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Structural and antigenic characterization of a novel genotype of Mfa1 fimbriae in Porphyromonas gingivalis. 牙龈卟啉单胞菌Mfa1新基因型的结构和抗原特征。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2023.2215551
Miyuna Fujimoto, Yoshikazu Naiki, Kotaro Sakae, Tomohiko Iwase, Naoyoshi Miwa, Keiji Nagano, Hiroyuki Nawa, Yoshiaki Hasegawa

Background: Mfa1 fimbriae of the periodontal pathogen Porphyromonas gingivalis are responsible for biofilm formation and comprise five proteins: Mfa1-5. Two major genotypes, mfa170 and mfa153, encode major fimbrillin. The mfa170 genotype is further divided into the mfa170A and mfa170B subtypes. The properties of the novel mfa170B remain unclear.

Methods: Fimbriae were purified from P. gingivalis strains JI-1 (mfa170A), 1439 (mfa170B), and Ando (mfa153), and their components and their structures were analyzed. Protein expression and variability in the antigenic specificity of fimbrillins were compared using Coomassie staining and western blotting using polyclonal antibodies against Mfa170A, Mfa170B, and Mfa153 proteins. Cell surface expression levels of fimbriae were analyzed by filtration enzyme-linked immunosorbent assays.

Results: The composition and structures of the purified Mfa1 fimbriae of 1439 was similar to that of JI-1. However, each Mfa1 protein of differential subtype/genotype was specifically detected by western blotting. Mfa170B fimbriae were expressed in several strains such as 1439, JKG9, B42, 1436, and Kyudai-3. Differential protein expression and antigenic heterogeneities were detected in Mfa2-5 between strains.

Conclusion: Mfa1 fimbriae from the mfa170A and mfa170B genotypes indicated an antigenic difference suggesting the mfa170B, is to be utilized for the novel classification of P. gingivalis.

背景:牙周病原体牙龈卟啉单胞菌的Mfa1菌膜负责生物膜的形成,由5种蛋白组成:Mfa1-5。两个主要的基因型mfa170和mfa153编码主要的纤维蛋白。mfa170基因型进一步分为mfa170A和mfa170B亚型。新型mfa170B的性质尚不清楚。方法:对龈假单胞菌JI-1 (mfa170A)、1439 (mfa170B)和Ando (mfa153)的菌毛进行纯化,并对其组成和结构进行分析。使用针对Mfa170A、Mfa170B和Mfa153蛋白的多克隆抗体,采用考马斯氏染色和western blotting比较纤原蛋白的蛋白表达和抗原特异性的变异性。采用滤过酶联免疫吸附法分析菌毛细胞表面表达水平。结果:1439纯化的Mfa1菌毛的组成和结构与JI-1相似。western blotting特异检测到不同亚型/基因型的Mfa1蛋白。Mfa170B菌毛在1439、JKG9、B42、1436、Kyudai-3等菌株中均有表达。菌株间Mfa2-5蛋白表达差异及抗原异质性。结论:mfa170A基因型和mfa170B基因型的Mfa1菌毛抗原存在差异,提示mfa170B基因型可用于龈假单胞菌的新分类。
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引用次数: 0
Profiles of oral microbiome associated with nasogastric tube feeding. 与鼻胃管喂养相关的口腔微生物组概况。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2023.2200898
Ding-Han Wang, Fa-Tzu Tsai, Hsi-Feng Tu, Cheng-Chieh Yang, Ming-Lun Hsu, Lin-Jack Huang, Chiu-Tzu Lin, Wun-Eng Hsu, Yu-Cheng Lin

Background: Dysbiosis of oral microbiome causes chronic diseases including dental caries and periodontitis, which frequently affect older patient populations. Severely disabled individuals with impaired swallowing functions may require nutritional supply via nasogastric (NG) tubes, further impacting their oral condition and possibly microbial composition. However, little is known about the effect of NG tube on oral microbes and its potential ramification.

Methods: By using 16S rRNA amplicon sequencing, we characterized the tongue microbiome of 27 patients fed with NG tubes and 26 others fed orally.

Results: The microbial compositions of NG-tube and oral-feeding patients were substantially different, with more Gram-negative aerobes enriched in the presence of NG tube. Specifically, NG-tube patients presented more opportunistic pathogens like Pseudomonas and Corynebacterium associated with pneumonia and lower levels of commensal Streptococcus and Veillonella. Co-occurrence analysis further showed an inverse relationship between commensal and pathogenic species.

Conclusion: We present a systematic, high-throughput profiling of oral microbiome with regard to long-term NG tube feeding among the older patient population.

