Pub Date : 2025-12-24DOI: 10.1016/j.molstruc.2025.145148
Hengyu Yang , Botan Li , Wandi Shi , Haibo Zhang , Yiyi Zhang , Lin Sun , Yiquan Zhang , Mingxue Li
We synthesized two DyIII-based mononuclear complexes, [Dy(L)2(C6H5COO)(H2O)]·2H2O (1·2H2O) and [Dy(L)2(CH3COO)(H2O)]·3H2O (2·3H2O), using a Schiff base ligand (HL=N'-(2-hydroxybenzoyl)pyrazine-2-carbohydrazonamide) that feature multiple chelating sites. Single-crystal X-ray diffraction analysis indicates that complexes 1·2H2O and 2·3H2O both crystallize in the space group. The DyIII ions in the two complexes both possess an N4O5 coordination sphere. In contrast to the spherical tricapped trigonal prism geometry of the DyIII ion in 1·2H2O, the DyIII center in 2·3H2O adopts a muffin-shaped configuration. This primarily can be attributed to the use of different carboxylates in synthesis. Magnetic studies demonstrate that intermolecular antiferromagnetic interactions are present in both 1·2H2O and 2·3H2O. Pronounced quantum tunneling of magnetization (QTM) suppresses slow magnetic relaxation behavior in 1·2H2O, while 2·3H2O displays field-induced single-molecule magnet (SMM) characteristics. Theoretical calculations suggest 2·3H2O exhibits strong axial magnetic anisotropy, in agreement with experimental results. Magneto-structural correlations analysis reveals that replacing the benzoate ion with acetate ion alters the coordination geometry of the DyIII ion, which in turn leads to shorter axial Dy-O bonds and a corresponding enhancement in SMM performance. This work presents a viable strategy to modulate the performance of SMM. This strategy hinges on the rational selection of metal salts (electron-withdrawing or electron-donating anions) to induce a transformation in the coordination geometry of the DyIII ion, ultimately tuning the magnetic properties.
{"title":"Carboxylate-modulated structural variations and slow magnetic relaxation in mononuclear dysprosium(III) complexes","authors":"Hengyu Yang , Botan Li , Wandi Shi , Haibo Zhang , Yiyi Zhang , Lin Sun , Yiquan Zhang , Mingxue Li","doi":"10.1016/j.molstruc.2025.145148","DOIUrl":"10.1016/j.molstruc.2025.145148","url":null,"abstract":"<div><div>We synthesized two Dy<sup>III</sup>-based mononuclear complexes, [Dy(L)<sub>2</sub>(C<sub>6</sub>H<sub>5</sub>COO)(H<sub>2</sub>O)]·2H<sub>2</sub>O (1·2H<sub>2</sub>O) and [Dy(L)<sub>2</sub>(CH<sub>3</sub>COO)(H<sub>2</sub>O)]·3H<sub>2</sub>O (2·3H<sub>2</sub>O), using a Schiff base ligand (HL=N'-(2-hydroxybenzoyl)pyrazine-2-carbohydrazonamide) that feature multiple chelating sites. Single-crystal X-ray diffraction analysis indicates that complexes 1·2H<sub>2</sub>O and 2·3H<sub>2</sub>O both crystallize in the <span><math><mrow><mi>P</mi><mover><mn>1</mn><mo>¯</mo></mover></mrow></math></span> space group. The Dy<sup>III</sup> ions in the two complexes both possess an N<sub>4</sub>O<sub>5</sub> coordination sphere. In contrast to the spherical tricapped trigonal prism geometry of the Dy<sup>III</sup> ion in 1·2H<sub>2</sub>O, the Dy<sup>III</sup> center in 2·3H<sub>2</sub>O adopts a muffin-shaped configuration. This primarily can be attributed to the use of different carboxylates in synthesis. Magnetic studies demonstrate that intermolecular antiferromagnetic interactions are present in both 1·2H<sub>2</sub>O and 2·3H<sub>2</sub>O. Pronounced quantum tunneling of magnetization (QTM) suppresses slow magnetic relaxation behavior in 1·2H<sub>2</sub>O, while 2·3H<sub>2</sub>O displays field-induced single-molecule magnet (SMM) characteristics. Theoretical calculations suggest 2·3H<sub>2</sub>O exhibits strong axial magnetic anisotropy, in agreement with experimental results. Magneto-structural correlations analysis reveals that replacing the benzoate ion with acetate ion alters the coordination geometry of the Dy<sup>III</sup> ion, which in turn leads to shorter axial Dy-O bonds and a corresponding enhancement in SMM performance. This work presents a viable strategy to modulate the performance of SMM. This strategy hinges on the rational selection of metal salts (electron-withdrawing or electron-donating anions) to induce a transformation in the coordination geometry of the Dy<sup>III</sup> ion, ultimately tuning the magnetic properties.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145148"},"PeriodicalIF":4.7,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145838683","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In this study, a series of new Zn(II) carboxylate complexes were successfully synthesized and characterized using various spectroscopic techniques and single-crystal X-ray diffraction (SC-XRD) analysis. The UV–Vis spectra revealed both ligand-to-metal charge transfer (LMCT) bands and characteristic π–π* transitions of the aromatic moieties, while FTIR data confirmed the structural integrity and coordination behavior of the ligands upon complexation. The 1H/13C NMR spectra further supported coordination, exhibiting notable chemical shift variations relative to the free ligands. The crystal structure of complex C2, determined by SC-XRD, validated the proposed coordination geometry around the Zn(II) center. All the synthesized complexes showed moderate to significant antimicrobial activity, with C2 exhibiting the highest antifungal potential, likely due to its cyclohexyl moiety. Antibacterial tests revealed greater efficacy against Gram-positive than Gram-negative bacteria. Molecular docking showed that C2 had the strongest binding affinity toward bacterial β-lactamases (PDB: 4HBT, 1MWU), correlating with its higher lipophilicity from ADMET predictions. DFT-D and Monte Carlo simulations provided insights into electronic structure and drug-loading interactions with 2HPβCD. Together, experimental, biological, and computational results highlight the structural features, coordination behavior, and pharmaceutical potential of the synthesized Zn(II) carboxylate complexes.
