疫基因表达和细胞间连接的改变有关。本研究的目的是在体外确定在固定式和浮游条件下沙门氏菌感染对虹鳟鱼肠上皮细胞系RTgutGC形态功能的影响。因此,采用RT-qPCR、Western blot检测细胞间连接蛋白水平、经上皮耐药(TEER)调节、细胞毒性和免疫荧光检测ZO-1定位等方法评估沙门氏菌感染对免疫基因表达和细胞间连接的影响。结果表明,在无根和浮游条件下,沙门氏菌LF-89和EM-90均能显著调节il-8、il-1β、tgf-β和zo-1、cladin -3和E-cadherin的表达。有趣的是,检测到与沙门氏菌感染后ZO-1免疫定位改变相关的cladin -3和E-cadherin水平的改变。重要的是,从感染后的第一个12小时开始,测量了细菌易位的增加与TEER值的降低相关。这些发现表明,沙门氏菌调节与细胞间连接相关的基因和蛋白质的表达,改变上皮形态功能,这可能允许细菌在感染的早期阶段易位。
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引用次数: 0
First Case of Nocardia seriolae Infection in China Cultured Channel Catfish (Ictalurus punctatus) 中国养殖槽形鲶鱼感染诺卡菌首例。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-19 DOI: 10.1111/jfd.70044
Mingqi Ai, Keyu Zhou, Qibin Jiang, Kun Peng, Yilin Wang, Yiteng Luo, Ping Ouyang, Defang Chen, Xiaoli Huang, Yi Geng

Nocardia seriolae is a causative agent for fish skin ulcers and sarcoidosis, resulting in significant losses in both brackish and freshwater fish farming industries. From October to November 2023, channel catfishes (Ictalurus punctatus) cultured in Xiaowan reservoir at Dali city, Yunnan province in China, showed gross pathological changes with skin ulcers, white nodules in the liver and heart, histopathological tests revealed the typical granulomas and chronic hepatitis changes in the liver, and the clumps of filamentous bacteria in the heart and spleen. A Gram-positive acid-fast bacterium (CCF_NS01) was isolated from viscera (liver, spleen and kidney); biochemical tests and 16sRNA-GyrB gene concatenated sequences analysis of this isolated microorganism identified it as N. seriolae. Drug sensitivity testing indicated susceptibility to commonly used antibiotics such as co-trimoxazole, doxycycline, enrofloxacin, florfenicol, amikacin and rifampicin. In isolated CCF_NS01, multiple pathogenic factors corresponding to encoding genes were detected, including espG, mftF, pcaA, fadD32, pks13, narJ, feoB, sodA, katG and mceF. 100% mortality with 1 × 108, 1 × 107 and 1 × 106 cfu/mL in a 35-d challenge test period was observed, and the intraperitoneal injection median lethal dose (LD50) was 1.89 × 104 cfu/mL. This is the first isolation report of N. seriolae infection from cultured channel catfish, aiming to warn against the continuous host-range expansion of this pathogen, which is threatening the inland aquaculture industry.

严重诺卡菌是鱼类皮肤溃疡和结节病的病原体,在咸淡鱼和淡水鱼养殖业造成重大损失。2023年10月至11月,在云南省大理市小湾水库养殖的槽鲶(Ictalurus punctatus)大体病理改变为皮肤溃疡,肝脏和心脏出现白色结节,组织病理学检查显示肝脏出现典型肉芽肿和慢性肝炎改变,心脏和脾脏出现丝状细菌团块。从脏器(肝、脾、肾)中分离到革兰氏阳性抗酸菌CCF_NS01;生化试验和16sRNA-GyrB基因序列分析鉴定该分离微生物为梭状芽孢杆菌。药敏试验显示对常用抗生素如复方新诺明、强力霉素、恩诺沙星、氟苯尼考、阿米卡星和利福平敏感。在CCF_NS01分离株中,检测到与编码基因对应的多种致病因子,包括espG、mftF、pcaA、fadD32、pks13、narJ、feoB、sodA、katG和mceF。1 × 108、1 × 107和1 × 106 cfu/mL攻毒期35 d死亡率为100%,腹腔注射致死中位剂量(LD50)为1.89 × 104 cfu/mL。这是首次从养殖渠道鲶鱼中分离出梭状奈瑟菌感染的报道,旨在警告该病原体的宿主范围不断扩大,威胁着内陆水产养殖业。
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引用次数: 0
Effectiveness of Freshwater on Caligus rogercresseyi Juveniles 淡水对大菱鲆幼鱼的效果。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-18 DOI: 10.1111/jfd.70045
Jorge Mancilla-Schulz, Daniel Vivar, Jaime Santana, Ananías Peralta, Fernando Schulze, Marlen Espinoza, Margarita P. González-Gómez