背景:口腔微生物群失调导致慢性疾病,包括龋齿和牙周炎,这些疾病经常影响老年患者群体。吞咽功能受损的严重残疾人可能需要通过鼻胃管提供营养,这进一步影响了他们的口腔状况和可能的微生物组成。然而,关于NG管对口腔微生物的影响及其潜在分支的了解甚少。方法:采用16S rRNA扩增子测序方法,对27例口服NG管患者和26例口服NG管患者的舌菌群进行了分析。结果:NG管与口服喂养患者的微生物组成存在显著差异,NG管存在时革兰氏阴性需氧菌富集较多。具体而言,ng管患者出现更多与肺炎相关的假单胞菌和棒状杆菌等条件致病菌,而共生链球菌和细孔菌水平较低。共现分析进一步显示共生菌种与致病菌种呈反比关系。结论:我们提出了一个系统的、高通量的口腔微生物组分析关于长期NG管喂养的老年患者人群。
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引用次数: 0
Mechanisms of Porphyromonas gingivalis to translocate over the oral mucosa and other tissue barriers. 牙龈卟啉单胞菌在口腔黏膜和其他组织屏障上移位的机制。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2023.2205291
Caroline A de Jongh, Teun J de Vries, Floris J Bikker, Susan Gibbs, Bastiaan P Krom

Introduction: The oral pathogen Porphyromonas gingivalis is not only associated with periodontitis but also with systemic diseases elsewhere in the body. The mechanisms by which P. gingivalis travels from the oral cavity to other organs in the body are largely unknown. This review describes the four putative mechanisms supported by experimental evidence, which enable translocation of P. gingivalis over the oral mucosa, endothelial barriers and subsequent dissemination into the bloodstream.

Mechanisms: The first mechanism: proteolytic enzymes secreted by P. gingivalis degrade adhesion molecules between tissue cells, and the extracellular matrix. This weakens the structural integrity of the mucosa and allows P. gingivalis to penetrate the tissue. The second is transcytosis: bacteria actively enter tissue cells and transfer to the next layer or the extracellular space. By travelling from cell to cell, P. gingivalis reaches deeper structures. Thirdly, professional phagocytes take up P. gingivalis and travel to the bloodstream where P. gingivalis is released. Lastly, P. gingivalis can adhere to the hyphae forming Candida albicans. These hyphae can penetrate the mucosal tissue, which may allow P. gingivalis to reach deeper structures.

Conclusion: More research could elucidate targets to inhibit P. gingivalis dissemination and prevent the onset of various systemic diseases.

口腔病原体牙龈卟啉单胞菌不仅与牙周炎有关,而且与身体其他部位的全身性疾病有关。牙龈卟啉杆菌从口腔传播到身体其他器官的机制在很大程度上是未知的。本文综述了实验证据支持的四种推测机制,这些机制使牙龈假单胞菌在口腔黏膜、内皮屏障上易位并随后传播到血液中。机制:第一种机制:牙龈假单胞菌分泌的蛋白水解酶降解组织细胞与细胞外基质之间的粘附分子。这会削弱粘膜的结构完整性,使牙龈假单胞菌能够穿透组织。第二种是胞吞作用:细菌主动进入组织细胞并转移到下一层或细胞外空间。通过从一个细胞到另一个细胞,牙龈卟啉卟啉菌到达更深的结构。第三,专业吞噬细胞吸收牙龈假单胞菌并进入血流,在血流中释放牙龈假单胞菌。最后,牙龈假丝酵母可以附着在白色念珠菌的菌丝上。这些菌丝可以穿透粘膜组织,这可能使牙龈假单胞菌到达更深的结构。结论:进一步的研究可以明确抑制牙龈假单胞菌传播和预防各种全身性疾病发生的靶点。
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引用次数: 4
Exopolysaccharides metabolism and cariogenesis of Streptococcus mutans biofilm regulated by antisense vicK RNA. 反义vicK RNA调控变形链球菌生物膜外多糖代谢与龋齿发生。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2023.2204250
Yuting Sun, Hong Chen, Mengmeng Xu, Liwen He, Hongchen Mao, Shiyao Yang, Xin Qiao, Deqin Yang

Background: Streptococcus mutans (S. mutans) is a pivotal cariogenic pathogen contributing to its multiple virulence factors, one of which is synthesizing exopolysaccharides (EPS). VicK, a sensor histidine kinase, plays a major role in regulating genes associated with EPS synthesis and adhesion. Here we first identified an antisense vicK RNA (ASvicK) bound with vicK into double-stranded RNA (dsRNA).

Objective: This study aims to investigate the effect and mechanism of ASvicK in the EPS metabolism and cariogenesis of S. mutans.