{"title":"Synthesis, characterization, structural elucidation, and biological evaluation of Zn(II) carboxylate complexes: Supramolecular drug delivery mechanism, and ADMET study","authors":"Amir Karim , Sheeba Shabnam , Najeeb Ullah , Muhammad Iqbal , Rahime Eshaghi Malekshah , Jebiti Haribabu , Sodio C.N. Hsu","doi":"10.1016/j.molstruc.2025.145137","DOIUrl":"10.1016/j.molstruc.2025.145137","url":null,"abstract":"<div><div>In this study, a series of new Zn(II) carboxylate complexes were successfully synthesized and characterized using various spectroscopic techniques and single-crystal X-ray diffraction (SC-XRD) analysis. The UV–Vis spectra revealed both ligand-to-metal charge transfer (LMCT) bands and characteristic π–π* transitions of the aromatic moieties, while FTIR data confirmed the structural integrity and coordination behavior of the ligands upon complexation. The <sup>1</sup>H/<sup>13</sup>C NMR spectra further supported coordination, exhibiting notable chemical shift variations relative to the free ligands. The crystal structure of complex <strong>C2</strong>, determined by SC-XRD, validated the proposed coordination geometry around the Zn(II) center. All the synthesized complexes showed moderate to significant antimicrobial activity, with <strong>C2</strong> exhibiting the highest antifungal potential, likely due to its cyclohexyl moiety. Antibacterial tests revealed greater efficacy against Gram-positive than Gram-negative bacteria. Molecular docking showed that <strong>C2</strong> had the strongest binding affinity toward bacterial β-lactamases (PDB: <span><span>4HBT</span><svg><path></path></svg></span>, <span><span>1MWU</span><svg><path></path></svg></span>), correlating with its higher lipophilicity from ADMET predictions. DFT-D and Monte Carlo simulations provided insights into electronic structure and drug-loading interactions with 2HPβCD. Together, experimental, biological, and computational results highlight the structural features, coordination behavior, and pharmaceutical potential of the synthesized Zn(II) carboxylate complexes.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145137"},"PeriodicalIF":4.7,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145881657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-24DOI: 10.1016/j.molstruc.2025.145152
Hayfa H. Almutairi , Jihan Qurban , Nadiyah M. Alshammari , Hossa F. Alshareef , Mohammed S. Alshammari , Maryam M. Alnoman , Hanadi A. Katouah , Nashwa M. El-Metwaly
A new series of pyrazole-based enaminonitrile derivatives was synthesized through cyclization of a crucial intermediate and characterized by IR, NMR, elemental analysis, and MS. The antibacterial activity of the compounds against Candida albicans, Escherichia coli, and Staphylococcus aureus was assessed. Among these, compounds 14, 15, and particularly 19 displayed significant broad-spectrum action, obtaining MIC values as low as 3.125 µg/mL comparable to or exceeding chloramphenicol and cycloheximide. Analysis of the structure–activity relationship showed that fused heterocyclic systems and electron-withdrawing substituents greatly increased potency. Molecular docking (PDB: 3FV5) supported these findings, showing strong and stable binding, with compound 19 displaying the highest affinity (–7.74 kcal/mol). These results suggest compound 19 as a viable lead for further antibacterial modification and development. Moreover, in silico ADME profiling utilizing the SwissADME tool on the synthesized compounds to find their pharmacokinetic profile. While some of the synthesized derivatives showed decreased permeability or increased molecular complexity that resulted in decreased solubility, the majority of them demonstrated strong GI absorption and water solubility. CYP inhibition was variable, with exact substances indicating potential inhibitory efficacy against CYP2C9, CYP2C19, and CYP3A4.
