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Plant Hormone Cytokinin as Aggregation Modulator of Gelsolin Amyloidosis 植物激素细胞分裂素作为凝胶淀粉样变性的聚集调节剂
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-15 DOI: 10.1002/psc.70057
Dev Seneviratne, Naomi Stock, Tyra Lewis, R. J. Neil Emery, Sanela Martic

Amyloidosis, a self-assembly of proteins or peptides, is associated with numerous degenerative diseases, such as gelsolin amyloidosis, which remain without a cure. Gelsolin protein is an actin-binding protein, but when aggregated in a diseased state, it is a potential drug target. Specifically, gelsolin mutations, N184K and D187Y, have been linked to renal amyloidosis and systemic progressive deposition of amyloids, respectively. Understanding how such mutations mitigate gelsolin aggregation and how this process can be prevented through small molecule inhibitors is of interest. Herein, we explored the efficacies of plant-based naturally occurring cytokinin (CK) molecules as aggregation modulators in vitro. Using various biophysical methods, such as spectroscopy and microscopy, the aggregation of wild-type gelsolin peptide 184NNGDCFILDL193 and its mutants (N184K, D187Y) was investigated. The mutations significantly promoted aggregation, which is of biological significance. The CK trans-zeatin (tZ) was a more effective disaggregation promoter compared with kinetin (Kin). The experimentally determined IC50 values were in the 9–20 μM range. The mode of inhibition was identified as direct non-covalent complexation between the CK and the peptides by using mass spectrometry and molecular docking studies. Data show that CKs are promising amyloid modulators, which can be easily translatable to other amyloid systems.

淀粉样变性是一种蛋白质或多肽的自组装,与许多退行性疾病有关,如凝胶淀粉样变性,这种疾病至今仍无法治愈。凝胶蛋白是一种肌动蛋白结合蛋白,但当它在病变状态下聚集时,它是一个潜在的药物靶点。具体来说,凝胶蛋白突变N184K和D187Y分别与肾脏淀粉样变性和系统性淀粉样蛋白进行性沉积有关。了解这些突变如何减轻凝胶聚集,以及如何通过小分子抑制剂阻止这一过程,是我们感兴趣的。在此,我们探索了植物基天然存在的细胞分裂素(CK)分子作为体外聚集调节剂的功效。利用光谱学和显微镜等多种生物物理方法,研究了野生型凝胶肽184NNGDCFILDL193及其突变体N184K、D187Y的聚集性。突变显著促进聚集,具有生物学意义。CK反式玉米蛋白(tZ)是比动蛋白(Kin)更有效的解聚启动子。实验测定的IC50值在9 ~ 20 μM范围内。通过质谱分析和分子对接研究,确定了CK与肽之间的直接非共价络合抑制模式。数据显示,ck是很有前途的淀粉样蛋白调节剂,它可以很容易地转化为其他淀粉样蛋白系统。
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引用次数: 0
Discovery of a Thrombin-Targeting Anticoagulant Peptide From Whitmania pigra via a “Computation-Guided Experimentation” Strategy 通过“计算导向的实验”策略发现一种针对凝血酶的抗凝肽
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-08 DOI: 10.1002/psc.70056
Yu-Tong Hua, Rui-Juan Dong, Yin Li, Zhao-Yu-Qing Su, Quan-Cheng Xin, Meng Shen, Ya-Xiong Liu, Xiu-Huan Guo, Yan Lei, Yu-Ting Zhang, Gai-Mei She, Peng Wei, Rui-Juan Yuan

Targeting thrombin to screen safe thrombin inhibitors from natural plants and animals is a critical direction in anticoagulant drug development. This study aimed to screen thrombin inhibitors from the nonbloodsucking leech Whitmania pigra (WP) and elucidate the mechanism of anticoagulation through a “computation-guided experimentation” strategy. A peptide library was constructed from WP hydrolysates, and virtual screening was performed using molecular docking and dynamics simulations. A novel thrombin-targeting anticoagulant peptide PEPWP (LRELEDALEQER) was screened out from the peptide library and validated through in vitro/in vivo experiments. PEPWP significantly prolonged thrombin time (TT) and prothrombin time (PT) in a dose-dependent manner in vitro, indicating its role in the common and extrinsic coagulation pathways. Surface plasmon resonance (SPR) analysis then confirmed strong thrombin binding (Kd = 7.242 × 10−6 mol/L). Furthermore, PEPWP prolonged TT while reducing blood viscosity in acute blood stasis rats. Finally, structural analysis revealed that PEPWP bound to Exosite II of thrombin. Arg233 and Arg101 were the key residues for the binding. In conclusion, PEPWP exhibited good anticoagulant activity and significant application potential.

