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Alteration in the Raman spectra of characteristic rock-forming silicate mixtures due to micrometeorite bombardment 微陨石轰击导致特征成岩硅酸盐混合物拉曼光谱的改变
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-11 DOI: 10.1002/jrs.6676
Iris Weber, Sergey G. Pavlov, Ute Böttger, Maximilian P. Reitze

Innovative techniques are required for the in situ investigation of the surfaces of planetary bodies when landings are planned. Raman spectroscopy turned out as an excellent tool for fast mineralogical analyses on space missions. Contribution from a photoluminescence signal is not unexpected and is likely to be even more pronounced on celestial surfaces with a dilute or absent atmosphere exposed to strong space weathering, for example, micrometeorite bombardment. Such signals were found, for example, in Raman analysis of the probes from sample-return missions. While photoluminescence is generally considered as an accompanying undesired product in the Raman spectral measurement, our studies show that some analytical information can be derived from this signal, and even more, due to the specific correlation of luminescence intensity with space weathering products. Therefore, we investigate the Raman spectra alteration of characteristic rock-forming mineral mixtures (olivine, pyroxene and plagioclase) by micrometeorite bombardment, which is simulated by nanosecond-pulse laser irradiation. The changes in the minerals are strongly dependent on the composition and structure. They range from disappearing changes in the minerals with simple chemistry and structure to complete amorphization of minerals with relatively low melting enthalpy. With Raman spectroscopy, we found out that the photoluminescence signals show resonant or anti-resonant changes to specific mineral phases and amorphization. Furthermore, ablation-induced iron nanoparticles of minerals containing Fe are detectable by Raman spectroscopy due to their alteration into iron oxides. Trapped volatiles in the matrices are analysed due to the formation of the compounds containing them. This broad spectrum of results indicating specific change phenomena due to space weathering can be effectively used for in situ Raman analysis in planetary missions.

在计划着陆时,需要采用创新技术对行星体表面进行现场调查。拉曼光谱是在太空任务中进行快速矿物学分析的绝佳工具。光致发光信号的贡献并非意料之外,在大气稀薄或没有大气层的天体表面,暴露在强烈的空间风化(如微陨石轰击)中,光致发光信号的贡献可能会更加明显。例如,在对样本返回任务的探测器进行拉曼分析时就发现了这种信号。虽然光致发光通常被认为是拉曼光谱测量中不受欢迎的附带产物,但我们的研究表明,可以从这一信号中获得一些分析信息,甚至由于发光强度与空间风化产物的特定相关性,还可以获得更多信息。因此,我们研究了微陨石轰击对特征成岩矿物混合物(橄榄石、辉石和斜长石)的拉曼光谱改变。矿物的变化与成分和结构密切相关。变化范围从化学和结构简单的矿物的消失到熔焓相对较低的矿物的完全变质。通过拉曼光谱,我们发现光致发光信号在特定矿物相和变质过程中会出现共振或反共振变化。此外,拉曼光谱还可检测到烧蚀诱导的含铁矿物的铁纳米颗粒,因为它们已转变为铁氧化物。基质中的捕获挥发物可通过含有它们的化合物的形成进行分析。这一广泛的结果表明了空间风化引起的特定变化现象,可有效地用于行星飞行任务中的原位拉曼分析。
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引用次数: 0
Morphological effect on Core@shell AuAg nanoparticles for detecting p-aminothiophenol dimerization by surface-enhanced Raman spectroscopy 利用表面增强拉曼光谱检测对氨基苯硫酚二聚物的 Core@shell AuAg 纳米粒子的形态学效应
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-10 DOI: 10.1002/jrs.6677
María de la Cabeza Fernández, Alexis Alvear-Jiménez, Arantxa Forte-Castro, Rafael Contreras-Cáceres, María Rosa López-Ramírez