{"title":"Unveiling broad-spectrum antimicrobial potential of novel pyrazole-embedded enaminonitrile derivatives: Insights from synthesis, SAR, and molecular docking studies","authors":"Hayfa H. Almutairi , Jihan Qurban , Nadiyah M. Alshammari , Hossa F. Alshareef , Mohammed S. Alshammari , Maryam M. Alnoman , Hanadi A. Katouah , Nashwa M. El-Metwaly","doi":"10.1016/j.molstruc.2025.145152","DOIUrl":"10.1016/j.molstruc.2025.145152","url":null,"abstract":"<div><div>A new series of pyrazole-based enaminonitrile derivatives was synthesized through cyclization of a crucial intermediate and characterized by IR, NMR, elemental analysis, and MS. The antibacterial activity of the compounds against <em>Candida albicans, Escherichia coli</em>, and <em>Staphylococcus aureus</em> was assessed. Among these, compounds <strong>14, 15</strong>, and particularly <strong>19</strong> displayed significant broad-spectrum action, obtaining MIC values as low as 3.125 µg/mL comparable to or exceeding chloramphenicol and cycloheximide. Analysis of the structure–activity relationship showed that fused heterocyclic systems and electron-withdrawing substituents greatly increased potency. Molecular docking (PDB: 3FV5) supported these findings, showing strong and stable binding, with compound <strong>19</strong> displaying the highest affinity (–7.74 kcal/mol). These results suggest compound <strong>19</strong> as a viable lead for further antibacterial modification and development. Moreover, in silico ADME profiling utilizing the SwissADME tool on the synthesized compounds to find their pharmacokinetic profile. While some of the synthesized derivatives showed decreased permeability or increased molecular complexity that resulted in decreased solubility, the majority of them demonstrated strong GI absorption and water solubility. CYP inhibition was variable, with exact substances indicating potential inhibitory efficacy against CYP2C9, CYP2C19, and CYP3A4.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145152"},"PeriodicalIF":4.7,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145838667","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-24DOI: 10.1016/j.molstruc.2025.145150
Yousef M. Hijji , Rajeesha Rajan , Haw-Li Su , Amjad Shraim , Said Mansour , Anas Abutaha , Raymond Butcher , Fasil Abebe
Pyrido[1,2-a]pyrazin-5-ium (2-oxide) salts are an interesting class of compounds that contain unique moieties: a bridgehead quaternary nitrogen, an amino group, and an N-oxide functionality. These compounds were efficiently constructed in a one-pot reaction within minutes, yielding good yields. The microwave-assisted reaction of 2-pyridinecarboxaldehyde oxime with bromoacetonitrile yields these unique structures. The compounds were characterized, and their structures confirmed, by single-crystal XRD, NMR, FTIR, and other spectroscopic techniques. 1H-15N HMQC for directly bonded 1H to N clearly shows the presence of an amino group in both compounds. These compounds crystallize in the triclinic p-1 and Cc space groups, revealing the presence of several intermolecular interactions.
{"title":"Microwave-assisted novel synthesis and structural confirmation of Pyrido[1,2-a]pyrazin-5-ium (N-Oxide) Salts","authors":"Yousef M. Hijji , Rajeesha Rajan , Haw-Li Su , Amjad Shraim , Said Mansour , Anas Abutaha , Raymond Butcher , Fasil Abebe","doi":"10.1016/j.molstruc.2025.145150","DOIUrl":"10.1016/j.molstruc.2025.145150","url":null,"abstract":"<div><div>Pyrido[1,2-a]pyrazin-5-ium (2-oxide) salts are an interesting class of compounds that contain unique moieties: a bridgehead quaternary nitrogen, an amino group, and an N-oxide functionality. These compounds were efficiently constructed in a one-pot reaction within minutes, yielding good yields. The microwave-assisted reaction of 2-pyridinecarboxaldehyde oxime with bromoacetonitrile yields these unique structures. The compounds were characterized, and their structures confirmed, by single-crystal XRD, NMR, FTIR, and other spectroscopic techniques. <sup>1</sup>H-<sup>15</sup>N HMQC for directly bonded <sup>1</sup>H to N clearly shows the presence of an amino group in both compounds. These compounds crystallize in the triclinic p-1 and Cc space groups, revealing the presence of several intermolecular interactions.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145150"},"PeriodicalIF":4.7,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145881257","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-24DOI: 10.1016/j.molstruc.2025.145155
Hissah Saedoon Albaqawi , Fekhra Hedhili , Shereen M. Al-Shomar , Nwuyer A. Al-Shammari , Mohamed Gandouzi , Ahmed A. Farag , Khaled M. Abdel-Azim , N.S. Abdelshafi