以凝血酶为靶点,从天然动植物中筛选安全的凝血酶抑制剂是抗凝药物开发的一个重要方向。本研究旨在筛选非吸血水蛭Whitmania pigra (WP)的凝血酶抑制剂,并通过“计算引导实验”策略阐明抗凝机制。利用水解液构建肽库,通过分子对接和动力学模拟进行虚拟筛选。从肽库中筛选出一种新的靶向凝血酶的抗凝肽PEPWP (LRELEDALEQER),并通过体外/体内实验进行验证。在体外实验中,PEPWP显著延长凝血酶时间(TT)和凝血酶原时间(PT),且呈剂量依赖性,表明其在常见和外源性凝血途径中的作用。表面等离子体共振(SPR)分析证实凝血酶结合较强(Kd = 7.242 × 10−6 mol/L)。此外,PEPWP在降低急性血瘀大鼠血黏度的同时延长了TT时间。最后,结构分析表明PEPWP与凝血酶的Exosite II结合。Arg233和Arg101是结合的关键残基。结果表明,PEPWP具有良好的抗凝血活性,具有较大的应用潜力。
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引用次数: 0
Amphipathic Octenyl-Alanine Modified Peptides Mediate Effective siRNA Delivery 两亲性辛烯基丙氨酸修饰肽介导siRNA的有效传递
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-07 DOI: 10.1002/psc.70054
Tõnis Lehto, Marit Isakannu, Helena Sork, Annely Lorents, Safa Bazaz, Oscar P. B. Wiklander, Samir EL Andaloussi, Taavi Lehto

The development of therapeutic small interfering RNAs (siRNAs) has lately gained significant momentum due to their ability to silence genes in a highly specific manner. The main obstacle withholding the wider translation of siRNA-based drug modalities is their limited half-life and poor bioavailability, especially in extra-hepatic tissues. Consequently, various drug delivery systems (DDSs) have been developed to improve the delivery of siRNAs, including short delivery peptides called cell-penetrating peptides (CPPs). In this study, we explore the potential of using alkenyl-alanine modifications to enhance the siRNA delivery efficacy with CPPs. We demonstrate on hPep peptides that incorporation of alkenyl-alanines enhances the encapsulation of siRNAs into stable nanoparticles and contributes to increased cellular uptake. Furthermore, we demonstrate that the lead peptide, hPep3, induces effective RNAi-mediated gene silencing in a reporter cell model as well as on the disease-implicated endogenous CD45 gene target. The biodistribution studies in mice show that the alkenyl-alanines are systemically well tolerated, and employing such modifications in the peptide backbone improves siRNA delivery in several tissues, including extra-hepatic sites. As demonstrated on hPep peptides, alkenyl-alanines offer a simple yet robust way to enhance the delivery efficacy of CPPs and have the potential to advance siRNA therapeutics beyond the liver targets.

治疗性小干扰rna (sirna)由于能够以高度特异性的方式沉默基因,最近获得了显著的发展势头。阻碍基于sirna的药物模式广泛翻译的主要障碍是它们有限的半衰期和较差的生物利用度,特别是在肝外组织中。因此,已经开发了各种药物递送系统(dds)来改善sirna的递送,包括称为细胞穿透肽(CPPs)的短递送肽。在这项研究中,我们探索了使用烯丙氨酸修饰来增强CPPs siRNA递送效率的潜力。我们在hPep多肽上证明,烯基丙氨酸的结合增强了sirna被包裹成稳定的纳米颗粒,并有助于增加细胞摄取。此外,我们证明了先导肽hPep3在报告细胞模型以及与疾病相关的内源性CD45基因靶点上诱导了rnai介导的有效基因沉默。小鼠的生物分布研究表明,烯丙氨酸具有良好的全身耐受性,并且在肽主链中使用这种修饰可以改善siRNA在几种组织中的传递,包括肝外部位。正如在hPep多肽上所证明的那样,烯丙氨酸提供了一种简单而有效的方法来提高CPPs的递送效率,并有可能将siRNA治疗方法推进到肝脏靶点之外。
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引用次数: 0
Leveraging the Therapeutic Potential of Natural Peptide Panurgines: Hydrocarbon Stapling Strategy Enhances Their Efficacy Against Breast Cancer 利用天然多肽Panurgines的治疗潜力:碳氢化合物钉接策略增强其对乳腺癌的疗效
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-31 DOI: 10.1002/psc.70047
Zhongzhong Peng, Lei Chen, Xianyuan Miao, Qiongqiong Wang, Shuyue Fu, Xikai Zhang, Xiao Zhou, Sijia Ren, Yehua Lao, Yinghua Li, Kaifeng Wang, Shipeng He