A series of non-spherical metallic Au and bimetallic core@shell AuAg nanoparticles (NPs) have been synthesized for SERS improvements. The bimetallic core@shell AuAg NPs were obtained through a controlled overgrowth of an Ag shell onto the surface of two types of non-spherical Au NPs, used as seeds, Au nanooctaheda (Au NOc) and Au nanotriangles (Au NTs). This Ag overgrowth was able to produce bimetallic core@shell structures such as nanocubes and nanopyramids, respectively. Transmission electron microscopy (TEM) was used to determine the particle size and particle morphology for metallic and bimetallic NPs, and energy-dispersive X-ray (EDX) elemental mapping analysis confirmed the core@shell structure of the bimetallic NPs. The plasmonic absorption bands exhibited for each nanosystem were observed by UV–vis spectroscopy. The concentration of Au and Ag in the bimetallic systems was determined by inductively coupled plasma mass spectrometry (ICP-MS). After synthesis and characterization, p-aminothiophenol (PATP) was used as a model analyte to investigate the surface-enhanced Raman spectroscopy (SERS) capabilities of the synthesized metallic and bimetallic nanosystems. In PATP, a dimerization reaction to 4,4′-dimercaptoazobenzene (DMAB) is produced when it is adsorbed onto the surface of certain noble metals. This SERS analysis was performed at 10−4 M of PATP and by using two different laser wavelengths (532 and 785 nm) in all cases. In this context, we were able to detect the dimerization reaction of PATP to DMAB only for the bimetallic structures and under the 532 nm laser line. Moreover, we have found that the dimerization capacity also depends on the nanoparticle morphology.

为了改进 SERS,我们合成了一系列非球形金属金和双金属核@壳金银纳米粒子(NPs)。双金属核@壳 AuAg NPs 是通过在两种非球形 Au NPs(Au 纳米八面体(Au NOc)和 Au 纳米三角形(Au NTs))表面受控过度生长银壳而获得的。这种银的过度生长能够产生双金属核@壳结构,如纳米立方体和纳米金字塔。透射电子显微镜(TEM)用于确定金属和双金属 NPs 的粒度和颗粒形态,能量色散 X 射线(EDX)元素图谱分析证实了双金属 NPs 的核@壳结构。紫外-可见光谱观察了每个纳米系统的等离子吸收带。通过电感耦合等离子体质谱(ICP-MS)测定了双金属系统中金和银的浓度。在合成和表征之后,以对氨基苯硫酚(PATP)为模型分析物,研究合成的金属和双金属纳米系统的表面增强拉曼光谱(SERS)能力。在 PATP 中,当某些贵金属表面吸附 4,4′-二巯基偶氮苯(DMAB)时,会产生二聚反应。这种 SERS 分析是在 10-4 M 的 PATP 浓度下进行的,并且在所有情况下都使用了两种不同的激光波长(532 和 785 nm)。在这种情况下,只有在双金属结构和 532 nm 激光波长下,我们才能检测到 PATP 与 DMAB 的二聚反应。此外,我们还发现二聚能力还取决于纳米粒子的形态。
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引用次数: 0
Quantitative analysis model based on surface-enhanced Raman spectroscopy of malachite green adsorbed on gold nanoparticles film substrates 基于表面增强拉曼光谱的孔雀石绿吸附在金纳米颗粒薄膜基底上的定量分析模型
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-10 DOI: 10.1002/jrs.6678
Hui-Mei Huang, Yu-Bei Zhang, Ting-Wei Weng, He-Tian Qiao, Xiao-Tian Yuan, Zubia Sajid, De-Yin Wu, Zhong-Qun Tian

In order to investigate the adsorption process of malachite green (MG) on gold nanoparticles, a simple gold nanoparticles-assembled film was prepared as a substrate of surface-enhanced Raman spectroscopy (SERS), and it was soaked in MG solutions of different concentrations. The kinetic adsorption process was investigated by SERS method and density functional theoretical calculations. When saturated adsorption was achieved, the relationship between the characteristic SERS band signal intensity and the logarithm of solution concentration of MG was consistent with Temkin adsorption isotherm model, where the R2 value was greater than 0.995, and the linear range was 1 × 10−3–1 × 10−7 M. Finally, a SERS quantitative analysis model of the relationship between the adsorption properties of surface species and the bulk concentration was established. According to the electrostatic interaction and co-adsorption, we proposed the surface adsorption configurations and adsorption process of MG on the nanostructured gold films.