Methods: The phenotypes of biofilm were detected by scanning electron microscopy (SEM), gas chromatography-mass spectrometery (GC-MS) , gel permeation chromatography (GPC) , transcriptome analysis and Western blot. Co-immunoprecipitation (Co-ip) assay and enzyme activity experiment were adopted to investigate the mechanism of ASvicK regulation. Caries animal models were developed to study the relationship between ASvicK and cariogenicity of S. mutans.

Results: Overexpression of ASvicK can inhibit the growth of biofilm, reduce the production of EPS and alter genes and protein related to EPS metabolism. ASvicK can adsorb RNase III to regulate vicK and affect the cariogenicity of S. mutans.

Conclusions: ASvicK regulates vicK at the transcriptional and post-transcriptional levels, effectively inhibits EPS synthesis and biofilm formation and reduces its cariogenicity in vivo.

背景:变形链球菌(S. mutans)是一种关键的致龋病原体,具有多种毒力因子,其中之一是合成外多糖(EPS)。VicK是一种传感器组氨酸激酶,在调节EPS合成和粘附相关基因中起主要作用。在这里,我们首先鉴定了一种反义的vicK RNA (ASvicK)与vicK结合成双链RNA (dsRNA)。目的:探讨ASvicK在变形链球菌EPS代谢和龋齿发生中的作用及其机制。方法:采用扫描电镜(SEM)、气相色谱-质谱(GC-MS)、凝胶渗透色谱(GPC)、转录组分析和Western blot检测生物膜的表型。采用共免疫沉淀法(Co-ip)和酶活性实验研究ASvicK的调控机制。为了研究ASvicK与变形链球菌致龋性的关系,建立了龋动物模型。结果:ASvicK过表达可以抑制生物膜的生长,减少EPS的产生,改变EPS代谢相关的基因和蛋白。ASvicK可以吸附RNase III调控vicK,影响变形链球菌的致癌性。结论:ASvicK在转录和转录后水平调控vicK,有效抑制EPS合成和生物膜形成,降低其体内致癌性。
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引用次数: 1
Antimicrobial oral lavage reduces the SARS-CoV-2 load in intubated patients: randomized clinical trial. 抗菌口腔灌洗可降低插管患者的SARS-CoV-2载量:随机临床试验
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2022.2152179
Letícia Mello Bezinelli, Luciana Corrêa, Stephany Beyerstedt, Érika Bevilaqua Rangel, Carlos Benitez, Nelson Hamerschlak, João Renato Rebello Pinho, Debora Heller, Fernanda de Paula Eduardo

Background: The oral cavity can be a reservoir for SARS-CoV-2 and may play a crucial role in the viral transmission in the hospital environment.

Objective: To investigate whether an oral hygiene protocol with chlorhexidine (CHX) used alone and in combination with hydrogen peroxide (HP) in the intensive care unit was effective in reducing the SARS-CoV-2 viral load in the oral cavity.

Methods: SARS-CoV-2 viral load was measured on oral fluid samples collected from patients undergoing orotracheal intubation. The study sample was randomly in: CHX group (n = 19) - oral rinse using only 0.12% CHX solution; HP+CHX group (n = 24) - oral rinse with 1.5% HP and 0.12% CHX. The samples were collected before the interventions (T0), immediately (T1), 30 minutes (T2) and 60 minutes (T3) after the procedure.

Results: A significant viral load reduction was observed at T1 (mean ± SD:-0.57 ± 0.19 log10;-73.2%;p = 0.022) in the HP+CHX group. No statistically significant differences between any time points were observed in the CHX group.

Conclusion: The HP+CHX oral rinses significantly reduced the SARS-CoV-2 viral load in the oral fluid immediately after the procedure. The CHX oral rinse alone did not result in any significant viral load reductions.

