首页 > 最新文献

Journal of Molecular Structure最新文献

英文 中文
Design, synthesis, structural characterization, and DFT approach of a new bis-Schiff base-derived sulfonyldianiline: Thermal and nonlinear optical performances in a fluid system 一种新型双希夫碱衍生磺酰二胺的设计、合成、结构表征和DFT方法:流体系统的热学和非线性光学性能
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-06 DOI: 10.1016/j.molstruc.2026.145604
Amir Hussein Ali , Ahmed Majeed Jassem , Qusay M.A. Hassan , C.A. Emshary , H.A. Sultan , Wisam A. Radhi
The synthesis, structural elucidation, thermal calculations, and nonlinear optical (NLO) activity of a new bis-Schiff base-derived sulfonyldianiline, (Z)-3-((4-((4-((E)-(4-(benzyloxy) benzylidene) amino) phenyl) sulfonyl)phenyl)imino)-2-indolinone (5) (C34H25N3O4S) using spectroscopic, thermal, and NLO techniques, are reported. The structure of the entitled compound (5) was deduced based on NMR, FT-IR, mass, and UV–visible spectra. The DFT-calculations in terms of the NLO descriptors such as mean polarizability, αo (esu), and hyperpolarizability, β (esu) are investigated. The thermal properties viz., thermal conductivity (K), viscosity (ηi), and specific heat capacity (cp) with values of 0.21-0.27 W/mK, 1.3 × 10−3 Pa.sec at 27.7 °C, and 1631 J/Kg. K respectively, are obtained. Heat conduction in the sample studied using two-dimensional transient heat conduction model that is solved using Finite Difference Method (FDM). The NLO properties of bis-Schiff base chromophore (5) are studied via the passage of the laser beam (473 nm) based on the diffraction patterns (DPs) viz., beam power input, its wave front, and temporal evolution. The resulted diffraction patterns (DPs) are assessed numerically using Fresnel-Kirchhoff integral based on Fraunhofer approximation solved using MATLAB system. The numerically obtained results agree well with experimental findings. In addition, the all-optical switching (AOS) is evaluated using three laser beams. Overall, the results indicate that the target chromophore (5) is recommended for upcoming optical applications such as AOS viz., static and dynamic.
本文报道了一种新的双希夫碱衍生的磺基二苯胺(Z)-3-((4-(4-(E)-(4-(苯氧基)苄基)氨基)苯基)磺基苯基)亚氨基)-2-吲哚啉酮(5)(C34H25N3O4S)的合成、结构解析、热计算和非线性光学活性。通过NMR、FT-IR、质谱和紫外可见光谱分析,推导了化合物(5)的结构。研究了NLO描述符(平均极化率αo (esu)和超极化率β (esu))的dft计算。热性能,即导热系数(K),粘度(ηi)和比热容(cp)的值为0.21-0.27 W/mK, 1.3 × 10−3 Pa。温度为27.7℃,温度为1631 J/Kg。分别得到K。采用二维瞬态热传导模型对试样的热传导进行了研究,该模型采用有限差分法求解。基于衍射图(DPs),即光束功率输入、波前和时间演化,研究了双希夫碱发色团(5)在473 nm激光照射下的NLO特性。利用MATLAB系统求解基于弗劳恩霍夫近似的菲涅耳-基尔霍夫积分,对衍射图进行数值评价。数值计算结果与实验结果吻合较好。此外,利用三束激光对全光开关(AOS)进行了评价。总体而言,结果表明目标发色团(5)可用于未来的光学应用,如AOS,即静态和动态。
{"title":"Design, synthesis, structural characterization, and DFT approach of a new bis-Schiff base-derived sulfonyldianiline: Thermal and nonlinear optical performances in a fluid system","authors":"Amir Hussein Ali ,&nbsp;Ahmed Majeed Jassem ,&nbsp;Qusay M.A. Hassan ,&nbsp;C.A. Emshary ,&nbsp;H.A. Sultan ,&nbsp;Wisam A. Radhi","doi":"10.1016/j.molstruc.2026.145604","DOIUrl":"10.1016/j.molstruc.2026.145604","url":null,"abstract":"<div><div>The synthesis, structural elucidation, thermal calculations, and nonlinear optical (NLO) activity of a new bis-Schiff base<strong>-</strong>derived sulfonyldianiline, (<em>Z</em>)-3-((4-((4-((<em>E</em>)-(4-(benzyloxy) benzylidene) amino) phenyl) sulfonyl)phenyl)imino)-2-indolinone (<strong>5</strong>) (C<sub>34</sub>H<sub>25</sub>N<sub>3</sub>O<sub>4</sub>S) using spectroscopic, thermal, and NLO techniques, are reported. The structure of the entitled compound (<strong>5</strong>) was deduced based on NMR, FT-IR, mass, and UV–visible spectra. The DFT-calculations in terms of the NLO descriptors such as mean polarizability, α<sub>o</sub> (esu), and hyperpolarizability, β (esu) are investigated. The thermal properties viz., thermal conductivity (K), viscosity (η<sub>i</sub>), and specific heat capacity (c<sub>p</sub>) with values of 0.21-0.27 W/mK, 1.3 × 10<sup>−3</sup> Pa.sec at 27.7 °C, and 1631 J/Kg. K respectively, are obtained. Heat conduction in the sample studied using two-dimensional transient heat conduction model that is solved using Finite Difference Method (FDM). The NLO properties of bis-Schiff base chromophore (<strong>5</strong>) are studied <em>via</em> the passage of the laser beam (473 nm) based on the diffraction patterns (DPs) viz., beam power input, its wave front, and temporal evolution. The resulted diffraction patterns (DPs) are assessed numerically using Fresnel-Kirchhoff integral based on Fraunhofer approximation solved using MATLAB system. The numerically obtained results agree well with experimental findings. In addition, the all-optical switching (AOS) is evaluated using three laser beams. Overall, the results indicate that the target chromophore (<strong>5</strong>) is recommended for upcoming optical applications such as AOS viz., static and dynamic.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145604"},"PeriodicalIF":4.7,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis, spectral characterization, structures, and computation of 1-methyl-/1,3-dimethyl-5-(p-Nitro-phenylazo)-6-aminouracils and Silver(I) complexes 1-甲基-/1,3-二甲基-5-(对硝基苯基偶氮)-6-氨基尿嘧啶和银(I)配合物的合成、光谱表征、结构和计算
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-06 DOI: 10.1016/j.molstruc.2026.145595
Nishan Das , Abid Hossain , Brojogopal Chand , Susanta Ghanta , Lesław Sieroń , Waldemar Maniukiewicz , Tarun K. Misra