为了研究孔雀石绿(MG)在金纳米粒子上的吸附过程,制备了简单的金纳米粒子组装膜作为表面增强拉曼光谱(SERS)的基底,并将其浸泡在不同浓度的孔雀石绿溶液中。利用 SERS 方法和密度泛函理论计算研究了动力学吸附过程。当达到饱和吸附时,特征 SERS 波段信号强度与 MG 溶液浓度对数之间的关系符合 Temkin 吸附等温线模型,R2 值大于 0.995,线性范围为 1 × 10-3-1 × 10-7 M。根据静电作用和共吸附作用,提出了 MG 在纳米结构金薄膜上的表面吸附构型和吸附过程。
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引用次数: 0
Dual coherent anti-Stokes Raman scattering microscopy across the vibrational spectrum enabled by single pump optically synchronised oscillators and spectral focusing 通过单泵光同步振荡器和光谱聚焦实现的跨振动光谱双相干反斯托克斯拉曼散射显微技术
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-09 DOI: 10.1002/jrs.6671
Dominykas Gudavičius, Lukas Kontenis, Wolfgang Langbein

Coherent anti-Stokes Raman scattering microscopy probing two independently selectable vibrational frequencies across the vibrational spectrum is demonstrated. A one-box femtosecond laser source provides three synchronised 100–200 fs pulses of 77 MHz repetition rate, one at a fixed wavelength of 1025 nm from an Yb oscillator and two independently tuneable ones, over 680–960 nm and 960–1300 nm, respectively, from two optically synchronised parametric oscillators. Combined with spectral focusing, the source allows addressing the fingerprint, cell silent and C–H stretch vibrational regions simultaneously, avoiding the motion artefacts seen in sequential imaging. We demonstrate the microscopy method on water/heavy water/oil emulsions, plastic beads and deuterated lipids inside cells.

演示了相干反斯托克斯拉曼散射显微镜,可探测整个振动光谱中两个独立可选的振动频率。一个单箱飞秒激光源提供三个同步的 100-200 fs 脉冲,重复频率为 77 MHz,其中一个来自掺镱振荡器,波长固定为 1025 nm,另两个来自两个光学同步参量振荡器,波长分别为 680-960 nm 和 960-1300 nm。结合光谱聚焦,该光源可同时处理指纹、细胞沉默和 C-H 伸展振动区域,避免了顺序成像中出现的运动伪影。我们在细胞内的水/重水/油乳液、塑料珠和氘化脂质上演示了这种显微镜方法。
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引用次数: 0
Raman spectroscopy, phase transitions, microstructures, and mechano-luminescence in Ca-Sr feldspars (CaAl2Si2O8-SrAl2Si2O8) 钙锶长石(CaAl2Si2O8-SrAl2Si2O8)中的拉曼光谱、相变、微结构和机械发光特性
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-08 DOI: 10.1002/jrs.6675
Nadia Curetti, Davide Bernasconi, Mario Tribaudino