背景:口腔可能是SARS-CoV-2的储存库,并可能在医院环境中病毒传播中发挥关键作用。目的:探讨重症监护室单独使用氯己定(CHX)和联合使用双氧水(HP)的口腔卫生方案是否能有效降低口腔内SARS-CoV-2病毒载量。方法:对经口气管插管患者的口腔液样本进行SARS-CoV-2病毒载量测定。研究样本随机分为:CHX组(n = 19) -仅使用0.12% CHX溶液的口腔冲洗液;HP+CHX组(n = 24): 1.5% HP+ 0.12% CHX的口腔冲洗液。样本分别于干预前(T0)、即刻(T1)、干预后30分钟(T2)和60分钟(T3)采集。结果:在T1时,HP+CHX组的病毒载量显著降低(mean±SD:-0.57±0.19 log10;-73.2%;p = 0.022)。CHX组各时间点间无统计学差异。结论:HP+CHX口腔冲洗液可显著降低术后即刻口服液中SARS-CoV-2病毒载量。单独使用CHX口腔冲洗液不能显著降低病毒载量。
{"title":"Antimicrobial oral lavage reduces the SARS-CoV-2 load in intubated patients: randomized clinical trial.","authors":"Letícia Mello Bezinelli,&nbsp;Luciana Corrêa,&nbsp;Stephany Beyerstedt,&nbsp;Érika Bevilaqua Rangel,&nbsp;Carlos Benitez,&nbsp;Nelson Hamerschlak,&nbsp;João Renato Rebello Pinho,&nbsp;Debora Heller,&nbsp;Fernanda de Paula Eduardo","doi":"10.1080/20002297.2022.2152179","DOIUrl":"https://doi.org/10.1080/20002297.2022.2152179","url":null,"abstract":"<p><strong>Background: </strong>The oral cavity can be a reservoir for SARS-CoV-2 and may play a crucial role in the viral transmission in the hospital environment.</p><p><strong>Objective: </strong>To investigate whether an oral hygiene protocol with chlorhexidine (CHX) used alone and in combination with hydrogen peroxide (HP) in the intensive care unit was effective in reducing the SARS-CoV-2 viral load in the oral cavity.</p><p><strong>Methods: </strong>SARS-CoV-2 viral load was measured on oral fluid samples collected from patients undergoing orotracheal intubation. The study sample was randomly in: CHX group (n = 19) - oral rinse using only 0.12% CHX solution; HP+CHX group (n = 24) - oral rinse with 1.5% HP and 0.12% CHX. The samples were collected before the interventions (T0), immediately (T1), 30 minutes (T2) and 60 minutes (T3) after the procedure.</p><p><strong>Results: </strong>A significant viral load reduction was observed at T1 (mean ± SD:-0.57 ± 0.19 log10;-73.2%;p = 0.022) in the HP+CHX group. No statistically significant differences between any time points were observed in the CHX group.</p><p><strong>Conclusion: </strong>The HP+CHX oral rinses significantly reduced the SARS-CoV-2 viral load in the oral fluid immediately after the procedure. The CHX oral rinse alone did not result in any significant viral load reductions.</p>","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"15 1","pages":"2152179"},"PeriodicalIF":4.5,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161956/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9799442","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Exploration of the interplay between spatially distinct microbial habitats through comparative analysis. 通过比较分析探索不同空间微生物栖息地之间的相互作用。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2023.2229693
Hyunji Kim, Jin-Sil Hong, Pil-Young Yun, Kyung-Gyun Hwang, Keun-Suh Kim, Hyo-Jung Lee, Kyoung Un Park

Objectives: The oral microbiome is closely associated with systemic diseases, indicating the presence of bacteremia and inflammatory mediators in the systemic circulation. Our research aims to investigate the relationship between the oral microbiome and other microbial habitats.

Methods: We analyzed 180 specimens from 36 patients, including saliva, buccal swab, plaque, stool, and blood samples from a healthy group (Non_PD, n = 18) and a periodontitis group (PD, n = 18). The final analysis included 147 specimens, with varying sample sizes for each group. Metagenomic analysis was performed using prokaryotic 16S rRNA on the MiSeq platform (Illumina).

Results: PD saliva showed significant richness differences (P's < 0.05), similar to plaque. Buccal swabs had slight variations. Microbial network analysis revealed altered microbial interactions in the PD group, with decreased interactions in saliva and buccal swabs, and increased interactions in plaque. In our analysis of nine specimens where all paired habitat samples could be analyzed, microorganisms linked to oral periodontitis were found in sterile blood samples, resembling the oral cavity's composition.

Conclusions: Microbiome differences should consider overall microbial-environment interactions, alongside diversity and richness. Our data cautiously suggest that disease-related changes in the salivary microbiome may be reflected in blood specimens through the oral-blood axis.