The effectiveness of phosphaneyl Schiff bases based on structures in preventing corrosion on carbon steel (CSt) in a 1 M HCl solution is investigated and compared in this work using gravimetrical, electrochemical, surface inspection, and computational techniques. The motive of this study is to compare imidazole and pyrrole to assess the conjugation effect of imidazole's extra nitrogen atom, in addition to the diphenylphosphaneyl and imine groups, on corrosion prevention efficiency. Both inhibitors have imidazole and pyrrole better inhibitory efficiency than the majority of equivalent inhibitor types reported in the literature. Imidazol-Sc and Pyrrol-Sc showed the best inhibitory efficiency, 95.0% and 93.4%, at 303 K with a dosage of 0.001 M. They also maintained excellent results, 83.5% and 71.3%, at 333 K. Imidazole inhibitor is more efficient than pyrrole because one of its two N atoms has an accessible lone pair that is not involved in aromaticity, which allows for σ-donation and protonation. While the lone pair of N atom in pyrrole is part of the aromatic π-system, which limits its interaction with the CSt surface. Imidazol-Sc and Pyrrol-Sc both showed mixed inhibitory action when adsorbed over the CSt surface via a blend adsorption mechanism that adheres to the Langmuir isotherm. Investigations employing AFM, contact angle, and XRD measurements have indicated that the inhibitors have generated a protective layer that is responsible for the corrosion prevention observed at the CSt substrate. Computational molecular modelling (DFT, Fukui, and molecular dynamic simulation) studies supported the experimental results. Therefore, industrial acidic environments may find application for the inhibitors under study.
{"title":"Comparing the inhibitory effects of phosphaneyl derivatives based on pyrrole and imidazole on C-steel in an acidic setting: Theoretical, surface morphological and experimental methodologies","authors":"Hissah Saedoon Albaqawi , Fekhra Hedhili , Shereen M. Al-Shomar , Nwuyer A. Al-Shammari , Mohamed Gandouzi , Ahmed A. Farag , Khaled M. Abdel-Azim , N.S. Abdelshafi","doi":"10.1016/j.molstruc.2025.145155","DOIUrl":"10.1016/j.molstruc.2025.145155","url":null,"abstract":"<div><div>The effectiveness of phosphaneyl Schiff bases based on structures in preventing corrosion on carbon steel (<em>CSt</em>) in a 1 M HCl solution is investigated and compared in this work using gravimetrical, electrochemical, surface inspection, and computational techniques. The motive of this study is to compare imidazole and pyrrole to assess the conjugation effect of imidazole's extra nitrogen atom, in addition to the diphenylphosphaneyl and imine groups, on corrosion prevention efficiency. Both inhibitors have imidazole and pyrrole better inhibitory efficiency than the majority of equivalent inhibitor types reported in the literature. <em>Imidazol-Sc</em> and <em>Pyrrol-Sc</em> showed the best inhibitory efficiency, 95.0% and 93.4%, at 303 K with a dosage of 0.001 M. They also maintained excellent results, 83.5% and 71.3%, at 333 K. Imidazole inhibitor is more efficient than pyrrole because one of its two N atoms has an accessible lone pair that is not involved in aromaticity, which allows for σ-donation and protonation. While the lone pair of N atom in pyrrole is part of the aromatic π-system, which limits its interaction with the <em>CSt</em> surface. <em>Imidazol-Sc</em> and <em>Pyrrol-Sc</em> both showed mixed inhibitory action when adsorbed over the <em>CSt</em> surface via a blend adsorption mechanism that adheres to the Langmuir isotherm. Investigations employing AFM, contact angle, and XRD measurements have indicated that the inhibitors have generated a protective layer that is responsible for the corrosion prevention observed at the <em>CSt</em> substrate. Computational molecular modelling (DFT, Fukui, and molecular dynamic simulation) studies supported the experimental results. Therefore, industrial acidic environments may find application for the inhibitors under study.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145155"},"PeriodicalIF":4.7,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145882107","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-24DOI: 10.1016/j.molstruc.2025.145154
Xiangcheng Wang , Xiong Wang , Lingwei Zeng , Mengjia Chen , Hu Zhou , Jianxian Zeng , Guoqing Liu , Tao Pang , Zhouxi Li , Shijie Zhang , Jianfeng Tang , Daqin Chen
It is well-known that upconversion nanocrystals usually have a low efficiency. Over the past years, much attention has been paid to fluorides, and less is focused on lanthanide orthovanadates. Herein, we intend to adopt the impurity doping strategy to enhance upconversion luminescence (UCL). In this work, the size and UCL (Er3+:4S3/2, 4F9/2→4I15/2 transitions) property of tetragonal host LaVO4:Yb3+/Er3+ are regulated by varying the ZrOCl2 concentration. It is found that the sizes decrease along with the ZrOCl2 addition. Interestingly, this result is quite different from previous investigation, where the introduction of higher-valance cations facilitates crystal growth and lower-valance cations reduces the grain size. By optimizing the ZrOCl2 content to 7.5 mol%, the UCL intensities (green and red emissions) are enhanced considerably. Furthermore, the mechanisms for size reduction and UCL augment are analyzed detailedly. It provides a promising way for UCL improvement and enriches the approach to growth mechanism in solution particularly induced by surface modification.
