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A 3D semantic segmentation network for accurate neuronal soma segmentation 用于精确神经元体节分割的三维语义分割网络
IF 2.3 3区 医学 Q2 OPTICS Pub Date : 2024-07-19 DOI: 10.1142/s1793545824500184
Li Ma, Qi Zhong, Yezi Wang, Xiaoquan Yang, Qian Du
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引用次数: 0
In vivo fluorescence flow cytometry reveals that the nanoparticle tumor vaccine OVA@HA-PEI effectively clears circulating tumor cells 体内荧光流式细胞仪显示,纳米颗粒肿瘤疫苗 OVA@HA-PEI 能有效清除循环肿瘤细胞
IF 2.3 3区 医学 Q2 OPTICS Pub Date : 2024-07-19 DOI: 10.1142/s1793545824500172
Wei Jin, Yuting Fu, Sisi Ge, Han Sun, K. Pang, Xunbin Wei
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引用次数: 0
Multi-class classification of pathological myopia based on fundus photography 根据眼底摄影对病理性近视进行多级分类
IF 2.3 3区 医学 Q2 OPTICS Pub Date : 2024-07-19 DOI: 10.1142/s1793545824500160
Jiaqing Zhao, Guogang Cao, Jiangnan He, Cuixia Dai
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引用次数: 0
Recent Advances in Near-infrared Photobiomodulation for the Intervention of Acquired Brain Injury 用于后天性脑损伤干预的近红外光生物调制技术的最新进展
IF 2.3 3区 医学 Q2 OPTICS Pub Date : 2024-07-19 DOI: 10.1142/s1793545824300052
Yujing Huang, Yujing Zhang, Chen Yang, Mengze Xu, Zhen Yuan
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引用次数: 0
A generalized deep neural network approach for improving resolution of fluorescence microscopy images 提高荧光显微镜图像分辨率的广义深度神经网络方法
IF 2.3 3区 医学 Q2 OPTICS Pub Date : 2024-07-10 DOI: 10.1142/s1793545824500111
Zichen Jin, Qing He, Yang Liu, Kaige Wang
Deep learning is capable of greatly promoting the progress of super-resolution imaging technology in terms of imaging and reconstruction speed, imaging resolution, and imaging flux. This paper proposes a deep neural network based on a generative adversarial network (GAN). The generator employs a U-Net-based network, which integrates DenseNet for the downsampling component. The proposed method has excellent properties, for example, the network model is trained with several different datasets of biological structures; the trained model can improve the imaging resolution of different microscopy imaging modalities such as confocal imaging and wide-field imaging; and the model demonstrates a generalized ability to improve the resolution of different biological structures even out of the datasets. In addition, experimental results showed that the method improved the resolution of caveolin-coated pits (CCPs) structures from 264[Formula: see text]nm to 138[Formula: see text]nm, a 1.91-fold increase, and nearly doubled the resolution of DNA molecules imaged while being transported through microfluidic channels.
深度学习能够在成像与重建速度、成像分辨率和成像通量等方面极大地推动超分辨率成像技术的进步。本文提出了一种基于生成对抗网络(GAN)的深度神经网络。生成器采用了基于 U-Net 的网络,并集成了 DenseNet 作为下采样组件。所提出的方法具有优良的特性,例如,该网络模型是用多个不同的生物结构数据集训练出来的;训练出来的模型可以提高不同显微成像模式(如共焦成像和宽视场成像)的成像分辨率;该模型展示了一种泛化能力,即使在数据集之外,也能提高不同生物结构的分辨率。此外,实验结果表明,该方法将洞穴素包覆坑(CCPs)结构的分辨率从264[式:见正文]nm提高到138[式:见正文]nm,提高了1.91倍,并将DNA分子在微流体通道中传输时的成像分辨率提高了近一倍。
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引用次数: 0
Label-free in-vivo classification and tracking of red blood cells and platelets using Dynamic-YOLOv4 network 使用动态-YOLOv4 网络对红细胞和血小板进行无标记体内分类和跟踪
IF 2.5 3区 医学 Q2 Medicine Pub Date : 2024-05-25 DOI: 10.1142/s1793545824500093
Caizhong Guan, Bin He, Hongting Zhang, Shangpan Yang, Yang Xu, Honglian Xiong, Yaguang Zeng, Mingyi Wang, Xunbin Wei

In-vivo flow cytometry is a noninvasive real-time diagnostic technique that facilitates continuous monitoring of cells without perturbing their natural biological environment, which renders it a valuable tool for both scientific research and clinical applications. However, the conventional approach for improving classification accuracy often involves labeling cells with fluorescence, which can lead to potential phototoxicity. This study proposes a label-free in-vivo flow cytometry technique, called dynamic YOLOv4 (D-YOLOv4), which improves classification accuracy by integrating absorption intensity fluctuation modulation (AIFM) into YOLOv4 to demodulate the temporal features of moving red blood cells (RBCs) and platelets. Using zebrafish as an experimental model, the D-YOLOv4 method achieved average precisions (APs) of 0.90 for RBCs and 0.64 for thrombocytes (similar to platelets in mammals), resulting in an overall AP of 0.77. These scores notably surpass those attained by alternative network models, thereby demonstrating that the combination of physical models with neural networks provides an innovative approach toward developing label-free in-vivo flow cytometry, which holds promise for diverse in-vivo cell classification applications.