目的:口腔微生物组与全身性疾病密切相关,表明在体循环中存在菌血症和炎症介质。我们的研究旨在探讨口腔微生物群与其他微生物栖息地之间的关系。方法:我们分析了来自36例患者的180份样本,包括唾液、口腔拭子、菌斑、粪便和血液样本,这些样本来自健康组(Non_PD, n = 18)和牙周炎组(PD, n = 18)。最终的分析包括147个样本,每个组的样本量不同。在MiSeq平台(Illumina)上使用原核16S rRNA进行宏基因组分析。结果:PD唾液显示出显著的丰富度差异(P’s结论:微生物组的差异除了多样性和丰富度外,还应考虑整体微生物与环境的相互作用。我们的数据谨慎地表明,唾液微生物组的疾病相关变化可能通过口腔-血液轴反映在血液标本中。
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引用次数: 0
Targeting cariogenic pathogens and promoting competitiveness of commensal bacteria with a novel pH-responsive antimicrobial peptide. 一种新的ph反应抗菌肽靶向龋齿致病菌并促进共生菌的竞争。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2022.2159375
Wentao Jiang, Zhuo Xie, Shuheng Huang, Qiting Huang, Lingling Chen, Xianling Gao, Zhengmei Lin

Novel ecological antimicrobial approaches to dental caries focus on inhibiting cariogenic pathogens while enhancing the growth of health-associated commensal communities or suppressing cariogenic virulence without affecting the diversity of oral microbiota, which emphasize the crucial role of establishing a healthy microbiome in caries prevention. Considering that the acidified cariogenic microenvironment leads to the dysbiosis of microecology and demineralization of enamel, exploiting the acidic pH as a bioresponsive trigger to help materials and medications target cariogenic pathogens is a promising strategy to develop novel anticaries approaches. In this study, a pH-responsive antimicrobial peptide, LH12, was designed utilizing the pH-sensitivity of histidine, which showed higher cationicity and stronger interactions with bacterial cytomembranes at acidic pH. Streptococcus mutans was used as the in vitro caries model to evaluate the inhibitory effects of LH12 on the cariogenic properties, such as biofilm formation, biofilm morphology, acidurance, acidogenicity, and exopolysaccharides synthesis. The dual-species model of Streptococcus mutans and Streptococcus gordonii was established in vitro to evaluate the regulation effects of LH12 on the mixed species microbial community containing both cariogenic bacteria and commensal bacteria. LH12 suppressed the cariogenic properties and regulated the bacterial composition to a healthier condition through a dual-functional mechanism. Firstly, LH12-targeted cariogenic pathogens in response to the acidified microenvironment and suppressed the cariogenic virulence by inhibiting the expression of multiple virulence genes and two-component signal transduction systems. Additionally, LH12 elevated H2O2 production of the commensal bacteria and subsequently improved the ecological competitiveness of the commensals. The dual-functional mechanism made LH12 a potential bioresponsive approach to caries management.

新型的生态抗菌龋病治疗方法侧重于在不影响口腔微生物群多样性的情况下抑制蛀牙病原体,同时促进与健康相关的共生群落的生长或抑制蛀牙毒力,这强调了建立健康的微生物群在预防蛀牙中的重要作用。考虑到牙釉质微环境酸化导致牙釉质微生态失调和脱矿,利用酸性pH作为生物反应触发来帮助材料和药物靶向牙釉质病原体是一种很有前景的新型抗龋方法。本研究利用组氨酸对ph的敏感性,设计了一种ph响应型抗菌肽LH12,在酸性ph下,LH12具有更高的阳离子性,与细菌细胞膜的相互作用更强。以变形链球菌为体外龋模型,评价LH12对生物膜形成、生物膜形态、酸度、致酸性和外多糖合成等致龋特性的抑制作用。体外建立变形链球菌和哥氏链球菌双种模型,评价LH12对既有蛀牙菌又有共生菌的混合种微生物群落的调节作用。LH12通过双功能机制抑制龋齿特性,调节细菌组成,使其更健康。首先,lh12通过抑制多种毒力基因和双组分信号转导系统的表达,针对酸化微环境的致龋致病菌,抑制致龋毒力。此外,LH12提高了共生菌的H2O2产量,从而提高了共生菌的生态竞争力。这种双重功能机制使LH12成为一种潜在的龋齿管理生物响应方法。
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引用次数: 4
Orofacial clefts alter early life oral microbiome maturation towards higher levels of potentially pathogenic species: A prospective observational study. 一项前瞻性观察研究表明,口面部裂改变了早期生活中口腔微生物群的成熟,使其向更高水平的潜在致病性物种发展。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2022.2164147
Corinna L Seidel, Karin Strobel, Matthias Weider, Marco Tschaftari, Christoph Unertl, Ines Willershausen, Manuel Weber, André Hoerning, Patrick Morhart, Michael Schneider, Matthias W Beckmann, Christian Bogdan, Roman G Gerlach, Lina Gölz