Two distinct crystal structures of a newly synthesized 1-methyl-5-(p-nitro-phenylazo)-6-aminouracil (LH3) and the previously known 1,3-dimethyl-5-(p-nitro-phenylazo)-6-aminouracil (LH2) were investigated. While LH3 has tetragonal symmetry with space group I41/a, LH2 has monoclinic symmetry with space group P21/c. Interestingly, unlike LH3, the projection of the azo-function relative to the 6-amino group of uracil in LH2 is entirely reversed. Both are E-conformer and planar and the plane of angle between the phenyl and the uracil rings reveals that LH2 (5.78(5)°) is more planar than LH3 (= 17.93(5)°). They are supposed to be formed distorted tetrahedral Ag(I) nitrate complexes, [AgI(LH3)(NO3)(H2O)] (1) with LH3 and [AgI(LH2)(NO3)(H2O)].4H2O (2) with LH2; the exact masses are 476.27 and 563.38, respectively, obtained from an ESI-mass spectrometry study. The complexes exhibit a strong stretching frequency of ν(NO3) at 1384 cm-1. The DFT structural optimizations of all the compounds were studied using the B3LYP method in DMSO solvent. The theoretically extracted bond parameters of the ligands are found in good agreement with their crystal structure values; for instance, the RMSD values for the azo-bond lengths are 0.0004 for the LH3 and 0.003 for the LH2. According to the DFT analysis, the ligands are preferably coordinated to Ag(I) through azo-N and uracil-O. The other two coordinating ligands are a water molecule and a nitrate ion. The Ag(I)-O(nitrate) bond lengths of 2.38385 Å for 1 and 2.56253 Å for 2, are comparable to values found in the literature. The coordination sites are supported by the molecular electrostatic potentials (MEP) and natural bond orbital (NBO) analysis. The NBO charges on the uracil-O and azo-N atoms increase from -0.574 and -0.199 to -0.653 and -0.256 in 1 and -0.593 and -0.144 to -0.636 and -0.202 in 2. In addition, due to the coordination environment the developed NBO charges on Ag-atom is 0.687 e for 1 and 0.737 e for 2.
研究了新合成的1-甲基-5-(对硝基苯基偶氮)-6-氨基尿嘧啶(LH3)和已知的1,3-二甲基-5-(对硝基苯基偶氮)-6-氨基尿嘧啶(LH2)的两种不同晶体结构。LH3与空间群I41/a具有四方对称,LH2与空间群P21/c具有单斜对称。有趣的是,与LH3不同,LH2中偶氮功能相对于尿嘧啶6氨基的投射完全相反。LH2(5.78(5)°)比LH3(= 17.93(5)°)更平面。它们应该与LH3和[AgI(LH2)(NO3)(H2O)]形成扭曲的四面体Ag(I)硝酸络合物[AgI(LH3)(NO3)(H2O)](1)。4H2O(2)与LH2;精确的质量分别是476.27和563.38,这是通过esi质谱分析得到的。该配合物在1384 cm-1处有很强的ν(NO3)拉伸频率。用B3LYP法在DMSO溶剂中研究了所有化合物的DFT结构优化。理论提取的配体键参数与晶体结构值吻合较好;例如,偶氮键长度的RMSD值对于LH3为0.0004,对于LH2为0.003。根据DFT分析,配体通过偶氮氮和尿嘧啶氧与Ag(I)配位效果较好。另外两个配位体是一个水分子和一个硝酸盐离子。Ag(I)-O(硝酸盐)键长为2.38385 Å(1)和2.56253 Å(2),与文献中发现的值相当。分子静电势(MEP)和自然键轨道(NBO)分析支持了配位位点。在1和2中,尿嘧啶- o和偶氮- n原子上的NBO电荷从-0.574和-0.199增加到-0.653和-0.256,从-0.593和-0.144增加到-0.636和-0.202。此外,由于配位环境的影响,ag原子上发育的NBO电荷1为0.687 e, 2为0.737 e。
{"title":"Synthesis, spectral characterization, structures, and computation of 1-methyl-/1,3-dimethyl-5-(p-Nitro-phenylazo)-6-aminouracils and Silver(I) complexes","authors":"Nishan Das ,&nbsp;Abid Hossain ,&nbsp;Brojogopal Chand ,&nbsp;Susanta Ghanta ,&nbsp;Lesław Sieroń ,&nbsp;Waldemar Maniukiewicz ,&nbsp;Tarun K. Misra","doi":"10.1016/j.molstruc.2026.145595","DOIUrl":"10.1016/j.molstruc.2026.145595","url":null,"abstract":"<div><div>Two distinct crystal structures of a newly synthesized 1-methyl-5-(<em>p</em>-nitro-phenylazo)-6-aminouracil (<strong>LH<sub>3</sub></strong>) and the previously known 1,3-dimethyl-5-(<em>p</em>-nitro-phenylazo)-6-aminouracil (<strong>LH<sub>2</sub></strong>) were investigated. While LH<sub>3</sub> has tetragonal symmetry with space group I4<sub>1</sub>/a, LH<sub>2</sub> has monoclinic symmetry with space group P2<sub>1</sub>/c. Interestingly, unlike LH<sub>3</sub>, the projection of the azo-function relative to the 6-amino group of uracil in LH<sub>2</sub> is entirely reversed. Both are <em>E</em>-conformer and planar and the plane of angle between the phenyl and the uracil rings reveals that LH<sub>2</sub> (5.78(5)°) is more planar than LH<sub>3</sub> (= 17.93(5)°). They are supposed to be formed distorted tetrahedral Ag(I) nitrate complexes, [Ag<sup>I</sup>(LH<sub>3</sub>)(NO<sub>3</sub>)(H<sub>2</sub>O)] (<strong>1</strong>) with LH<sub>3</sub> and [Ag<sup>I</sup>(LH<sub>2</sub>)(NO<sub>3</sub>)(H<sub>2</sub>O)].4H<sub>2</sub>O (<strong>2</strong>) with LH<sub>2</sub>; the exact masses are 476.27 and 563.38, respectively, obtained from an ESI-mass spectrometry study. The complexes exhibit a strong stretching frequency of ν(NO<sub>3</sub>) at 1384 cm<sup>-1</sup>. The DFT structural optimizations of all the compounds were studied using the B3LYP method in DMSO solvent. The theoretically extracted bond parameters of the ligands are found in good agreement with their crystal structure values; for instance, the RMSD values for the azo-bond lengths are 0.0004 for the LH<sub>3</sub> and 0.003 for the LH<sub>2</sub>. According to the DFT analysis, the ligands are preferably coordinated to Ag(I) through azo-N and uracil-O. The other two coordinating ligands are a water molecule and a nitrate ion. The Ag(I)-O(nitrate) bond lengths of 2.38385 Å for <strong>1</strong> and 2.56253 Å for <strong>2</strong>, are comparable to values found in the literature. The coordination sites are supported by the molecular electrostatic potentials (MEP) and natural bond orbital (NBO) analysis. The NBO charges on the uracil-O and azo-N atoms increase from -0.574 and -0.199 to -0.653 and -0.256 in <strong>1</strong> and -0.593 and -0.144 to -0.636 and -0.202 in <strong>2</strong>. In addition, due to the coordination environment the developed NBO charges on Ag-atom is 0.687 e for <strong>1</strong> and 0.737 e for <strong>2</strong>.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145595"},"PeriodicalIF":4.7,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192674","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The impact of supramolecular ordering on the thermotropic behavior of asymmetrical azomethine liquid crystals 超分子有序对不对称亚甲基液晶热致性的影响
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-06 DOI: 10.1016/j.molstruc.2026.145605
Manuela Maria Iftime, Ramona Lungu, Dana Bejan, Sergiu Shova
The paper reports the impact of positional isomerism on the thermotropic behavior of two asymmetrical azomethines bearing a chlorine substituent and a flexible butyl chain. The isomers were synthesized via acid-catalyzed condensation and structurally characterized by FTIR, NMR, UV-vis spectroscopy, and single-crystal X-ray diffraction (SC-XRD). Thermal investigations using TGA, DSC, and POM revealed that the compounds exhibit enantiotropic or monotropic liquid crystalline behavior, forming Smectic A and Smectic B mesophases during cooling. It was demonstrated that the orientation of the imine linkage significantly influences the conjugation degree of the rigid core and the strength of intermolecular forces. Specifically, the isomer with more extended conjugation stabilizes the higher-ordered SB phase, while conformational disorder in the flexible chains, favors the lower-ordered SA phase.