The Raman spectra of Ca1-xSrxAl2Si2O8 (0 ≤ x ≤ 1) feldspars have been measured, to investigate at a short-range scale the effect of changing composition on the P 1¯ ➔ I 1¯ and I 1¯ ➔ I2/c phase transitions and how phase transitions affect the mechano-luminescence found in these feldspars. Transmission electron microscopy (TEM) and X-ray diffraction (XRD) were done on the same samples, to pinpoint the transitions, by the analysis of selected area diffraction patterns (SAED) and of the spontaneous strain. Natural anorthite (CaAl2Si2O8) shows a large number of well-resolved peaks, together with sharp h + k even, l odd diffractions (c-type) in SAED patterns, indicative of a P 1¯ symmetry. In synthetic anorthite, the Raman spectrum is similar to that of natural anorthite, but the peaks are broader, and c-type reflections are elongated. As Sr increases, the c-type reflections become more diffuse and elongated, as the Raman peaks do. At x > 0.6, new peaks appear in Raman spectra, and other peaks show a change in their wavenumber. Moreover, the c-type reflections disappear completely, and the lattice becomes I-centred. Between x ~ 0.6 and x = 0.86(3), the XRD patterns prompt for a triclinic structure, with S.G. I 1¯. The transition to the monoclinic I2/c structure is well constrained by the ferroelastic strain, whereas the Raman spectra are more similar between the monoclinic and triclinic I 1¯ and I2/c than between I 1¯ and P 1¯. The absence of mechano-luminescence in triclinic I 1¯ compositions suggests that this property is enhanced in local P
测量了 Ca1-xSrxAl2Si2O8 (0 ≤ x ≤ 1) 长石的拉曼光谱,以便在短程尺度上研究成分变化对 P ➔ I 和 I ➔ I2/c 相转变的影响,以及相转变如何影响这些长石中的机械发光。对相同的样品进行了透射电子显微镜(TEM)和 X 射线衍射(XRD)检查,通过对选定区域衍射图样(SAED)和自发应变的分析来确定相变。天然正长石(CaAl2Si2O8)在 SAED 图样中显示出大量分辨良好的峰值,以及尖锐的 h + k 偶数、l 奇数衍射(c 型),表明其具有 P 对称性。在合成正长岩中,拉曼光谱与天然正长岩相似,但峰值更宽,且 c 型反射被拉长。随着锶的增加,c 型反射变得更加弥散和拉长,拉曼光谱峰也是如此。在 x > 0.6 时,拉曼光谱中出现了新的峰值,其他峰值的波长也发生了变化。此外,c 型反射完全消失,晶格变成以 I 为中心。在 x ~ 0.6 和 x = 0.86(3)之间,XRD 图谱显示出 S.G. I 的三菱结构。向单斜 I2/c 结构的转变受到铁弹性应变的良好约束,而拉曼光谱在单斜 I 和三斜 I 以及 I2/c 之间比在 I 和 P 之间更为相似。三linic I 成分中没有机械发光,这表明在接近 P 到 I 转变的条件下,这种特性在局部 P 构型中得到了增强。本文提出了机械发光的一种可能机制,即在局部含 Eu2+ 的 P 构型中,由压缩诱导 P 到 I 的转变。
{"title":"Raman spectroscopy, phase transitions, microstructures, and mechano-luminescence in Ca-Sr feldspars (CaAl2Si2O8-SrAl2Si2O8)","authors":"Nadia Curetti,&nbsp;Davide Bernasconi,&nbsp;Mario Tribaudino","doi":"10.1002/jrs.6675","DOIUrl":"10.1002/jrs.6675","url":null,"abstract":"<p>The Raman spectra of Ca<sub>1-x</sub>Sr<sub>x</sub>Al<sub>2</sub>Si<sub>2</sub>O<sub>8</sub> (0 ≤ x ≤ 1) feldspars have been measured, to investigate at a short-range scale the effect of changing composition on the <i>P</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math> ➔ <i>I</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math> and <i>I</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math> ➔ <i>I</i>2/<i>c</i> phase transitions and how phase transitions affect the mechano-luminescence found in these feldspars. Transmission electron microscopy (TEM) and X-ray diffraction (XRD) were done on the same samples, to pinpoint the transitions, by the analysis of selected area diffraction patterns (SAED) and of the spontaneous strain. Natural anorthite (CaAl<sub>2</sub>Si<sub>2</sub>O<sub>8</sub>) shows a large number of well-resolved peaks, together with sharp h + k even, l odd diffractions (<i>c</i>-type) in SAED patterns, indicative of a <i>P</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math> symmetry. In synthetic anorthite, the Raman spectrum is similar to that of natural anorthite, but the peaks are broader, and c-type reflections are elongated. As Sr increases, the <i>c</i>-type reflections become more diffuse and elongated, as the Raman peaks do. At x &gt; 0.6, new peaks appear in Raman spectra, and other peaks show a change in their wavenumber. Moreover, the <i>c</i>-type reflections disappear completely, and the lattice becomes <i>I</i>-centred. Between x ~ 0.6 and x = 0.86(3), the XRD patterns prompt for a triclinic structure, with S.G. <i>I</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math>. The transition to the monoclinic <i>I</i>2/<i>c</i> structure is well constrained by the ferroelastic strain, whereas the Raman spectra are more similar between the monoclinic and triclinic <i>I</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math> and <i>I</i>2/<i>c</i> than between <i>I</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math> and <i>P</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math>. The absence of mechano-luminescence in triclinic <i>I</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn>1</mn>\u0000 <mo>¯</mo>\u0000 </mover></math> compositions suggests that this property is enhanced in local <i>P</i>\u0000 <span></span><math>\u0000 <mover>\u0000 <mn","PeriodicalId":16926,"journal":{"name":"Journal of Raman Spectroscopy","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140942436","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Raman spectroscopy-based molecularly imprinted polymer sensor for sensitive detection of lysophosphatidic acid in serum 基于拉曼光谱的分子印迹聚合物传感器用于灵敏检测血清中的溶血磷脂酸
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-08 DOI: 10.1002/jrs.6673
Nazia Tarannum, Deepak Kumar, Akanksha Yadav, Anil K. Yadav