Orofacial clefts (OFC) present different phenotypes with a postnatal challenge for oral microbiota development. In order to investigate the impact of OFC on oral microbiota, smear samples from 15 neonates with OFC and 17 neonates without OFC were collected from two oral niches (tongue, cheek) at two time points, i.e. after birth (T0: Ø3d OFC group; Ø2d control group) and 4-5 weeks later (T1: Ø32d OFC group; Ø31d control group). Subsequently, the samples were analyzed using next-generation sequencing. We detected a significant increase of alpha diversity and anaerobic and Gram-negative species from T0 to T1 in both groups. Further, we found that at T1 OFC neonates presented a significantly lower alpha diversity (lowest values for high cleft severity) and significantly higher levels of Enterobacteriaceae (Citrobacter, Enterobacter, Escherichia-Shigella, Klebsiella), Enterococcus, Bifidobacterium, Corynebacterium, Lactocaseibacillus, Staphylococcus, Acinetobacter and Lawsonella compared to controls. Notably, neonates with unilateral and bilateral cleft lip and palate (UCLP/BCLP) presented similarities in beta diversity and a mixture with skin microbiota. However, significant differences were seen in neonates with cleft palate only compared to UCLP/BCLP with higher levels of anaerobic species. Our findings revealed an influence of OFC as well as cleft phenotype and severity on postnatal oral microbiota maturation.

口腔面裂(OFC)呈现出不同的表型,并对出生后的口腔微生物群发育提出了挑战。为了研究OFC对口腔微生物群的影响,在两个时间点采集了15名OFC新生儿和17名未OFC新生儿的两个口腔生态位(舌头、脸颊)的抹片样本,即出生后(T0: Ø3d OFC组;Ø2d对照组)和4-5周后(T1: Ø32d OFC组;Ø31d对照组)。随后,使用下一代测序对样品进行分析。我们发现,从T0到T1,两组的α多样性和厌氧和革兰氏阴性物种显著增加。此外,我们发现,与对照组相比,在T1 OFC时,新生儿的α多样性显著降低(高裂口严重程度的值最低),肠杆菌科(Citrobacter, Enterobacter, Escherichia-Shigella, Klebsiella)、肠球菌、双歧杆菌、杆状杆菌、乳干酪杆菌、葡萄球菌、不动杆菌和Lawsonella的水平显著提高。值得注意的是,单侧和双侧唇腭裂新生儿(UCLP/BCLP)在β多样性和皮肤微生物群混合物方面具有相似性。然而,与UCLP/BCLP相比,在腭裂新生儿中发现了显著差异,其厌氧物种水平较高。我们的研究结果揭示了OFC以及唇裂表型和严重程度对出生后口腔微生物群成熟的影响。
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引用次数: 1
SARS-CoV-2 RT-qPCR Ct values in saliva and nasopharyngeal swab samples for disease severity prediction. 唾液和鼻咽拭子样本中SARS-CoV-2 RT-qPCR Ct值用于疾病严重程度预测
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2023.2213106
Kristina Snipaitiene, Birute Zablockiene, Rasa Sabaliauskaite, Kristina Zukauskaite, Elzbieta Matulyte, Tautvile Smalinskaite, Mindaugas Paulauskas, Rolandas Zablockis, Mantvydas Lopeta, Julius Gagilas, Alina Puriene, Ligita Jancoriene, Sonata Jarmalaite

Background: Comparison of clinical value of RT-qPCR-based SARS-CoV-2 tests performed on saliva samples (SSs) and nasopharyngeal swab samples (NPSs) for prediction of the COVID-19 disease severity.

Methods: Three paired SSs and NPSs collected every 3 days from 100 hospitalised COVID-19 patients during 2020 Jul-2021 Jan were tested by RT-qPCR for the original SARS-CoV-2 virus and compared to 150 healthy controls. Cases were divided into mild+moderate (Cohort I, N = 47) and severe disease (Cohort II, N = 53) cohorts and compared.

Results: SARS-CoV-2 was detected in 65% (91/140) vs. 53% (82/156) of NPSs and 49% (68/139) vs. 48% (75/157) of SSs collected from Cohort I and II, respectively, resulting in the total respective detection rates of 58% (173/296) vs. 48% (143/296) (P = 0.017). Ct values of SSs were lower than those of NPSs (mean Ct = 28.01 vs. 30.07, P = 0.002). Although Ct values of the first SSs were significantly lower in Cohort I than in Cohort II (P = 0.04), it became negative earlier (mean 11.7 vs. 14.8 days, P = 0.005). Multivariate Cox proportional hazards regression analysis showed that Ct value ≤30 from SSs was the independent predictor for severe COVID-19 (HR = 10.06, 95% CI: 1.84-55.14, P = 0.008).

Conclusion: Salivary RT-qPCR testing is suitable for SARS-CoV-2 infection control, while simple measurement of Ct values can assist in prediction of COVID-19 severity.