本文报道了位置异构对含氯取代基和柔性丁基链的两种不对称偶氮亚胺的热致性的影响。采用酸催化缩合的方法合成了该异构体,并用FTIR、NMR、UV-vis光谱和单晶x射线衍射(SC-XRD)对其进行了结构表征。热分析(TGA, DSC和POM)表明,化合物表现出对映性或单向液晶行为,在冷却过程中形成Smectic A和Smectic B中间相。结果表明,亚胺键的取向对刚性核的共轭度和分子间力的强度有显著影响。具体来说,具有更广泛共轭的异构体稳定了高阶的SB相,而柔性链中的构象紊乱有利于低阶的SA相。
{"title":"The impact of supramolecular ordering on the thermotropic behavior of asymmetrical azomethine liquid crystals","authors":"Manuela Maria Iftime,&nbsp;Ramona Lungu,&nbsp;Dana Bejan,&nbsp;Sergiu Shova","doi":"10.1016/j.molstruc.2026.145605","DOIUrl":"10.1016/j.molstruc.2026.145605","url":null,"abstract":"<div><div>The paper reports the impact of positional isomerism on the thermotropic behavior of two asymmetrical azomethines bearing a chlorine substituent and a flexible butyl chain. The isomers were synthesized <em>via</em> acid-catalyzed condensation and structurally characterized by FTIR, NMR, UV-vis spectroscopy, and single-crystal X-ray diffraction (SC-XRD). Thermal investigations using TGA, DSC, and POM revealed that the compounds exhibit enantiotropic or monotropic liquid crystalline behavior, forming Smectic A and Smectic B mesophases during cooling. It was demonstrated that the orientation of the imine linkage significantly influences the conjugation degree of the rigid core and the strength of intermolecular forces. Specifically, the isomer with more extended conjugation stabilizes the higher-ordered S<sub>B</sub> phase, while conformational disorder in the flexible chains, favors the lower-ordered S<sub>A</sub> phase.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145605"},"PeriodicalIF":4.7,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A uranyl carboxyphosphonate framework exhibiting luminescence intensity, luminescence lifetime and SHG triple-response 一种具有发光强度、发光寿命和SHG三重响应的羧膦酸铀酰骨架
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-06 DOI: 10.1016/j.molstruc.2026.145597
Ge-Hua Wen, Hui Chen
To date, no reports have been documented on triple-response temperature sensing based on luminescence intensity, luminescence lifetime, and nonlinear optics (NLO) in coordination polymers (CPs) or metal-organic frameworks (MOFs). In this study, we successfully synthesized a three-dimensional (3D) uranyl carboxyphosphonate framework, (ImH)2[(UO2)5(2-pmb)4] (1), by introducing imidazole (Im) molecules into the reaction system of 2-(phosphonomethyl)benzoic acid (2-pmbH3) with uranyl ions. Compound 1 crystallizes in the polar space group Cmc21, featuring a 3D framework constructed by uranyl phosphonate chains along the b-axis interconnected with trinuclear uranyl carboxylate units within the ac-plane. Protonated imidazole molecules serve as counterions, orderly arranged between uranyl chains along the b-direction. The shortest U···U distance within the structure is 4.91 Å. Photoluminescence studies reveal that compound 1 exhibits characteristic green luminescence at room temperature, demonstrating a favorable quantum yield (8.46%) and an exceptionally long luminescence lifetime (4164.3 μs). Furthermore, its second harmonic generation (SHG) response of 0.67 × KDP at room temperature confirms the non-centrosymmetric structure. Temperature-dependent studies demonstrate that compound 1 enables triple-response optical thermometry through luminescence intensity (80–300 K), luminescence lifetime (80–300 K), and second harmonic generation (SHG) signal (80–160 K).