Lysophosphatidic acid (LPA) has significant potential as a biomarker for diagnosis of ovarian cancer in female patients because it is present throughout all phases of the illness. Regrettably, there is not a clinically useful test for this biomarker yet. In this work, an ultra-detection of LPA molecule by Raman spectroscopy-based molecularly imprinted polymer (MIP) in serum samples is reported. β-CD was synthesized to facilitate the collection of Raman spectroscopy and combined with MIP to denote it as β-CD-MIP for the adsorption of LPA with high sensitivity and selectivity. Linear regression model in serum samples shows peaks at 1100 and 1116 cm−1, respectively. A satisfactory linear fit was seen with LPA concentration log I = 3.7 log C + 1255.74 and with spiked serum log I = 4.6 log C + 327.22, respectively. The literature survey suggests the threshold LPA level in healthy person is 1.50 μM/L whereas the LPA level rises in patients with benign ovarian cancer tumor as 7.90 μM/L. This LPA level rises to 16.99 μM/L in ovarian cancer patients. On the basis of the band intensity, the limit of detection of the β-CD-MIP sensor for LPA was recorded as 0.003 μM/L. The binding constant of β-CD-MIP for LPA in serum was 0.031–0.003 μM/L, respectively. β-CD-MIP gel was optimized, characterized, and successfully applied on spiked serum samples. The findings of this research show that this substrate has a lot of potential for ultradetection of trace amounts of LPA molecule from the serum samples. The MIP sensor is robust, recyclable, efficient, and selective.

溶血磷脂酸(LPA)作为诊断女性卵巢癌的生物标志物具有很大的潜力,因为它存在于疾病的所有阶段。遗憾的是,目前还没有一种对临床有用的检测方法。本研究报告采用基于拉曼光谱的分子印迹聚合物(MIP)对血清样本中的 LPA 分子进行了超检测。为了方便拉曼光谱的采集,我们合成了β-CD,并将其与 MIP 结合,命名为β-CD-MIP,用于高灵敏度和高选择性地吸附 LPA。血清样品中的线性回归模型分别在 1100 和 1116 cm-1 处显示了峰值。在 LPA 浓度 log I = 3.7 log C + 1255.74 和加标血清 log I = 4.6 log C + 327.22 的情况下,线性拟合效果令人满意。文献调查表明,健康人的 LPA 临界值为 1.50 μM/L,而良性卵巢癌患者的 LPA 水平则升至 7.90 μM/L。卵巢癌患者的 LPA 水平升至 16.99 μM/L。根据条带强度,β-CD-MIP 传感器对 LPA 的检测限为 0.003 μM/L。血清中 β-CD-MIP 与 LPA 的结合常数分别为 0.031-0.003 μM/L。对 β-CD-MIP 凝胶进行了优化和表征,并成功地应用于加标血清样品。研究结果表明,这种底物在超声检测血清样品中痕量 LPA 分子方面具有很大的潜力。MIP 传感器坚固耐用、可回收、高效且具有选择性。
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引用次数: 0
A comprehensive analysis of metabolomics and lipidomics in areca nut mediated oral submucous fibrosis progression through LCMS and Raman spectroscopy 通过液相色谱法和拉曼光谱法全面分析山苍子介导的口腔黏膜下纤维化过程中的代谢组学和脂质组学研究
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-07 DOI: 10.1002/jrs.6679
Tarun Prakash Verma, Sonali Adhikari, Siddharth Singh, Chanchal Rani, Rajesh Kumar, Hem Chandra Jha