{"title":"Abnormal size reduction and enhancement in upconversion emission of tetragonal LaVO4:Yb3+/Er3+ nanocrystals by surface modification with ZrOCl2","authors":"Xiangcheng Wang , Xiong Wang , Lingwei Zeng , Mengjia Chen , Hu Zhou , Jianxian Zeng , Guoqing Liu , Tao Pang , Zhouxi Li , Shijie Zhang , Jianfeng Tang , Daqin Chen","doi":"10.1016/j.molstruc.2025.145154","DOIUrl":"10.1016/j.molstruc.2025.145154","url":null,"abstract":"<div><div>It is well-known that upconversion nanocrystals usually have a low efficiency. Over the past years, much attention has been paid to fluorides, and less is focused on lanthanide orthovanadates. Herein, we intend to adopt the impurity doping strategy to enhance upconversion luminescence (UCL). In this work, the size and UCL (Er<sup>3+</sup>:<sup>4</sup>S<sub>3/2</sub>, <sup>4</sup>F<sub>9/2</sub>→<sup>4</sup>I<sub>15/2</sub> transitions) property of tetragonal host LaVO<sub>4</sub>:Yb<sup>3+</sup>/Er<sup>3+</sup> are regulated by varying the ZrOCl<sub>2</sub> concentration. It is found that the sizes decrease along with the ZrOCl<sub>2</sub> addition. Interestingly, this result is quite different from previous investigation, where the introduction of higher-valance cations facilitates crystal growth and lower-valance cations reduces the grain size. By optimizing the ZrOCl<sub>2</sub> content to 7.5 mol%, the UCL intensities (green and red emissions) are enhanced considerably. Furthermore, the mechanisms for size reduction and UCL augment are analyzed detailedly. It provides a promising way for UCL improvement and enriches the approach to growth mechanism in solution particularly induced by surface modification.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145154"},"PeriodicalIF":4.7,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145881655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-23DOI: 10.1016/j.molstruc.2025.145142
Zheng Tang , Qiman Che , Yingying Zhang , Junfei Fan , Shuang Jin , Xiao-Peng Sun , Pengtao Ma , Zi-Shuo Yao , Jingping Wang , Jingyang Niu , Jun Tao
Contrasting coordinated ligands in isostructural compounds provide a powerful strategy for tuning slow magnetic relaxation. Herein, we report two new mononuclear Co(II) compounds, [Co(H2L)Cl2]·0.5H2O (1, H2L = 6, 6’-bis(benzimidazole-2-yl)-2, 2’-bipyridine) and [Co(H2L)(NCS)2] (2), featuring the identical equatorial ligand but differing in axial ligands. Molecular structural analysis revealed the Co(II) center in 1 adopted a hexacoordinate geometry, coordinated by four N atoms from H2L ligand in the equatorial plane and two Cl− anions in the axial positions. In contrast, the axial sites in compound 2 were occupied by two NCS− anions. The varying axial anionic ligands gave rise to an elongated {CoN4Cl2} octahedron in 1 and a compressed {CoN6} octahedron in 2. Alternating-current magnetic susceptibility measurements confirmed that both compounds were field-induced single-ion magnets (SIMs), exhibiting different effective energy barriers. Fitting with the temperature dependence of the relaxation time expression indicated their relaxation dynamics were primarily governed by Orbach, Direct and Raman processes. This work underscores the crucial role of coordinated ligands in design of Co(II)-based SIMs.