Freshwater is a non-pharmaceutical tool used for the control of Caligus infestation with a proven effect on adult and larval stages. However, the minimum exposure time to achieve a greater effect (100%) on juvenile stages has not been determined through in vivo tests. Therefore, it is important to determine these minimum times on C. rogercresseyi chalimus, considering that freshwater baths should be performed with a wellboat to achieve the greatest effect. A study was thus formulated that allowed us to evaluate the effect of applying freshwater treatment on C. rogercresseyi juveniles at different exposure times through in vivo tests on Atlantic salmon (Salmo salar). The results indicated that a treatment of more than 2.5 h with freshwater induces a greater effect (100%) and mortality (~95%) on juvenile stages, at least at chalimus III-IV. Juvenile stages are a critical point in population dynamics and control of the parasite, since those that survive treatment increase the possibility of augments in parasitic loads in the short term, and cause loss of sensitivity. Based on these results, freshwater treatment exposure time should exceed 2.5 h in order to ensure effectiveness on parasite stages and, therefore, to avoid development of resistance to freshwater and prolong the useful life of this non-pharmaceutical tool.

淡水是一种非药物工具,用于控制卡利斯侵染,已证实对成虫和幼虫阶段都有效果。然而,在幼年期达到更大效果(100%)的最短暴露时间尚未通过体内试验确定。因此,考虑到淡水浴应该在井船上进行,以达到最大的效果,确定C. rogercresseyi chalimus的这些最小时间是很重要的。因此,制定了一项研究,使我们能够通过对大西洋鲑鱼(Salmo salar)的体内试验,评估在不同暴露时间对C. rogercresseyi幼鱼进行淡水处理的效果。结果表明,淡水处理2.5 h以上,对幼鱼期的效果(100%)和死亡率(~95%)更高,至少在III-IV期。幼虫阶段是种群动态和寄生虫控制的关键点,因为那些在处理中存活下来的幼虫在短期内增加寄生负荷的可能性,并导致敏感性的丧失。根据这些结果,淡水处理暴露时间应超过2.5小时,以确保对寄生虫阶段有效,从而避免对淡水产生耐药性,并延长这种非药物工具的使用寿命。
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引用次数: 0
Epidemiological Insights Into Infectious Pancreatic Necrosis Virus: Detection, Distribution and Persistence in Chilean Salmon Farms 传染性胰腺坏死病毒的流行病学见解:智利鲑鱼养殖场的检测、分布和持久性。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-18 DOI: 10.1111/jfd.70047
Yoanna Eissler, David Tapia, Cristian B. Canales-Aguirre, José Manuel Yáñez

This study presents a comprehensive molecular and epidemiological characterisation of infectious pancreatic necrosis virus (IPNV) in Chilean salmon aquaculture. Between 2015 and 2016, 26 sampling events were conducted in freshwater and seawater farms spanning a broad latitudinal gradient (30.3° S to 52.6° S). Three diagnostic methods were used: Quantitative real-time Polymerase Chain Reaction (PCR) (qRT-PCR) (targeting VP1 and VP2 protein coding genes), nested PCR and virus isolation in CHSE-214 cells. In addition, a 523-bp VP2 gene fragment was sequenced directly from samples. These approaches were employed to assess detection sensitivity and to explore IPNV genogroup distribution and persistence. Nested PCR and viral isolation detected IPNV in 50 of 53 samples, outperforming qRT-PCR, which detected only 39. Phylogenetic analysis of the 523-bp VP2 gene fragment classified the isolates into two genogroups—5 (Salmo salar) and 1 (Oncorhynchus spp.), confirming host-specific associations. Identical or near-identical sequences were identified in geographically distant farms and temporally spaced samples, suggesting persistent isolates and potential long-distance spread, likely via egg transfers or fish movement. The most severe mortality event (> 125,000 fish) occurred during a genogroup 1 outbreak (Isla del Rey, GMTS, O. kisutch), followed by genogroup 5 outbreaks documented in Molco Alto (PMLC, S. salar) and Chayahue (S. salar). Although less frequently detected, genogroup 1 was associated with higher virulence, particularly in coho salmon. These findings highlight the need of integrated diagnostic strategies, genogroup-specific monitoring and strengthened biosecurity to mitigate the impact of IPNV in Chilean salmon farming.