Habitual consumption of areca/betel nut in Southeast Asia has been associated with oral submucous fibrosis (OSMF) and its malignant transformation to oral squamous cell carcinoma. The current study aimed to assess the molecular alterations in fibroblast cell lines after treatment with areca nut. Areca nut extract (ANE) was prepared and characterized for its active ingredient, arecoline. ANE-treated cells were subjected to cell viability, proliferation, migration, morphologic changes, and transcript of OSMF genes (col1a1, col1a2, hsp47, timp1, timp2, timp3, and timp4). Further, liquid chromatography–mass spectrometry (LCMS) of cell lysate and Raman microspectroscopy (RMS) of fixed cells were performed for metabolomics/lipidomics and biomolecular alterations in the nucleus and periphery of ANE-treated cells. We compared and integrated the data from both techniques and observed that the cells treated with ANE mimicked OSMF and could be used as an in vitro model. LCMS showed a significant alteration in 17 metabolites and 165 lipid molecules in the cells treated with ANE. Further, 40 molecules in the nucleus and 29 in the periphery were found to be altered in these cells when subjected to RMS. Molecules associated with pathways such as the transfer of acetyl groups into mitochondria, amino sugar metabolism, and the Warburg effect were modulated the most upon ANE treatment. Acetyl CoA was found to be common in most of the altered pathways. Besides, the pathways affecting carbohydrate metabolism were also altered significantly. Targeting these molecules and pathways can help to prevent the malignant transformation of OSMF.

在东南亚,习惯性食用山苍子/槟榔与口腔黏膜下纤维化(OSMF)及其向口腔鳞状细胞癌的恶性转化有关。本研究旨在评估使用亚麻仁治疗后成纤维细胞系的分子变化。研究人员制备了亚麻仁提取物(ANE),并对其活性成分亚麻仁碱进行了表征。对经 ANE 处理的细胞进行了细胞活力、增殖、迁移、形态变化和 OSMF 基因(col1a1、col1a2、hsp47、timp1、timp2、timp3 和 timp4)转录本检测。此外,我们还对细胞裂解液进行了液相色谱-质谱联用(LCMS),并对固定细胞进行了拉曼显微光谱分析(RMS),以了解代谢组学/脂质组学以及经 ANE 处理的细胞核和外围的生物分子变化。我们对这两种技术的数据进行了比较和整合,发现用 ANE 处理的细胞模拟了 OSMF,可用作体外模型。LCMS 显示,经 ANE 处理的细胞中有 17 种代谢物和 165 种脂质分子发生了显著变化。此外,这些细胞在接受 RMS 处理时,发现细胞核中的 40 个分子和细胞外围的 29 个分子发生了变化。与乙酰基转移到线粒体、氨基糖代谢和沃伯格效应等途径相关的分子在 ANE 处理后受到的改变最大。研究发现,乙酰辅酶A(Acetyl CoA)在大多数改变的途径中都很常见。此外,影响碳水化合物代谢的途径也发生了显著变化。针对这些分子和途径的研究有助于防止 OSMF 的恶性转化。
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引用次数: 0
The pH effects on thermal amyloid fibrillation kinetics of hen egg-white lysozyme using new normalization factor for Raman spectroscopy 使用新的拉曼光谱归一化因子研究pH值对母鸡蛋清溶菌酶热淀粉样纤维化动力学的影响
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-05-01 DOI: 10.1002/jrs.6674
Dongxiao Liu, Ning Chen, Tianle Zhang, Xiaoguo Zhou, Shilin Liu