到目前为止,还没有关于配位聚合物(CPs)或金属有机框架(mof)中基于发光强度、发光寿命和非线性光学(NLO)的三响应温度传感的报道。在本研究中,我们通过将咪唑(Im)分子引入到2-(磷甲乙基)苯甲酸(2- pmbh3)与铀酰离子的反应体系中,成功合成了一个三维(3D)铀酰羧基膦酸盐框架(ImH)2[(UO2)5(2-pmb)4](1)。化合物1在极性空间基Cmc21中结晶,具有由沿b轴的磷酸铀酰链与ac平面内的三核羧酸铀酰单元相互连接而成的三维框架。质子化的咪唑分子作为反离子,沿b方向有序地排列在铀酰链之间。结构内最短的U···U距离为4.91 Å。光致发光研究表明,化合物1在室温下表现出典型的绿色发光,具有良好的量子产率(8.46%)和超长的发光寿命(4164.3 μs)。此外,其室温下的二次谐波产生(SHG)响应为0.67 × KDP,证实了其非中心对称结构。温度依赖性研究表明,化合物1可以通过发光强度(80-300 K)、发光寿命(80-300 K)和二次谐波产生(SHG)信号(80-160 K)实现三响应光学测温。
{"title":"A uranyl carboxyphosphonate framework exhibiting luminescence intensity, luminescence lifetime and SHG triple-response","authors":"Ge-Hua Wen,&nbsp;Hui Chen","doi":"10.1016/j.molstruc.2026.145597","DOIUrl":"10.1016/j.molstruc.2026.145597","url":null,"abstract":"<div><div>To date, no reports have been documented on triple-response temperature sensing based on luminescence intensity, luminescence lifetime, and nonlinear optics (NLO) in coordination polymers (CPs) or metal-organic frameworks (MOFs). In this study, we successfully synthesized a three-dimensional (3D) uranyl carboxyphosphonate framework, (ImH)<sub>2</sub>[(UO<sub>2</sub>)<sub>5</sub>(2-pmb)<sub>4</sub>] (<strong>1</strong>), by introducing imidazole (Im) molecules into the reaction system of 2-(phosphonomethyl)benzoic acid (2-pmbH<sub>3</sub>) with uranyl ions. Compound <strong>1</strong> crystallizes in the polar space group <em>Cmc</em>2<sub>1</sub>, featuring a 3D framework constructed by uranyl phosphonate chains along the <em>b</em>-axis interconnected with trinuclear uranyl carboxylate units within the <em>ac</em>-plane. Protonated imidazole molecules serve as counterions, orderly arranged between uranyl chains along the <em>b</em>-direction. The shortest U···U distance within the structure is 4.91 Å. Photoluminescence studies reveal that compound <strong>1</strong> exhibits characteristic green luminescence at room temperature, demonstrating a favorable quantum yield (8.46%) and an exceptionally long luminescence lifetime (4164.3 μs). Furthermore, its second harmonic generation (SHG) response of 0.67 × KDP at room temperature confirms the non-centrosymmetric structure. Temperature-dependent studies demonstrate that compound <strong>1</strong> enables triple-response optical thermometry through luminescence intensity (80–300 K), luminescence lifetime (80–300 K), and second harmonic generation (SHG) signal (80–160 K).</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145597"},"PeriodicalIF":4.7,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Solvation shell collapse and molecular asymmetry dictate polymorph selection in citric acid 溶剂化、壳坍塌和分子不对称决定了柠檬酸的多晶型选择
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-05 DOI: 10.1016/j.molstruc.2026.145592
Estevão Genito João Macaringue , Tiantian Tao , Yujiang Xie , Weiwei Tang , Junbo Gong
Control over polymorph selection is critical in materials science, yet the molecular mechanisms governing the nucleation of specific crystal forms from solution remain elusive. Citric acid (CA) presents a compelling case of non-classical nucleation where the metastable anhydrous phase dominates outcomes even under conditions thermodynamically favoring the stable monohydrate, violating Ostwald’s rule of stages. Herein, we combine variable-temperature multi-nuclear NMR (1H, 13C), FTIR spectroscopy, and molecular dynamics (MD) simulations to elucidate how site–specific molecular asymmetry dictates this selection. We demonstrate that in dilute solutions, ionization of the terminal carboxyl groups prevents the formation of the cooperative water networks required for the monohydrate lattice, kinetically favoring anhydrous nucleation. As concentration approaches saturation, the system undergoes a solvation shell collapse, shifting toward a neutral, central-mediated self-association regime that generates dense, super-shielded cluster cores. Crucially, we reveal that this specific neutrality enables the terminal carboxyl arms to act as dominant hydration interfaces, capturing the solvent necessary for monohydrate nucleation within incipient clusters. However, this hydration mechanism is thermally fragile: experimental pH profiling and site-specific chemical shift sensitivity analysis (Δδ) demonstrate that elevated temperatures cause reionization by introducing charged defects that destabilize the monohydrate pathway and kinetically limit the system back to anhydrous motif. These findings provide a unified molecular mechanism linking solution speciation with macroscopic phase selection, proposing a framework for site-specific responsiveness that may serve as a model for controlling polymorphism in other complex organic acids through the exploitation of intrinsic molecular asymmetry.
对多晶型选择的控制在材料科学中是至关重要的,然而控制特定晶体形式从溶液成核的分子机制仍然难以捉摸。柠檬酸(CA)是非经典成核的一个引人注目的例子,即使在热力学上有利于稳定的一水化合物的条件下,亚稳无水相也占主导地位,违反了奥斯特瓦尔德阶段规则。在此,我们结合变温多核磁共振(1H, 13C), FTIR光谱和分子动力学(MD)模拟来阐明位点特异性分子不对称性如何决定这种选择。我们证明,在稀溶液中,末端羧基的电离阻止了一水合物晶格所需的合作水网络的形成,在动力学上有利于无水成核。当浓度接近饱和时,系统经历溶剂化壳坍塌,转向中性的、中心介导的自缔合机制,产生致密的、超屏蔽的簇核。至关重要的是,我们揭示了这种特定的中性使得末端羧基臂作为主要的水化界面,在初始簇中捕获一水成核所需的溶剂。然而,这种水化机制是热脆弱的:实验pH谱分析和位点特异性化学位移敏感性分析(Δδ)表明,高温通过引入带电缺陷导致再电离,从而破坏单水途径的稳定性,并在动力学上将系统限制回无水基序。这些发现提供了一个统一的分子机制,将溶液物种形成与宏观相选择联系起来,提出了一个位点特异性响应的框架,可以作为通过利用固有的分子不对称性来控制其他复杂有机酸多态性的模型。
{"title":"Solvation shell collapse and molecular asymmetry dictate polymorph selection in citric acid","authors":"Estevão Genito João Macaringue ,&nbsp;Tiantian Tao ,&nbsp;Yujiang Xie ,&nbsp;Weiwei Tang ,&nbsp;Junbo Gong","doi":"10.1016/j.molstruc.2026.145592","DOIUrl":"10.1016/j.molstruc.2026.145592","url":null,"abstract":"<div><div>Control over polymorph selection is critical in materials science, yet the molecular mechanisms governing the nucleation of specific crystal forms from solution remain elusive. Citric acid (CA) presents a compelling case of non-classical nucleation where the metastable anhydrous phase dominates outcomes even under conditions thermodynamically favoring the stable monohydrate, violating Ostwald’s rule of stages. Herein, we combine variable-temperature multi-nuclear NMR (<sup>1</sup>H, <sup>13</sup>C), FTIR spectroscopy, and molecular dynamics (MD) simulations to elucidate how site–specific molecular asymmetry dictates this selection. We demonstrate that in dilute solutions, ionization of the terminal carboxyl groups prevents the formation of the cooperative water networks required for the monohydrate lattice, kinetically favoring anhydrous nucleation. As concentration approaches saturation, the system undergoes a solvation shell collapse, shifting toward a neutral, central-mediated self-association regime that generates dense, super-shielded cluster cores. Crucially, we reveal that this specific neutrality enables the terminal carboxyl arms to act as dominant hydration interfaces, capturing the solvent necessary for monohydrate nucleation within incipient clusters. However, this hydration mechanism is thermally fragile: experimental pH profiling and site-specific chemical shift sensitivity analysis (Δδ) demonstrate that elevated temperatures cause reionization by introducing charged defects that destabilize the monohydrate pathway and kinetically limit the system back to anhydrous motif. These findings provide a unified molecular mechanism linking solution speciation with macroscopic phase selection, proposing a framework for site-specific responsiveness that may serve as a model for controlling polymorphism in other complex organic acids through the exploitation of intrinsic molecular asymmetry.