本研究提出了智利鲑鱼养殖中感染性胰腺坏死病毒(IPNV)的综合分子和流行病学特征。2015年至2016年期间,在宽纬度梯度(30.3°S至52.6°S)的淡水和海水养殖场进行了26次采样。采用实时荧光定量聚合酶链反应(qRT-PCR)(针对VP1和VP2蛋白编码基因)、巢式PCR和病毒分离三种诊断方法对CHSE-214细胞进行检测。此外,直接从样本中测序了一个523 bp的VP2基因片段。这些方法用于评估检测灵敏度和探索IPNV基因群分布和持久性。巢式PCR和病毒分离在53份样本中检测到50份IPNV,优于qRT-PCR,后者仅检测到39份。523 bp VP2基因片段的系统发育分析将分离物分为两个基因群-5 (Salmo salar)和1 (Oncorhynchus spp.),证实了宿主特异性关联。在地理位置遥远的农场和时间间隔的样本中发现了相同或接近相同的序列,表明持续分离和潜在的长距离传播,可能通过卵子转移或鱼类运动。最严重的死亡事件(125,000条鱼)发生在基因1组暴发期间(Isla del Rey, GMTS, O. kisutch),其次是Molco Alto (PMLC, S. salar)和Chayahue (S. salar)记录的基因5组暴发。虽然不常被发现,但基因组1与较高的毒力有关,特别是在银鲑中。这些发现突出表明,需要采取综合诊断策略、针对基因组的监测和加强生物安全,以减轻IPNV对智利鲑鱼养殖的影响。
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引用次数: 0
Unveiling the Past: A Retrospective Detection of Lactococcus petauri in Farmed European Seabass (Dicentrarchus labrax) in the Tyrrhenian Sea 揭开过去:第勒尼安海养殖欧洲鲈(Dicentrarchus labrax)中petauri乳球菌的回顾性检测。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-14 DOI: 10.1111/jfd.70048
Giuseppe Esposito, Silvia Colussi, Giorgia Bignami, Marialetizia Fioravanti, Paolo Pastorino, Fabio Bondavalli, Marino Prearo, Andrea Gustinelli

Lactococcus petauri is an emerging bacterial pathogen associated with disease outbreaks in freshwater and marine fish species worldwide. While it has been increasingly reported in countries bordering the Mediterranean Sea, no official records of L. petauri have yet been made in Italy for saltwater species. This study reports, for the first time, the presence of L. petauri in European seabass (Dicentrarchus labrax) farmed in land-based tanks along the south-western coast of Italy, based on a retrospective analysis of previously isolated strains. Although only a single isolate was positive, the finding is of notable significance as it originated from a sample collected in 2012. This temporal aspect highlights the likelihood that L. petauri has been circulating in Italian aquaculture systems for at least a decade. The isolate also exhibited a broad antimicrobial resistance profile, including resistance to amoxicillin, fluoroquinolones and trimethoprim/sulfamethoxazole. The historical misidentification of L. petauri is linked to its clinical similarity with Lactococcus garvieae. This highlights the value of re-analysing archived strains with modern tools and underlines the need for accurate diagnostics in aquaculture. The detection in D. labrax extends the known host range and suggests a longer, undetected presence in the Mediterranean.