背景:比较唾液样本(SSs)和鼻咽拭子样本(nps)基于rt - qpcr的SARS-CoV-2检测预测COVID-19疾病严重程度的临床价值。方法:采用RT-qPCR方法对2020年7月至2021年1月期间100例住院COVID-19患者每3天采集3对ss和nps进行SARS-CoV-2病毒的检测,并与150名健康对照进行比较。将病例分为轻+中度(队列I, N = 47)和重度(队列II, N = 53)两组进行比较。结果:队列1和队列2的nps检出率分别为65%(91/140)和53% (82/156),SSs检出率分别为49%(68/139)和48%(75/157),总检出率分别为58%(173/296)和48%(143/296),差异有统计学意义(P = 0.017)。SSs组的Ct值低于nps组(平均Ct = 28.01 vs. 30.07, P = 0.002)。虽然队列1的第一次SSs的Ct值明显低于队列2 (P = 0.04),但变为阴性的时间更早(平均11.7天比14.8天,P = 0.005)。多因素Cox比例风险回归分析显示,SSs的Ct值≤30是重症COVID-19的独立预测因子(HR = 10.06, 95% CI: 1.84 ~ 55.14, P = 0.008)。结论:唾液RT-qPCR检测适用于SARS-CoV-2感染控制,而简单测量Ct值可辅助预测covid - cov -2严重程度。
{"title":"SARS-CoV-2 RT-qPCR Ct values in saliva and nasopharyngeal swab samples for disease severity prediction.","authors":"Kristina Snipaitiene,&nbsp;Birute Zablockiene,&nbsp;Rasa Sabaliauskaite,&nbsp;Kristina Zukauskaite,&nbsp;Elzbieta Matulyte,&nbsp;Tautvile Smalinskaite,&nbsp;Mindaugas Paulauskas,&nbsp;Rolandas Zablockis,&nbsp;Mantvydas Lopeta,&nbsp;Julius Gagilas,&nbsp;Alina Puriene,&nbsp;Ligita Jancoriene,&nbsp;Sonata Jarmalaite","doi":"10.1080/20002297.2023.2213106","DOIUrl":"https://doi.org/10.1080/20002297.2023.2213106","url":null,"abstract":"<p><strong>Background: </strong>Comparison of clinical value of RT-qPCR-based SARS-CoV-2 tests performed on saliva samples (SSs) and nasopharyngeal swab samples (NPSs) for prediction of the COVID-19 disease severity.</p><p><strong>Methods: </strong>Three paired SSs and NPSs collected every 3 days from 100 hospitalised COVID-19 patients during 2020 Jul-2021 Jan were tested by RT-qPCR for the original SARS-CoV-2 virus and compared to 150 healthy controls. Cases were divided into mild+moderate (Cohort I, <i>N</i> = 47) and severe disease (Cohort II, <i>N</i> = 53) cohorts and compared.</p><p><strong>Results: </strong>SARS-CoV-2 was detected in 65% (91/140) vs. 53% (82/156) of NPSs and 49% (68/139) vs. 48% (75/157) of SSs collected from Cohort I and II, respectively, resulting in the total respective detection rates of 58% (173/296) vs. 48% (143/296) (<i>P</i> = 0.017). Ct values of SSs were lower than those of NPSs (mean Ct = 28.01 vs. 30.07, <i>P</i> = 0.002). Although Ct values of the first SSs were significantly lower in Cohort I than in Cohort II (<i>P</i> = 0.04), it became negative earlier (mean 11.7 vs. 14.8 days, <i>P</i> = 0.005). Multivariate Cox proportional hazards regression analysis showed that Ct value ≤30 from SSs was the independent predictor for severe COVID-19 (HR = 10.06, 95% CI: 1.84-55.14, <i>P</i> = 0.008).</p><p><strong>Conclusion: </strong>Salivary RT-qPCR testing is suitable for SARS-CoV-2 infection control, while simple measurement of Ct values can assist in prediction of COVID-19 severity.</p>","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"15 1","pages":"2213106"},"PeriodicalIF":4.5,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10193917/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10195632","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regulatory mechanisms of exopolysaccharide synthesis and biofilm formation in Streptococcus mutans. 变形链球菌胞外多糖合成和生物膜形成的调控机制。
IF 4.5 2区 医学 Q2 MICROBIOLOGY Pub Date : 2023-01-01 DOI: 10.1080/20002297.2023.2225257
Ting Zheng, Meiling Jing, Tao Gong, Jiangchuan Yan, Xiaowan Wang, Mai Xu, Xuedong Zhou, Jumei Zeng, Yuqing Li

Background: Dental caries is a chronic, multifactorial and biofilm-mediated oral bacterial infection affecting almost every age group and every geographical region. Streptococcus mutans is considered an important pathogen responsible for the initiation and development of dental caries. It produces exopolysaccharides in situ to promote the colonization of cariogenic bacteria and coordinate dental biofilm development.