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145592"},"PeriodicalIF":4.7,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Water and thermal stability Eu-MOF for highly selectively sensing Fe3+ ions and phosphor-converted LED 高选择性感应Fe3+离子和磷转换LED的水和热稳定性Eu-MOF
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-05 DOI: 10.1016/j.molstruc.2026.145596
Jing Li , Xiao-Liang Yang , Jia-Chen Liu , Xin-Ci Wu , Xiao-Tian Wei , Ya-Pan Wu , Xiao-Gang Yang
Lanthanide metal–organic frameworks (Ln-MOFs) are widely recognized as excellent photo-functional materials, primarily owing to their bright emission, long luminescence lifetime, narrow and line-like emission. However, the urgent issues of water stability and thermal quenching still pose formidable challenges. Herein, one novel Ln-MOF [Eu2(CPIA)3(2,2′-bipy)(H2O)3]∙2H2O (Eu-MOF) can be facilely synthesized by the mixture of Eu2O3, (3-(3-carboxyphenyl) isonicotinic acid (H2CPIA) and 2,2′-bipyridine (2,2′-bipy) under hydrothermal conditions. It has a 3D porous framework with two kinds of channels being occupied by the 2,2′-bipy and uncoordinated pyridine rings of CPIA ligands. The water and thermal stability measurements exhibit that the Eu-MOF can maintain 95.50% and 80.05% of its initial luminescent intensity after remaining socked in water for 20 days and being heated to 150 °C, respectively. These physicochemical stability ensure it ideal candidate applied in the detection/recognition of Fe3+ ions, and solid-state lighting.
镧系金属有机骨架(mn - mofs)因其发光明亮、发光寿命长、发光窄且呈线状而被广泛认为是一种优异的光功能材料。然而,水稳定性和热猝灭问题仍然是亟待解决的难题。以Eu2O3、(3-(3-羧基苯基)异烟酸(H2CPIA)和2,2′-联吡啶(2,2′-bipy)为原料,在水热条件下可方便地合成一种新型Ln-MOF [Eu2(CPIA)3(2,2′-bipy)(H2O)3]∙2H2O (Eu-MOF)。CPIA配体的2,2 ' -bipy和不配位吡啶环占据了两种通道,具有三维多孔框架。水稳定性和热稳定性测试表明,在水中浸泡20天,加热至150℃后,eum - mof的发光强度分别保持在初始发光强度的95.50%和80.05%。这些物理化学稳定性使其成为Fe3+离子检测/识别和固态照明的理想候选材料。
{"title":"Water and thermal stability Eu-MOF for highly selectively sensing Fe3+ ions and phosphor-converted LED","authors":"Jing Li ,&nbsp;Xiao-Liang Yang ,&nbsp;Jia-Chen Liu ,&nbsp;Xin-Ci Wu ,&nbsp;Xiao-Tian Wei ,&nbsp;Ya-Pan Wu ,&nbsp;Xiao-Gang Yang","doi":"10.1016/j.molstruc.2026.145596","DOIUrl":"10.1016/j.molstruc.2026.145596","url":null,"abstract":"<div><div>Lanthanide metal–organic frameworks (Ln-MOFs) are widely recognized as excellent photo-functional materials, primarily owing to their bright emission, long luminescence lifetime, narrow and line-like emission. However, the urgent issues of water stability and thermal quenching still pose formidable challenges. Herein, one novel Ln-MOF [Eu2(CPIA)3(2,2′-bipy)(H2O)3]∙2H2O (<strong>Eu-MOF</strong>) can be facilely synthesized by the mixture of Eu2O3, (3-(3-carboxyphenyl) isonicotinic acid (H2CPIA) and 2,2′-bipyridine (2,2′-bipy) under hydrothermal conditions. It has a 3D porous framework with two kinds of channels being occupied by the 2,2′-bipy and uncoordinated pyridine rings of CPIA ligands. The water and thermal stability measurements exhibit that the <strong>Eu-MOF</strong> can maintain 95.50% and 80.05% of its initial luminescent intensity after remaining socked in water for 20 days and being heated to 150 °C, respectively. These physicochemical stability ensure it ideal candidate applied in the detection/recognition of Fe3+ ions, and solid-state lighting.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145596"},"PeriodicalIF":4.7,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192475","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structural, and computational insights of 2,3-dihydropyrazine derivatives as antitubercular agents 2,3-二氢吡嗪衍生物作为抗结核药物的结构和计算见解
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-05 DOI: 10.1016/j.molstruc.2026.145594
R. Reshwen Shalo , A.R. Karthiga , S. Divyabharathi , K. Rajeswari , T. Vidhyasagar
Tuberculosis (TB) remains a major global health challenge, even with the presence of effective treatment options. The increasing demand for more efficient anti-tubercular drugs highlights the need for improved strategies in combating this disease. The present study focuses on developing effective anti-tubercular agents through the synthesis and characterization of two dihydropyrazine derivatives: 2-(4-fluorophenyl)-3-methyl-5,6-diphenyl-2,3-dihydropyrazine (4a) and 2-phenyl-3-isopropyl-5,6-diphenyl-2,3-dihydropyrazine (4b). These compounds were analysed using spectral techniques and single-crystal X-ray diffraction (SC-XRD), and their potential anti-tubercular activity was evaluated through molecular docking studies. Single-crystal X-ray diffraction analysis reveals that the pyrazine rings in molecules 4a and 4b adopt a screw-boat conformation. Crystallographic investigations revealed that crystal packing in 4a is primarily stabilized by CH···π interactions, while 4b exhibits CH···HC, and CH···π interactions. Density Functional Theory (DFT) calculations at the B3LYP/6–311++ G(d, p) level was employed to evaluate molecular geometry, Frontier Molecular Orbitals (FMOs), Molecular Electrostatic Potential (MEP), and Global Chemical Reactivity parameters. The MEP maps provided insight into the reactive sites. The optimized geometrical parameters showed good agreement with the SC-XRD results. Hirshfeld surface analysis and 2D fingerprint plots, revealed that non-covalent interactions play a crucial role in stabilizing the crystal packing, with significant contributions from H···H contacts in 4a (56.7%) and in 4b (68.1%). The energy framework analysis provided additional evidence highlighting the crucial role of these interactions in retaining crystal stability. Molecular docking studies targeting the Cytochrome P450 protein (PDB ID: 1EA1) revealed strong antitubercular potential, exhibiting favourable binding affinities. In silico ADME predictions indicated that both compounds possess excellent pharmacokinetic properties. These findings provide valuable insights into the potential of these compounds to be developed as effective bioactive agents.