petauri乳球菌是一种新兴的细菌病原体,与世界范围内淡水和海洋鱼类疾病暴发有关。虽然在地中海沿岸的国家有越来越多的报道,但在意大利还没有关于咸水物种的正式记录。本研究基于对先前分离菌株的回顾性分析,首次报道了在意大利西南海岸陆基池中养殖的欧洲鲈鱼(Dicentrarchus labrax)中存在L. petauri。虽然只有一株分离物呈阳性,但这一发现具有重要意义,因为它来自2012年收集的样本。这一时间性方面突出表明,小波氏乳杆菌在意大利水产养殖系统中流传了至少十年的可能性。该分离物还显示出广泛的抗微生物药物耐药性,包括对阿莫西林、氟喹诺酮类药物和甲氧苄啶/磺胺甲恶唑的耐药性。历史上对牛乳杆菌的误认与它与garvieae乳球菌的临床相似性有关。这突出了用现代工具重新分析存档菌株的价值,并强调了在水产养殖中进行准确诊断的必要性。在拉布拉克斯疟原虫中的发现扩大了已知宿主的范围,并表明在地中海存在的时间更长,但未被发现。
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引用次数: 0
Effects of Increased Water Salinity and Temperature on the Development of Rainbow Trout Fry Syndrome (RTFS) Caused by Flavobacterium psychrophilum 水温和盐度升高对嗜冷黄杆菌致虹鳟鱼鱼苗综合征(RTFS)发生的影响
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-14 DOI: 10.1111/jfd.70037
Valentina L. Donati, Niels Lorenzen, Lone Madsen

Flavobacterium psychrophilum, the etiological agent of Rainbow Trout Fry Syndrome (RTFS) and Bacterial Coldwater Disease (BCWD), causes varying degrees of disease and mortality in salmonid aquaculture worldwide. Because its treatment relies on the use of antimicrobials, alternative interventions are of environmental and economic interest. As for other bacterial diseases, environmental factors like water parameters play a crucial role in the development of RTFS. In this study, we investigated the effect of either increased water salinity [1% (10 g L−1)] or water temperature (18°C ± 1°C) on the development of RTFS following challenge with F. psychrophilum in rainbow trout fry under experimental conditions (either bath challenge or co-habitation challenge). When implemented after bath challenge, the salinity treatment delayed the appearance of clinical disease, while the temperature treatment reduced the incubation time to appearance of clinical disease. Given the positive effect of increased salinity, we further assessed the effect of the salinity treatment on disease transmission when the fish were exposed to co-habitation challenge. While intraperitoneally injected seeder fish died within 2 weeks independent of salinity, cohabitant fish kept in water with 1% salinity had a significant increase in survival (42.6%) compared to the positive controls (17.9%). Infected dead and moribund fish were confirmed positive for F. psychrophilum. Increasing water salinity thus delayed and partly prevented RTFS. In applied terms, such a delay may give time to achieve antimicrobial susceptibility test (AST) results and initiate treatment before reaching heavy mortalities in a fish batch. Further studies should evaluate the robustness of the preventive effect of this approach, its effect on the microbial communities (fish and farm environment) and whether it could be combined with other measures (e.g., phage therapy). The effect of the warm water was surprising, as F. psychrophilum infections are reported at colder temperatures.

嗜冷黄杆菌(Flavobacterium psychrophilum)是虹鳟鱼鱼苗综合征(RTFS)和细菌性冷水病(BCWD)的病原,在世界范围内的鲑鱼养殖中引起不同程度的疾病和死亡。由于其治疗依赖于抗菌素的使用,其他干预措施具有环境和经济利益。对于其他细菌性疾病,水参数等环境因素对RTFS的发展起着至关重要的作用。在本研究中,我们研究了在实验条件下(浴式挑战或同居挑战),增加水盐度[1% (10 g L-1)]或水温(18°C±1°C)对虹鳟鱼鱼苗中嗜冷f菌攻毒后RTFS发育的影响。在洗浴后实施,盐度处理延迟了临床疾病的出现,而温度处理缩短了临床疾病出现的潜伏期。考虑到盐度增加的积极影响,我们进一步评估了盐度处理对鱼暴露于同居挑战时疾病传播的影响。虽然与盐度无关的腹腔注射种鱼在2周内死亡,但与阳性对照(17.9%)相比,生活在盐度为1%的水中的共生鱼的存活率显著提高(42.6%)。受感染的死鱼和死鱼均被证实对嗜冷f菌呈阳性反应。因此,增加的水盐度延迟并部分阻止了RTFS。在实际应用中,这样的延迟可能会有时间获得抗菌药物敏感性试验(AST)结果,并在一批鱼出现严重死亡之前开始治疗。进一步的研究应该评估这种方法预防效果的稳健性,它对微生物群落(鱼和农场环境)的影响,以及它是否可以与其他措施(如噬菌体治疗)联合使用。温水的效果令人惊讶,因为据报道,嗜冷f菌感染是在较冷的温度下发生的。
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引用次数: 0
Machine Learning-Aided Meta-Analysis Reveals Changes in Penaeus vannamei Gut Bacterial Communities Upon Dietary Supplementation-Induced Immunostimulation 机器学习辅助荟萃分析揭示了饮食补充诱导免疫刺激后凡纳滨对虾肠道细菌群落的变化。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-13 DOI: 10.1111/jfd.70043
John Paul Matthew D. Guzman, Samuel Mwakisha Mwamburi, Supatcha Lurkpranee, Keiichiro Koiwai, Hidehiro Kondo, Ikuo Hirono