{"title":"Impact of coordinated anions on field-induced slow magnetic relaxation in mononuclear Cobalt(II) compounds","authors":"Zheng Tang , Qiman Che , Yingying Zhang , Junfei Fan , Shuang Jin , Xiao-Peng Sun , Pengtao Ma , Zi-Shuo Yao , Jingping Wang , Jingyang Niu , Jun Tao","doi":"10.1016/j.molstruc.2025.145142","DOIUrl":"10.1016/j.molstruc.2025.145142","url":null,"abstract":"<div><div>Contrasting coordinated ligands in isostructural compounds provide a powerful strategy for tuning slow magnetic relaxation. Herein, we report two new mononuclear Co(II) compounds, [Co(H<sub>2</sub>L)Cl<sub>2</sub>]·0.5H<sub>2</sub>O (<strong>1</strong>, H<sub>2</sub>L = 6, 6’-bis(benzimidazole-2-yl)-2, 2’-bipyridine) and [Co(H<sub>2</sub>L)(NCS)<sub>2</sub>] (<strong>2</strong>), featuring the identical equatorial ligand but differing in axial ligands. Molecular structural analysis revealed the Co(II) center in <strong>1</strong> adopted a hexacoordinate geometry, coordinated by four N atoms from H<sub>2</sub>L ligand in the equatorial plane and two Cl<sup>−</sup> anions in the axial positions. In contrast, the axial sites in compound <strong>2</strong> were occupied by two NCS<sup>−</sup> anions. The varying axial anionic ligands gave rise to an elongated {CoN<sub>4</sub>Cl<sub>2</sub>} octahedron in <strong>1</strong> and a compressed {CoN<sub>6</sub>} octahedron in <strong>2</strong>. Alternating-current magnetic susceptibility measurements confirmed that both compounds were field-induced single-ion magnets (SIMs), exhibiting different effective energy barriers. Fitting with the temperature dependence of the relaxation time expression indicated their relaxation dynamics were primarily governed by Orbach, Direct and Raman processes. This work underscores the crucial role of coordinated ligands in design of Co(II)-based SIMs.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145142"},"PeriodicalIF":4.7,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145838614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-23DOI: 10.1016/j.molstruc.2025.145149
Bo Liu, Meng-Qi Tuo, Yu-Jie Xie, Song Zhang, Rui-Zi Xue, Er-Nu Liu, Liu-Xin Zhang, Jiu-Fu Lu
Addressing the global energy crisis and environmental challenges requires the development of efficient, sustainable electrocatalysts for the oxygen evolution reaction (OER). Herein, we report the exfoliation of a one-dimensional Mn(II)-based metal–organic framework, SNUT-39-SC, into nanowires (SNUT-39-NW) via a rapid thermal quenching and ultrasonication strategy. The nanowire structure significantly enhances the electrochemical surface area, promotes charge carrier separation, and improves mass transport, resulting in superior electrocatalytic OER performance. Under simulated solar irradiation, SNUT-39-NW achieves a current density of 10 mA·cm⁻² at an overpotential of only 124 mV in 0.5 M Na₂SO₄, outperforming the bulk crystal (161 mV) and demonstrating excellent stability over 24 h. Mechanistic studies reveal reduced charge transfer resistance and suppressed carrier recombination, highlighting the advantages of nanostructural engineering in optimizing MOF-based electrocatalysts. This work provides valuable insights for the design of high-performance, non-noble metal catalysts for solar-driven water splitting.
解决全球能源危机和环境挑战需要开发高效、可持续的析氧反应电催化剂。在此,我们报道了通过快速热淬火和超声波策略将一维Mn(II)基金属有机骨架SNUT-39-SC剥离成纳米线(SNUT-39-NW)。纳米线结构显著提高了电化学表面积,促进了载流子分离,改善了质量输运,从而获得了优异的电催化OER性能。在模拟太阳辐照下,snut39 - nw在0.5 M Na₂SO₄中过电位仅为124 mV时电流密度达到10 mA·cm⁻²,优于体晶(161 mV),并在24 h内表现出优异的稳定性。机理研究表明,该晶体降低了电荷转移阻力,抑制了载流子重组,突出了纳米结构工程在优化mof基电催化剂方面的优势。这项工作为设计用于太阳能驱动水分解的高性能非贵金属催化剂提供了有价值的见解。
{"title":"Exfoliated Mn-MOF nanowires with enhanced charge separation for high-performance solar-driven oxygen evolution reaction","authors":"Bo Liu, Meng-Qi Tuo, Yu-Jie Xie, Song Zhang, Rui-Zi Xue, Er-Nu Liu, Liu-Xin Zhang, Jiu-Fu Lu","doi":"10.1016/j.molstruc.2025.145149","DOIUrl":"10.1016/j.molstruc.2025.145149","url":null,"abstract":"<div><div>Addressing the global energy crisis and environmental challenges requires the development of efficient, sustainable electrocatalysts for the oxygen evolution reaction (OER). Herein, we report the exfoliation of a one-dimensional Mn(II)-based metal–organic framework, <strong>SNUT-39-SC</strong>, into nanowires (<strong>SNUT-39-NW</strong>) via a rapid thermal quenching and ultrasonication strategy. The nanowire structure significantly enhances the electrochemical surface area, promotes charge carrier separation, and improves mass transport, resulting in superior electrocatalytic OER performance. Under simulated solar irradiation, <strong>SNUT-39-NW</strong> achieves a current density of 10 mA·cm⁻² at an overpotential of only 124 mV in 0.5 M Na₂SO₄, outperforming the bulk crystal (161 mV) and demonstrating excellent stability over 24 h. Mechanistic studies reveal reduced charge transfer resistance and suppressed carrier recombination, highlighting the advantages of nanostructural engineering in optimizing MOF-based electrocatalysts. This work provides valuable insights for the design of high-performance, non-noble metal catalysts for solar-driven water splitting.