即使存在有效的治疗方案,结核病仍然是一项重大的全球卫生挑战。对更有效的抗结核药物的需求日益增加,这突出表明需要改进防治这一疾病的战略。本研究的重点是通过合成和表征2-(4-氟苯基)-3-甲基-5,6-二苯基-2,3-二氢吡嗪(4a)和2-苯基-3-异丙基-5,6-二苯基-2,3-二氢吡嗪(4b)两种二氢吡嗪衍生物来开发有效的抗结核药物。利用光谱技术和单晶x射线衍射(SC-XRD)分析了这些化合物,并通过分子对接研究评估了它们的潜在抗结核活性。单晶x射线衍射分析表明,分子4a和4b中的吡嗪环呈螺旋船状构象。晶体学研究表明,4a中的晶体堆积主要由CH··π相互作用稳定,而4b中的晶体堆积主要由CH··HC和CH··π相互作用稳定。采用B3LYP/ 6-311 ++ G(d, p)水平的密度泛函理论(DFT)计算来评估分子几何结构、前沿分子轨道(FMOs)、分子静电势(MEP)和整体化学反应性参数。MEP地图提供了对活性位点的深入了解。优化后的几何参数与SC-XRD结果吻合较好。Hirshfeld表面分析和二维指纹图谱显示,非共价相互作用在稳定晶体堆积中起着至关重要的作用,其中H···H接触在4a(56.7%)和4b(68.1%)中起着重要作用。能量框架分析提供了额外的证据,强调了这些相互作用在保持晶体稳定性方面的关键作用。靶向细胞色素P450蛋白(PDB ID: 1EA1)的分子对接研究显示出强大的抗结核潜力,表现出良好的结合亲和力。在计算机ADME预测表明,这两种化合物具有良好的药代动力学性质。这些发现为开发这些化合物作为有效生物活性剂的潜力提供了有价值的见解。
{"title":"Structural, and computational insights of 2,3-dihydropyrazine derivatives as antitubercular agents","authors":"R. Reshwen Shalo ,&nbsp;A.R. Karthiga ,&nbsp;S. Divyabharathi ,&nbsp;K. Rajeswari ,&nbsp;T. Vidhyasagar","doi":"10.1016/j.molstruc.2026.145594","DOIUrl":"10.1016/j.molstruc.2026.145594","url":null,"abstract":"<div><div>Tuberculosis (TB) remains a major global health challenge, even with the presence of effective treatment options. The increasing demand for more efficient anti-tubercular drugs highlights the need for improved strategies in combating this disease. The present study focuses on developing effective anti-tubercular agents through the synthesis and characterization of two dihydropyrazine derivatives: 2-(4-fluorophenyl)-3-methyl-5,6-diphenyl-2,3-dihydropyrazine (<strong>4a</strong>) and 2-phenyl-3-isopropyl-5,6-diphenyl-2,3-dihydropyrazine (<strong>4b</strong>). These compounds were analysed using spectral techniques and single-crystal X-ray diffraction (SC-XRD), and their potential anti-tubercular activity was evaluated through molecular docking studies. Single-crystal X-ray diffraction analysis reveals that the pyrazine rings in molecules <strong>4a</strong> and <strong>4b</strong> adopt a screw-boat conformation. Crystallographic investigations revealed that crystal packing in <strong>4a</strong> is primarily stabilized by C<img>H···π interactions, while <strong>4b</strong> exhibits C<img>H···H<img>C, and C<img>H···π interactions. Density Functional Theory (DFT) calculations at the B3LYP/6–311++ <em>G</em>(d, p) level was employed to evaluate molecular geometry, Frontier Molecular Orbitals (FMOs), Molecular Electrostatic Potential (MEP), and Global Chemical Reactivity parameters. The MEP maps provided insight into the reactive sites. The optimized geometrical parameters showed good agreement with the SC-XRD results. Hirshfeld surface analysis and 2D fingerprint plots, revealed that non-covalent interactions play a crucial role in stabilizing the crystal packing, with significant contributions from H<strong>···</strong>H contacts in <strong>4a (</strong>56.7%) and in <strong>4b (</strong>68.1%). The energy framework analysis provided additional evidence highlighting the crucial role of these interactions in retaining crystal stability. Molecular docking studies targeting the Cytochrome P450 protein (PDB ID: <span><span>1EA1</span><svg><path></path></svg></span>) revealed strong antitubercular potential, exhibiting favourable binding affinities. <em>In silico</em> ADME predictions indicated that both compounds possess excellent pharmacokinetic properties<em>.</em> These findings provide valuable insights into the potential of these compounds to be developed as effective bioactive agents.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145594"},"PeriodicalIF":4.7,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A review of 9, 9-Dimethyl-9, 10-dihydroacridine (DMAC) derivatives as thermally activated delayed fluorescence emitters in OLED applications 9,9 -二甲基- 9,10 -二氢吖啶(DMAC)衍生物热激活延迟荧光发射体在OLED中的应用综述
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-05 DOI: 10.1016/j.molstruc.2026.145590
Masoud Dehghanipour , Zahra Nasresfahani
Thermally Activated Delayed Fluorescence (TADF) has emerged as a game changer in the field of organic light-emitting diodes (OLEDs). By cleverly harnessing both singlet and triplet excitons, TADF offers a compelling pathway to achieve high internal quantum efficiencies (IQEs) without relying on expensive and often problematic rare-earth metals used in phosphorescent materials. This review focuses on TADF emitters utilizing at least one 9,9-Dimethyl-9,10-dihydroacridine (DMAC) unit as a donor and is structured according to different acceptor building blocks, including, triazines, pyrimidines, sulfones, carbonyls, anthraquinones, pyridines, borons, and others, along with material design strategies, device performance, and future prospects. The incorporation of acridine derivatives into OLED materials can enhance the efficiency and stability of light emission, making them promising candidates for next-generation display technologies. The distinctive planar structure of acridine allows for effective π-π stacking, facilitating charge transport and exciton formation in the organic layers. Furthermore, acridine's ability to emit light in a wide range of colors (red, green, blue, and white) is particularly valuable. Herein, the recent developments of DMAC derivatives is methodically summarized, that structure–property relationships focused on two fundamental factors of interest for TADF emitters, including, frontier molecular orbitals separation and minimal singlet–triplet energy gap (ΔEST) and OLED applications. It is anticipated that this review will provide a comprehensive overview of the role of this acridine analog in advancing OLED materials and present exciting possibilities for both scientific research and commercial applications.