Amyloid fibrillation kinetics of proteins associated with neurodegenerative diseases has been extensively studied using Raman spectroscopy. The normalization factor for the spectra is crucial for obtaining correct kinetics of Raman indicators, especially vibrational band intensities. Here, we compared the concentration dependences between the absorption at 280 nm in UV–vis spectroscopy and the phenylalanine (Phe) Raman band intensity at 1003 cm−1 in amyloid fibrillation kinetics of lysozyme. The former exhibits better performance as normalization factor. Using this new normalization factor, the effect of pH value on the transformation of hen egg-white lysozyme (HEWL) tertiary and secondary structures was studied subsequently. With increasing acidity, the unfolding of tertiary structures and the transformation of secondary structures are significantly accelerated. Notably, the populations of various secondary structures in the final state remain in the pH < 2.0 solutions, indicating that the branching ratios of “on-pathway” to amyloid fibrils and “off-pathway” to gel-like aggregates are independent on the pH value in the range of 1.1–1.9.

人们利用拉曼光谱对与神经退行性疾病相关的蛋白质的淀粉样纤维化动力学进行了广泛研究。光谱的归一化因子对于获得正确的拉曼动力学指标,尤其是振带强度至关重要。在此,我们比较了溶菌酶淀粉样纤维化动力学中紫外可见光谱 280 纳米处的吸收与 1003 cm-1 处苯丙氨酸(Phe)拉曼光谱带强度之间的浓度相关性。前者作为归一化因子表现出更好的性能。利用这一新的归一化因子,随后研究了 pH 值对母鸡卵白溶菌酶(HEWL)三级和二级结构转化的影响。随着酸度的增加,三级结构的展开和二级结构的转化明显加快。值得注意的是,最终状态下各种二级结构的数量仍保持在 pH 值为 2.0 的溶液中,这表明在 1.1-1.9 的范围内,"通路 "上的淀粉样纤维和 "非通路 "上的凝胶状聚集体的分支比例与 pH 值无关。
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引用次数: 0
π-π stacking interactions mediate molecular recognition between arginine and tryptophan containing peptides derived from human islet polypeptide π-π堆积相互作用介导了源自人类胰岛多肽的含精氨酸和色氨酸肽之间的分子识别
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-04-28 DOI: 10.1002/jrs.6672
J. Vedad, M. Bilog, A. Chamorro, A. A. Profit, R. Z. B. Desamero

Cation-π interactions, often found in protein assemblies, are characterized by favorable electrostatic interactions between an aromatic π-electron surface and a positively charged species. There are evidences that reveal the importance of cation-π interactions between arginine and aromatic residues in protein structure and function. In this paper, the effect of cation-π interactions on the aggregation propensity of peptides derived from human islet polypeptide (hIAPP) was explored using UV resonance Raman and fluorescence spectroscopy. By employing an analog of hIAPP22–29 in which Phe-23 is replaced with tryptophan (NWGAILSS), we were able to demonstrate an increase in the amyloidogenic propensity of this mutant in the presence of Zn2+ that is attributable to cation-π interactions. In contrast, no cation-π interactions were observed when the cationic F23R analog of hIAPP22–29 (NRGAILSS) was allowed to interact with NWGAILSS. From these observations, it was surmised that in these peptides, the dominant interaction between arginine and tryptophan involves the π-cloud of the guanidino group and the indole ring, not cation-π interactions. The spectroscopic data, supported by density functional theory-based simulation results, suggest that arginine-tryptophan interaction involves π-π stacking where the guanidino group is oriented parallel to the indole ring. These hydrophobic interactions, coupled with the hydrotropic effect of the guanidine functionality of arginine, led to a delay in the aggregation kinetics of NWGAILSS. These unique interactions were further exploited to design a peptide inhibitor of full-length amylin self-assembly.