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145149"},"PeriodicalIF":4.7,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145838609","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-23DOI: 10.1016/j.molstruc.2025.145144
Ge-Ge Yang , Xing-Wei Luo , Qiao-Xia Zhong , Han-Mou Yu , Desire Girimpuhwe , Jia Wu , Jian-Jin Guo , Yun-Hao Ma , Hao Ren , Dan Xu , Jia-Ling Li , Peng Chen , Quan-Xiang Wu
To exhumate unusual antibacterial natural products, four new polyketides, including a novel spirocyclic polyketide featuring a 1-oxaspiro[4.4]non-6-ene core with a long chain, talaromylactone A (1), a δ-lactone polyketide, talaromylactone B (2), two aromatic polyketides sharing a diphenyl ether framework (3 and 4), and nine known diphenyl ether derivatives (5 − 13) were isolated from the culture of endophytic fungi Talaromyces pinophilus AF-02 of Chinese Allium fistulosum via LC-MS/MS-based GNPS molecular networking analysis. The structures were thoroughly elucidated by comprehensive spectroscopic analysis, X-ray diffraction analysis and quantum mechanical calculations. All the compounds were evaluated for their antibacterial activities. 1, 3, 4, 6, 10, and 13 inhibited the growth of gram-negative bacteria (Klebsiella pneumoniae, Escherichia coli , Salmonella typhimurium , Salmonella heidelberg, and Proteus mirabilis) and gram-positive bacteria (Staphylococcus aureus GDQ6P012P, Bacillus subtilis, and Bacillus thuringiensis), with MIC values ranging from 6.25 to 25 μg/mL. Specifically, the activities of 3 and 4 were significant against K. pneumoniae and S. heidelberg, with MICs of 6.25 and 12.5 μg/mL, respectively, similar to those of the positive controls chloramphenicol and levofloxacin, respectively. Molecular docking, dynamics simulations, and the DNA gyrase inhibitor assay confirmed the DNA gyrase subunit A as a potential target for diphenyl ether polyketides, with 3 showing the strongest binding energy of −7.7 kcal/mol and a potent inhibition effect of DNA gyrase, with an IC₅₀ of 1.55 μM, comparable to levofloxacin, with a binding energy of −7.8 kcal/mol and an IC₅₀ of 0.56 μM, respectively, indicating its promise as a lead compound for the development of antibiotics.
{"title":"New antibacterial polyketides from the plant endophytic f ungi Talaromyces pinophilus AF-02 and their molecular modelling studies","authors":"Ge-Ge Yang , Xing-Wei Luo , Qiao-Xia Zhong , Han-Mou Yu , Desire Girimpuhwe , Jia Wu , Jian-Jin Guo , Yun-Hao Ma , Hao Ren , Dan Xu , Jia-Ling Li , Peng Chen , Quan-Xiang Wu","doi":"10.1016/j.molstruc.2025.145144","DOIUrl":"10.1016/j.molstruc.2025.145144","url":null,"abstract":"<div><div>To exhumate unusual antibacterial natural products, four new polyketides, including a novel spirocyclic polyketide featuring a 1-oxaspiro[4.4]non-6-ene core with a long chain, talaromylactone A (<strong>1</strong>), a <em>δ</em>-lactone polyketide, talaromylactone B (<strong>2</strong>), two aromatic polyketides sharing a diphenyl ether framework (<strong>3</strong> and <strong>4</strong>), and nine known diphenyl ether derivatives (<strong>5</strong> − <strong>13</strong>) were isolated from the culture of endophytic fungi <em>Talaromyces pinophilus</em> AF-02 of Chinese <em>Allium fistulosum</em> via LC-MS/MS-based GNPS molecular networking analysis. The structures were thoroughly elucidated by comprehensive spectroscopic analysis, X-ray diffraction analysis and quantum mechanical calculations. All the compounds were evaluated for their antibacterial activities. <strong>1, 3, 4, 6, 10</strong>, and <strong>13</strong> inhibited the growth of gram-negative bacteria (<em>Klebsiella pneumoniae, Escherichia coli</em> , <em>Salmonella typhimurium</em> , <em>Salmonella heidelberg</em>, and <em>Proteus mirabilis</em>) and gram-positive bacteria (<em>Staphylococcus aureus</em> GDQ6P012P, <em>Bacillus subtilis,</em> and <em>Bacillus thuringiensis</em>), with MIC values ranging from 6.25 to 25 μg/mL. Specifically, the activities of <strong>3</strong> and <strong>4</strong> were significant against <em>K. pneumoniae</em> and <em>S. heidelberg</em>, with MICs of 6.25 and 12.5 μg/mL, respectively, similar to those of the positive controls chloramphenicol and levofloxacin, respectively. Molecular docking, dynamics simulations, and the DNA gyrase inhibitor assay confirmed the DNA gyrase subunit A as a potential target for diphenyl ether polyketides, with <strong>3</strong> showing the strongest binding energy of −7.7 kcal/mol and a potent inhibition effect of DNA gyrase, with an IC₅₀ of 1.55 μM, comparable to levofloxacin, with a binding energy of −7.8 kcal/mol and an IC₅₀ of 0.56 μM, respectively, indicating its promise as a lead compound for the development of antibiotics.