热激活延迟荧光(TADF)已成为有机发光二极管(oled)领域的游戏规则改变者。通过巧妙地利用单重态和三重态激子,TADF为实现高内部量子效率(iqi)提供了一条引人注目的途径,而无需依赖磷光材料中使用的昂贵且经常存在问题的稀土金属。本文综述了至少使用一个9,9-二甲基-9,10-二氢吖啶(DMAC)单元作为供体的TADF发射器,并根据不同的受体构建块进行结构,包括三嗪类、嘧啶类、砜类、羰基类、蒽醌类、吡啶类、硼类等,以及材料设计策略、设备性能和未来前景。在OLED材料中加入吖啶衍生物可以提高发光效率和稳定性,使其成为下一代显示技术的有希望的候选者。吖啶独特的平面结构允许有效的π-π堆叠,促进有机层中的电荷传输和激子形成。此外,吖啶能发出各种颜色的光(红、绿、蓝、白),这一点特别有价值。本文系统地总结了DMAC衍生物的最新发展,其结构-性质关系主要集中在TADF发射器的两个基本因素上,包括前沿分子轨道分离和最小单重态-三重态能隙(ΔEST)和OLED应用。预计这篇综述将全面概述这种吖啶类似物在推进OLED材料中的作用,并为科学研究和商业应用提供令人兴奋的可能性。
{"title":"A review of 9, 9-Dimethyl-9, 10-dihydroacridine (DMAC) derivatives as thermally activated delayed fluorescence emitters in OLED applications","authors":"Masoud Dehghanipour ,&nbsp;Zahra Nasresfahani","doi":"10.1016/j.molstruc.2026.145590","DOIUrl":"10.1016/j.molstruc.2026.145590","url":null,"abstract":"<div><div>Thermally Activated Delayed Fluorescence (TADF) has emerged as a game changer in the field of organic light-emitting diodes (OLEDs). By cleverly harnessing both singlet and triplet excitons, TADF offers a compelling pathway to achieve high internal quantum efficiencies (IQEs) without relying on expensive and often problematic rare-earth metals used in phosphorescent materials. This review focuses on TADF emitters utilizing at least one 9,9-Dimethyl-9,10-dihydroacridine (DMAC) unit as a donor and is structured according to different acceptor building blocks, including, triazines, pyrimidines, sulfones, carbonyls, anthraquinones, pyridines, borons, and others, along with material design strategies, device performance, and future prospects. The incorporation of acridine derivatives into OLED materials can enhance the efficiency and stability of light emission, making them promising candidates for next-generation display technologies. The distinctive planar structure of acridine allows for effective π-π stacking, facilitating charge transport and exciton formation in the organic layers. Furthermore, acridine's ability to emit light in a wide range of colors (red, green, blue, and white) is particularly valuable. Herein, the recent developments of DMAC derivatives is methodically summarized, that structure–property relationships focused on two fundamental factors of interest for TADF emitters, including, frontier molecular orbitals separation and minimal singlet–triplet energy gap (ΔE<sub>ST</sub>) and OLED applications. It is anticipated that this review will provide a comprehensive overview of the role of this acridine analog in advancing OLED materials and present exciting possibilities for both scientific research and commercial applications.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145590"},"PeriodicalIF":4.7,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Syntheses, characterization, computational studies, DNA/protein binding, and assessment of antimicrobial potency of new Zinc(II) dithiocarbamates 新型二硫代氨基甲酸锌的合成、表征、计算研究、DNA/蛋白质结合和抗菌效能评估
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-05 DOI: 10.1016/j.molstruc.2026.145591
Shafeeq Ur Rehman , Ziaur Rehman , Faisal Hayat , Atif khalil , Muhammad Arslan Zaheen , Usman Ali , Naifa Alenazi , Hanan Alghibiwi
The promising biocompatibility of Zn(II) dithiocarbamates prompted us to synthesize three new compounds of this class: bis[4-(2-methoxyphenyl)piperazine-1-carbodithioato-k2 S,S']zinc(II) (1), bis[4-(2-hydroxyoxyphenyl)piperazine-1-carbodithioato-k2 S,S']zinc(II) (2), and bis(benzylmethyl-1-carbodithioato-k2 S,S']zinc(II) (3). To elucidate the structures of these compounds, a variety of characterization techniques were employed, namely elemental analysis, UV-visible spectroscopy, FTIR, and both 1H NMR and 13C NMR spectroscopy. Furthermore, the assessment of geometry and stability was carried out using DFT-based calculations. Molecular docking with CT-DNA, Vascular Endothelial Growth Factor Receptor (VEGFR2) and Epidermal Growth Factor Receptor (EGFR) have indicated their strong and specific interactions, underpinning their potential as anticancer agents. Multiple complementary assays, including UV-visible spectroscopy, cyclic voltammetry, and viscometry, have confirmed their high DNA-binding capability operating through distinct binding modes. The determination of key thermodynamic and kinetic parameters further validated their biological potential and also indicated the spontaneous nature of drug-DNA interaction. Additionally, complexes 1-3 exhibited excellent potential as antioxidant and antimicrobial (antibacterial and antifungal) agents. In nutshell, the biocompatible and the bioactive nature of Zn(II) dithiocarbamates (1-3) necessitates for further exploration in the domain of anticancer and antimicrobial research to gain in-depth understanding of their mechanism of action and challenges associated with their use.