Gut bacterial communities play a key role in shrimp health; thus, their modulation has been a target of dietary supplements which also function in enhancing disease and stress resistance of shrimp. However, this also raised the question of whether immunostimulants yield distinct changes in the gut bacterial composition or whether there are consistent features across all treatments. Here, we performed a machine learning-aided meta-analysis of 16S rRNA gut bacterial community studies of immunostimulants for Penaeus vannamei. Sequence reads from the selected studies were obtained and processed through bioinformatics tools. While beta diversity analysis suggests similarities between the normal, infected and stimulated shrimp, alpha diversity indices showed higher species richness in the gut bacterial communities of shrimp fed with immunostimulants. Specific beneficial taxa were enriched upon immunostimulation, while potentially pathogenic taxa decreased in abundance. Random forest modelling also identified key predictor taxa which may be used to classify gut bacterial communities based on immune status, type of immunostimulant and the specific immunostimulant. Despite some shared patterns in differential abundance—having decreased relative abundances of Photobacterium and other members of Gammaproteobacteria—the influence of immunostimulation on gut bacterial community composition was type- and treatment-specific, as evident in the distinct abundance profiles of the predictor taxa. Functional prediction analysis also showed distinct pathways enriched in immunostimulated shrimp, as influenced by the type of the immunostimulant. This study highlighted the specific impacts of dietary supplementation-induced immunostimulation on gut bacterial communities and identified key features in immunostimulated shrimp which provide a novel perspective on the interplay between gut bacterial community and immunity.

肠道细菌群落在虾的健康中起着关键作用;因此,它们的调节一直是膳食补充剂的目标,也有增强对虾抗病和抗逆性的作用。然而,这也提出了一个问题,即免疫刺激剂是否会对肠道细菌组成产生明显的变化,或者是否在所有治疗中都有一致的特征。在这里,我们对凡纳滨对虾免疫刺激剂的16S rRNA肠道细菌群落研究进行了机器学习辅助荟萃分析。从选定的研究中获得序列读数并通过生物信息学工具进行处理。β多样性分析显示正常、感染和刺激对虾之间存在相似之处,α多样性指数显示免疫刺激对虾肠道细菌群落的物种丰富度更高。特异性有益类群在免疫刺激下增加,而潜在致病类群则减少。随机森林模型还确定了关键的预测类群,可用于根据免疫状态、免疫刺激剂类型和特异性免疫刺激剂对肠道细菌群落进行分类。尽管在差异丰度上有一些共同的模式——光杆菌和其他γ变形杆菌成员的相对丰度降低——免疫刺激对肠道细菌群落组成的影响是类型和治疗特异性的,正如预测分类群的不同丰度曲线所示。功能预测分析还显示,受免疫刺激剂类型的影响,免疫刺激对虾中富集了不同的途径。本研究强调了饲料补充诱导的免疫刺激对肠道细菌群落的具体影响,并确定了免疫刺激对虾的关键特征,为肠道细菌群落与免疫之间的相互作用提供了新的视角。
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引用次数: 0
Editorial for Special Issue 特刊社论。
IF 2.2 3区 农林科学 Q2 FISHERIES Pub Date : 2025-08-12 DOI: 10.1111/jfd.70040
Ha Thanh Dong, Jorge Del-Pozo, David J. Speare
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引用次数: 0
期刊
Journal of fish diseases
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