体内流式细胞术是一种无创实时诊断技术,可在不干扰细胞自然生物环境的情况下对细胞进行连续监测,因此是科学研究和临床应用的重要工具。然而,提高分类准确性的传统方法往往涉及用荧光标记细胞,这可能会导致潜在的光毒性。本研究提出了一种称为动态 YOLOv4(D-YOLOv4)的无标记活体流式细胞仪技术,通过将吸收强度波动调制(AIFM)整合到 YOLOv4 中来解调移动红细胞(RBC)和血小板的时间特征,从而提高分类准确性。以斑马鱼为实验模型,D-YOLOv4 方法对红细胞和血小板(类似于哺乳动物的血小板)的平均精确度(AP)分别达到了 0.90 和 0.64,总体精确度为 0.77。这些分数明显超过了其他网络模型所能达到的分数,从而证明物理模型与神经网络的结合为开发无标记体内流式细胞仪提供了一种创新方法,为各种体内细胞分类应用带来了希望。
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引用次数: 0
Exhaustive Review of Acceleration Strategies for Monte Carlo Simulations in Photon Transit 光子过境蒙特卡洛模拟加速策略详尽评述
IF 2.5 3区 医学 Q2 Medicine Pub Date : 2024-05-23 DOI: 10.1142/s1793545824300040
Louzhe Xu, Zijie Zhu, Ting Li
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引用次数: 0
Unified deep learning model for predicting fundus fluorescein angiography image from fundus structure image 从眼底结构图像预测眼底荧光素血管造影图像的统一深度学习模型
IF 2.5 3区 医学 Q2 Medicine Pub Date : 2024-03-22 DOI: 10.1142/s1793545824500032
Yiwei Chen, Yi He, Hong Ye, Lina Xing, Xin Zhang, Guohua Shi

The prediction of fundus fluorescein angiography (FFA) images from fundus structural images is a cutting-edge research topic in ophthalmological image processing. Prediction comprises estimating FFA from fundus camera imaging, single-phase FFA from scanning laser ophthalmoscopy (SLO), and three-phase FFA also from SLO. Although many deep learning models are available, a single model can only perform one or two of these prediction tasks. To accomplish three prediction tasks using a unified method, we propose a unified deep learning model for predicting FFA images from fundus structure images using a supervised generative adversarial network. The three prediction tasks are processed as follows: data preparation, network training under FFA supervision, and FFA image prediction from fundus structure images on a test set. By comparing the FFA images predicted by our model, pix2pix, and CycleGAN, we demonstrate the remarkable progress achieved by our proposal. The high performance of our model is validated in terms of the peak signal-to-noise ratio, structural similarity index, and mean squared error.

从眼底结构图像预测眼底荧光素血管造影(FFA)图像是眼科图像处理领域的前沿研究课题。预测包括通过眼底照相机成像估算 FFA、通过扫描激光眼底镜(SLO)估算单相 FFA 和通过 SLO 估算三相 FFA。虽然目前有许多深度学习模型,但单一模型只能完成其中的一两项预测任务。为了用一种统一的方法完成三项预测任务,我们提出了一种统一的深度学习模型,利用有监督的生成对抗网络从眼底结构图像中预测 FFA 图像。三项预测任务的处理过程如下:数据准备、FFA 监督下的网络训练以及在测试集上从眼底结构图像预测 FFA 图像。通过比较我们的模型、pix2pix 和 CycleGAN 预测的 FFA 图像,我们证明了我们的建议所取得的显著进步。我们模型的高性能在峰值信噪比、结构相似性指数和均方误差方面都得到了验证。
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引用次数: 0
Review of polarization-based technology for biomedical applications 基于偏振技术的生物医学应用回顾
IF 2.5 3区 医学 Q2 Medicine Pub Date : 2024-03-22 DOI: 10.1142/s1793545824300027
Caizhong Guan, Nan Zeng, Honghui He

Polarimetry is a powerful optical tool in the biomedical field, providing more comprehensive information on the sub-wavelength micro-physical structure of a sample than traditional light intensity measurement techniques. This review summarizes the concepts and techniques of polarization and its biomedical applications. Specifically, we first briefly describe the basic principles of polarized light and the Mueller matrix (MM) decomposition method, followed by some research progress of polarimetric measurement techniques in recent years. Finally, we introduce some studies on biological tissues and cells, and then illustrate the application value of polarization optical method.

偏振测量法是生物医学领域的一种强大光学工具,与传统的光强测量技术相比,它能提供有关样品亚波长微物理结构的更全面信息。本综述总结了偏振及其生物医学应用的概念和技术。具体来说,我们首先简要介绍了偏振光的基本原理和穆勒矩阵(MM)分解方法,然后介绍了近年来偏振测量技术的一些研究进展。最后,我们介绍了一些关于生物组织和细胞的研究,并说明了偏振光学方法的应用价值。
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引用次数: 0
Automatic detection method of bladder tumor cells based on color and shape features 基于颜色和形状特征的膀胱肿瘤细胞自动检测方法
IF 2.5 3区 医学 Q2 Medicine Pub Date : 2024-03-13 DOI: 10.1142/s1793545824500056
Zitong Zhao, Yanbo Wang, Jiaqi Chen, Mingjia Wang, Shulong Feng, Jin Yang, Nan Song, Jinyu Wang, Ci Sun
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引用次数: 0
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Journal of Innovative Optical Health Sciences
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