Objective: The understanding of the regulatory mechanism of S. mutans biofilm formation can provide a theoretical basis for the prevention and treatment of caries.

Design: At present, an increasing number of studies have identified many regulatory systems in S. mutans that regulate biofilm formation, including second messengers (e.g. c-di-AMP, Ap4A), transcription factors (e.g. EpsR, RcrR, StsR, AhrC, FruR), two-component systems (e.g. CovR, VicR), small RNA (including sRNA0426, srn92532, and srn133489), acetylation modifications (e.g. ActG), CRISPR-associated proteins (e.g. Cas3), PTS systems (e.g. EIIAB), quorum-sensing signaling system (e.g. LuxS), enzymes (including Dex, YidC, CopZ, EzrA, lmrB, SprV, RecA, PdxR, MurI) and small-molecule metabolites.

Results: This review summarizes the recent progress in the molecular regulatory mechanisms of exopolysaccharides synthesis and biofilm formation in S. mutans.

背景:龋齿是一种慢性的、多因素的、生物膜介导的口腔细菌感染,几乎影响每个年龄组和每个地理区域。变形链球菌被认为是导致龋齿发生和发展的重要病原体。它在原位产生外多糖,促进蛀牙细菌的定植,协调牙生物膜的发育。目的:了解变形链球菌生物膜形成的调控机制,为龋齿的防治提供理论依据。设计:目前,越来越多的研究已经在变形葡萄球菌中发现了许多调节生物膜形成的调控系统,包括第二信使(如c- i- amp、Ap4A)、转录因子(如EpsR、RcrR、StsR、AhrC、FruR)、双组分系统(如CovR、VicR)、小RNA(包括sRNA0426、srn92532和srn133489)、乙酰化修饰(如ActG)、crispr相关蛋白(如Cas3)、PTS系统(如EIIAB)、群体感应信号系统(如LuxS)、酶(包括Dex、YidC、CopZ、EzrA、lmrB、SprV、RecA、PdxR、MurI)和小分子代谢物。结果:本文综述了变形链球菌胞外多糖合成和生物膜形成的分子调控机制的最新进展。
{"title":"Regulatory mechanisms of exopolysaccharide synthesis and biofilm formation in Streptococcus mutans.","authors":"Ting Zheng,&nbsp;Meiling Jing,&nbsp;Tao Gong,&nbsp;Jiangchuan Yan,&nbsp;Xiaowan Wang,&nbsp;Mai Xu,&nbsp;Xuedong Zhou,&nbsp;Jumei Zeng,&nbsp;Yuqing Li","doi":"10.1080/20002297.2023.2225257","DOIUrl":"https://doi.org/10.1080/20002297.2023.2225257","url":null,"abstract":"<p><strong>Background: </strong>Dental caries is a chronic, multifactorial and biofilm-mediated oral bacterial infection affecting almost every age group and every geographical region. <i>Streptococcus mutans</i> is considered an important pathogen responsible for the initiation and development of dental caries. It produces exopolysaccharides <i>in situ</i> to promote the colonization of cariogenic bacteria and coordinate dental biofilm development.</p><p><strong>Objective: </strong>The understanding of the regulatory mechanism of <i>S. mutans</i> biofilm formation can provide a theoretical basis for the prevention and treatment of caries.</p><p><strong>Design: </strong>At present, an increasing number of studies have identified many regulatory systems in <i>S. mutans</i> that regulate biofilm formation, including second messengers (e.g. c-di-AMP, Ap4A), transcription factors (e.g. EpsR, RcrR, StsR, AhrC, FruR), two-component systems (e.g. CovR, VicR), small RNA (including sRNA0426, srn92532, and srn133489), acetylation modifications (e.g. ActG), CRISPR-associated proteins (e.g. Cas3), PTS systems (e.g. EIIAB), quorum-sensing signaling system (e.g. LuxS), enzymes (including Dex, YidC, CopZ, EzrA, lmrB, SprV, RecA, PdxR, MurI) and small-molecule metabolites.</p><p><strong>Results: </strong>This review summarizes the recent progress in the molecular regulatory mechanisms of exopolysaccharides synthesis and biofilm formation in <i>S. mutans</i>.</p>","PeriodicalId":16598,"journal":{"name":"Journal of Oral Microbiology","volume":"15 1","pages":"2225257"},"PeriodicalIF":4.5,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10281425/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10545149","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
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Journal of Oral Microbiology
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