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145144"},"PeriodicalIF":4.7,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145838737","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-23DOI: 10.1016/j.molstruc.2025.145141
Shixiong Li , Chuqing Zhang , Xianzong Wu , Pei Luo
The application of metal-organic frameworks (MOFs) for adsorbing pollutants from real wastewater requires consideration of the influence of coexisting inorganic ions. In this study, a zinc-based MOF, {[(HDMA)2][Zn2(DMA)2(L)3]·H2O·DMF}n (where DMA = dimethylamine) (Zn-MOF) was synthesized by reacting terephthalic acid (H2L) with Zn(NO3)2·6H2O in N,N-dimethylformamide (DMF). This framework features hexagonal pores with dimensions of approximately 18.36 × 18.36 Å. A nano-adsorbent version, Zn-MOF-N, with an average particle diameter of 100 nm, was also prepared. Zn-MOF-N exhibited a high maximum equilibrium adsorption capacity for Cr(VI) of 257.9 mg/g at 20°C and pH 6.50 (its isoelectric point), outperforming most reported MOF-based adsorbents. However, the presence of coexisting metal cations (Na+, K+, Ca2+, Mg2+) and inorganic anions (Cl-, NO3-, SO42-, PO43-) was found to inhibit Cr(VI) adsorption. The metal cations increase the ionic strength of the solution, compressing the electrical double layer and thereby weakening the electrostatic attraction between Zn-MOF-N and Cr(VI). In contrast, inorganic anions compete with Cr(VI) for adsorption sites on the surface of Zn-MOF-N, leading to a significant reduction in uptake. The inhibitory effect of anions followed the order: PO43- > SO42- > NO3- > Cl-. This study clarifies how coexisting inorganic ions affect the adsorption performance of MOFs, supporting their potential application in real wastewater treatment.
{"title":"Influence and mechanism of inorganic ions on Cr(VI) adsorption from wastewater by zinc-based metal-organic framework","authors":"Shixiong Li , Chuqing Zhang , Xianzong Wu , Pei Luo","doi":"10.1016/j.molstruc.2025.145141","DOIUrl":"10.1016/j.molstruc.2025.145141","url":null,"abstract":"<div><div>The application of metal-organic frameworks (MOFs) for adsorbing pollutants from real wastewater requires consideration of the influence of coexisting inorganic ions. In this study, a zinc-based MOF, {[(HDMA)<sub>2</sub>][Zn<sub>2</sub>(DMA)<sub>2</sub>(L)<sub>3</sub>]·H<sub>2</sub>O·DMF}<sub>n</sub> (where DMA = dimethylamine) (Zn-MOF) was synthesized by reacting terephthalic acid (H<sub>2</sub>L) with Zn(NO<sub>3</sub>)<sub>2</sub>·6H<sub>2</sub>O in N,N-dimethylformamide (DMF). This framework features hexagonal pores with dimensions of approximately 18.36 × 18.36 Å. A nano-adsorbent version, Zn-MOF-N, with an average particle diameter of 100 nm, was also prepared. Zn-MOF-N exhibited a high maximum equilibrium adsorption capacity for Cr(VI) of 257.9 mg/g at 20°C and pH 6.50 (its isoelectric point), outperforming most reported MOF-based adsorbents. However, the presence of coexisting metal cations (Na<sup>+</sup>, K<sup>+</sup>, Ca<sup>2+</sup>, Mg<sup>2+</sup>) and inorganic anions (Cl<sup>-</sup>, NO<sub>3</sub><sup>-</sup>, SO<sub>4</sub><sup>2-</sup>, PO<sub>4</sub><sup>3-</sup>) was found to inhibit Cr(VI) adsorption. The metal cations increase the ionic strength of the solution, compressing the electrical double layer and thereby weakening the electrostatic attraction between Zn-MOF-N and Cr(VI). In contrast, inorganic anions compete with Cr(VI) for adsorption sites on the surface of Zn-MOF-N, leading to a significant reduction in uptake. The inhibitory effect of anions followed the order: PO<sub>4</sub><sup>3-</sup> > SO<sub>4</sub><sup>2-</sup> > NO<sub>3</sub><sup>-</sup> > Cl<sup>-</sup>. This study clarifies how coexisting inorganic ions affect the adsorption performance of MOFs, supporting their potential application in real wastewater treatment.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1356 ","pages":"Article 145141"},"PeriodicalIF":4.7,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145838575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}