阳离子-π相互作用经常出现在蛋白质组装中,其特点是芳香族π电子表面与带正电的物种之间的有利静电相互作用。有证据表明,精氨酸和芳香残基之间的阳离子-π相互作用在蛋白质结构和功能中的重要性。本文利用紫外共振拉曼光谱和荧光光谱,探讨了阳离子-π相互作用对源自人胰岛多肽(hIAPP)的多肽聚集倾向的影响。通过使用一种将 Phe-23 替换为色氨酸的 hIAPP22-29 类似物(NWGAILSS),我们能够证明这种突变体在 Zn2+ 存在下的淀粉样蛋白生成倾向会增加,而这可归因于阳离子-π 的相互作用。与此相反,当允许 hIAPP22-29 的阳离子 F23R 类似物(NRGAILSS)与 NWGAILSS 相互作用时,没有观察到阳离子-π 相互作用。根据这些观察结果推测,在这些肽中,精氨酸和色氨酸之间的主要相互作用涉及胍基和吲哚环的π云,而不是阳离子-π相互作用。光谱数据以及基于密度泛函理论的模拟结果表明,精氨酸与色氨酸的相互作用涉及π-π堆积,其中胍基的方向与吲哚环平行。这些疏水相互作用,加上精氨酸的胍基官能团的亲水效应,导致了 NWGAILSS 的聚集动力学延迟。我们进一步利用这些独特的相互作用设计了一种全长淀粉蛋白自组装肽抑制剂。
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引用次数: 0
Effect of XC functionals and dispersion corrections on the DFT-computed structural and vibrational properties of SrCl2–NaCl and ZrF4–LiF XC 函数和分散修正对 SrCl2-NaCl 和 ZrF4-LiF 的 DFT 计算结构和振动特性的影响
IF 2.4 3区 化学 Q2 SPECTROSCOPY Pub Date : 2024-04-10 DOI: 10.1002/jrs.6670
Amir M. Mofrad, Matthew S. Christian, Juliano Schorne-Pinto, Jorge P. S. Palma, Theodore M. Besmann

Density functional theory (DFT) calculations were performed to examine the impact of exchange–correlation (XC) functionals and van der Waals corrections (specifically the D3 method) on the structural and vibrational properties of the SrCl2–NaCl and ZrF4–LiF salt systems. Multiple XC functionals, including the local density approximation (LDA), the generalized gradient approximation using the Perdew–Burke–Ernzerhof (PBE) model, and its modified form suitable for solids (PBEsol), the dispersion-corrected PBE-D3 and PBEsol-D3, were considered. Of these functionals, LDA was found to exhibit the highest degree of error, while PBEsol and PBE-D3 displayed the least error. Underestimated lattice parameters compared with experimental values were observed to result in higher force constants, leading to an overprediction of vibrational frequencies. Conversely, an overestimation of lattice parameters was associated with lower vibrational frequencies. The methodology presented in this study yielded results that are in good agreement with experiment, irrespective of the method (finite differences vs. density functional perturbation theory) employed for calculating infrared and Raman spectra. It was further demonstrated that for alkali halides with weak Raman scattering, utilizing a supercell constructed from primitive cells better predicts Raman features than does the use of conventional cells.

密度泛函理论(DFT)计算旨在研究交换相关(XC)函数和范德华修正(特别是 D3 方法)对 SrCl2-NaCl 和 ZrF4-LiF 盐体系的结构和振动特性的影响。研究考虑了多种 XC 函数,包括局部密度近似(LDA)、使用 Perdew-Burke-Ernzerhof (PBE) 模型的广义梯度近似及其适用于固体的修正形式(PBEsol)、弥散校正 PBE-D3 和 PBEsol-D3。在这些函数中,LDA 的误差最大,而 PBEsol 和 PBE-D3 的误差最小。与实验值相比,低估晶格参数会导致较高的力常数,从而导致对振动频率的过高预测。相反,高估晶格参数则会降低振动频率。无论采用哪种方法(有限差分与密度泛函扰动理论)计算红外光谱和拉曼光谱,本研究提出的方法得出的结果都与实验结果十分吻合。研究进一步证明,对于具有弱拉曼散射的碱卤化物,使用由原始晶胞构建的超级晶胞比使用传统晶胞能更好地预测拉曼特征。
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引用次数: 0
期刊
Journal of Raman Spectroscopy
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