由于锌(II)二硫代氨基甲酸酯具有良好的生物相容性,我们合成了三个新的该类化合物:双[4-(2-甲氧基苯基)哌嗪-1-碳二硫代氨基-k2 S,S']锌(II)(1)、双[4-(2-羟基氧基苯基)哌嗪-1-碳二硫代氨基-k2 S,S']锌(II)(2)和双(苄基甲基-1-碳二硫代氨基-k2 S,S']锌(II)(3)。为了阐明这些化合物的结构,采用了多种表征技术,即元素分析、紫外可见光谱、FTIR以及1H NMR和13C NMR。此外,使用基于dft的计算进行了几何和稳定性评估。与CT-DNA、血管内皮生长因子受体(VEGFR2)和表皮生长因子受体(EGFR)的分子对接表明,它们具有强而特异性的相互作用,支持它们作为抗癌药物的潜力。包括紫外可见光谱法、循环伏安法和粘度法在内的多种互补分析证实了它们通过不同的结合模式具有很高的dna结合能力。关键热力学和动力学参数的测定进一步验证了它们的生物学潜力,也表明了药物- dna相互作用的自发性。此外,配合物1-3表现出作为抗氧化和抗真菌(抗菌和抗真菌)剂的优异潜力。简而言之,锌(II)二硫代氨基甲酸酯(1-3)的生物相容性和生物活性需要在抗癌和抗菌研究领域进一步探索,以深入了解其作用机制和使用相关的挑战。
{"title":"Syntheses, characterization, computational studies, DNA/protein binding, and assessment of antimicrobial potency of new Zinc(II) dithiocarbamates","authors":"Shafeeq Ur Rehman ,&nbsp;Ziaur Rehman ,&nbsp;Faisal Hayat ,&nbsp;Atif khalil ,&nbsp;Muhammad Arslan Zaheen ,&nbsp;Usman Ali ,&nbsp;Naifa Alenazi ,&nbsp;Hanan Alghibiwi","doi":"10.1016/j.molstruc.2026.145591","DOIUrl":"10.1016/j.molstruc.2026.145591","url":null,"abstract":"<div><div>The promising biocompatibility of Zn(II) dithiocarbamates prompted us to synthesize three new compounds of this class: bis[4-(2-methoxyphenyl)piperazine-1-carbodithioato-<em>k</em><sup>2</sup> S,S']zinc(II) (<strong>1)</strong>, bis[4-(2-hydroxyoxyphenyl)piperazine-1-carbodithioato-<em>k</em><sup>2</sup> S,S']zinc(II) <strong>(2)</strong>, and bis(benzylmethyl-1-carbodithioato-<em>k</em><sup>2</sup> S,S']zinc(II) <strong>(3)</strong>. To elucidate the structures of these compounds, a variety of characterization techniques were employed, namely elemental analysis, UV-visible spectroscopy, FTIR, and both <sup>1</sup>H NMR and <sup>13</sup>C NMR spectroscopy. Furthermore, the assessment of geometry and stability was carried out using DFT-based calculations. Molecular docking with CT-DNA, Vascular Endothelial Growth Factor Receptor (VEGFR2) and Epidermal Growth Factor Receptor (EGFR) have indicated their strong and specific interactions, underpinning their potential as anticancer agents. Multiple complementary assays, including UV-visible spectroscopy, cyclic voltammetry, and viscometry, have confirmed their high DNA-binding capability operating through distinct binding modes. The determination of key thermodynamic and kinetic parameters further validated their biological potential and also indicated the spontaneous nature of drug-DNA interaction. Additionally, complexes <strong>1-3</strong> exhibited excellent potential as antioxidant and antimicrobial (antibacterial and antifungal) agents. In nutshell, the biocompatible and the bioactive nature of Zn(II) dithiocarbamates (<strong>1-3</strong>) necessitates for further exploration in the domain of anticancer and antimicrobial research to gain in-depth understanding of their mechanism of action and challenges associated with their use.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145591"},"PeriodicalIF":4.7,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Methyl group dynamics and conformational flexibility in methacetin revealed by neutron spectroscopy 中子谱分析甲基西丁的甲基动力学和构象柔韧性
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-05 DOI: 10.1016/j.molstruc.2026.145589
Jose E.M. Pereira , Elena Boldyreva , Boris A. Zakharov , Hery Mitsutake , Svemir Rudić , Michael M. Koza , Tilo Seydel , Juergen Eckert , Heloisa N. Bordallo
The dynamics of functional groups within drug molecules influences their medicinal or toxicological effects, with methyl groups’ conformational changes affecting binding to active sites. Here, we combine inelastic neutron spectroscopy with density functional theory to investigate molecular dynamics and conformational flexibility of methacetin (C9H11NO2), a member of the acetamide family that includes paracetamol (C8H9NO2) and phenacetin (C10H13NO2). Our results reveal that subtle variations in its crystal packing and hydrogen bonding lead to multiple conformations, with methyl group reorientations contributing significantly to the molecules dynamics. This study stresses the importance of integrating experimental and computational methods to understand the structural dynamics of pharmaceutical compounds and their implications for drug design.
药物分子内官能团的动态变化影响其药物或毒理学作用,甲基的构象变化影响其与活性位点的结合。本文采用非弹性中子能谱与密度泛函理论相结合的方法,研究了甲西丁(C9H11NO2)的分子动力学和构象柔韧性。甲西丁是乙酰胺家族的一员,包括扑热息痛(C8H9NO2)和非西丁(C10H13NO2)。我们的研究结果表明,其晶体排列和氢键的细微变化导致了多种构象,甲基取向对分子动力学有重要影响。本研究强调了整合实验和计算方法来理解药物化合物的结构动力学及其对药物设计的影响的重要性。
{"title":"Methyl group dynamics and conformational flexibility in methacetin revealed by neutron spectroscopy","authors":"Jose E.M. Pereira ,&nbsp;Elena Boldyreva ,&nbsp;Boris A. Zakharov ,&nbsp;Hery Mitsutake ,&nbsp;Svemir Rudić ,&nbsp;Michael M. Koza ,&nbsp;Tilo Seydel ,&nbsp;Juergen Eckert ,&nbsp;Heloisa N. Bordallo","doi":"10.1016/j.molstruc.2026.145589","DOIUrl":"10.1016/j.molstruc.2026.145589","url":null,"abstract":"<div><div>The dynamics of functional groups within drug molecules influences their medicinal or toxicological effects, with methyl groups’ conformational changes affecting binding to active sites. Here, we combine inelastic neutron spectroscopy with density functional theory to investigate molecular dynamics and conformational flexibility of methacetin (C<sub>9</sub>H<sub>11</sub>NO<sub>2</sub>), a member of the acetamide family that includes paracetamol (C<sub>8</sub>H<sub>9</sub>NO<sub>2</sub>) and phenacetin (C<sub>10</sub>H<sub>13</sub>NO<sub>2</sub>). Our results reveal that subtle variations in its crystal packing and hydrogen bonding lead to multiple conformations, with methyl group reorientations contributing significantly to the molecules dynamics. This study stresses the importance of integrating experimental and computational methods to understand the structural dynamics of pharmaceutical compounds and their implications for drug design.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145589"},"PeriodicalIF":4.7,"publicationDate":"2026-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192404","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Molecular Structure
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1