The development of novel candidate molecules for breast cancer treatment holds significant clinical value. Panurgines (PNG), derived from the venom of the wild bee Panurgus calcaratus, are particularly noteworthy for their anti-breast cancer activity and antibacterial properties. However, linear peptides are often hindered by poor stability and limited cell membrane permeability, making them highly susceptible to protease degradation. To tackle this challenge, the current study focused on synthesizing a range of stapled Panurgines peptides through hydrocarbon stapling modifications, followed by a comprehensive evaluation of their chemical and biological properties. Remarkably, PNG-5 demonstrated notable improvements in helicity, cell membrane permeability, proteolytic stability, and antitumor activity. This study examines how the hydrocarbon stapling technique significantly affects the secondary structure, hydrolase stability, and biological activity of PNG, revealing its potential as a transformative and powerful anti-breast cancer therapeutic. These findings lay a strong foundation for the development of innovative and highly effective peptide-based anti-tumor drugs.

开发新的候选分子治疗乳腺癌具有重要的临床价值。Panurgines (PNG)是从野生蜜蜂Panurgus calcaratus的毒液中提取的,因其抗乳腺癌活性和抗菌特性而特别值得注意。然而,线性肽往往受到稳定性差和有限的细胞膜渗透性的阻碍,使它们极易受到蛋白酶降解的影响。为了解决这一挑战,目前的研究重点是通过碳氢化合物的钉接改性合成一系列钉接的Panurgines肽,然后对它们的化学和生物学特性进行综合评价。值得注意的是,PNG-5在螺旋度、细胞膜通透性、蛋白水解稳定性和抗肿瘤活性方面表现出显著改善。本研究考察了碳氢化合物钉接技术如何显著影响PNG的二级结构、水解酶稳定性和生物活性,揭示了其作为一种变革性和强大的抗乳腺癌治疗药物的潜力。这些发现为开发创新高效的肽类抗肿瘤药物奠定了坚实的基础。
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引用次数: 0
DiPTH-Cystine and PTH-Cysteine in Disulfide Bond Analysis Using Automated Edman Degradation 二硫键分析中pth -半胱氨酸和pth -半胱氨酸的自动Edman降解
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-29 DOI: 10.1002/psc.70053
Toni Kühl, Yomnah Y. Elsayed, Alexander Terekhov, Diana Imhof

The annotation of disulfide bridges in peptides and proteins can be an elaborate process and requires careful revision of multiple data sets to avoid wrong assignment in the structural analysis. Herein, we provide additional support to elucidate the cysteine connectivity by re-implementation of Edman sequencing for the analysis of this specific structural feature. By synthesizing diPTH-cystine and PTH-cysteine for comparison, we were able to identify the respective derivative during Edman sequencing when a disulfide bond is detected in a peptide. Application of Edman sequencing to selected peptides with two or three disulfide bridges provides further insight into the differentiation of cysteines that form a disulfide bridge for both half-cystines in the same cycle and in separated cycles. A combined approach for the implementation of automated Edman sequencing in the process of disulfide bond assignment is described to alleviate structural elucidation in the future analysis of cysteine-rich peptides and proteins.

多肽和蛋白质中二硫桥的注释可能是一个复杂的过程,需要仔细修改多个数据集,以避免结构分析中的错误分配。在此,我们通过重新实施Edman测序来分析这一特定的结构特征,为阐明半胱氨酸连通性提供了额外的支持。通过合成pth -半胱氨酸和pth -半胱氨酸进行比较,当在肽中检测到二硫键时,我们能够在Edman测序中识别各自的衍生物。将Edman测序应用于具有两个或三个二硫桥的选定肽,可以进一步了解半胱氨酸在同一循环和不同循环中形成二硫桥的半胱氨酸的分化。描述了在二硫键分配过程中实现自动Edman测序的组合方法,以减轻未来分析富含半胱氨酸的肽和蛋白质的结构阐明。
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引用次数: 0
Discovery of Antioxidant Peptide Against Keap1 From Silkworm Protein Based on In Silico Study and In Vitro Antioxidant Activity Detection 家蚕蛋白抗Keap1抗氧化肽的硅研究及体外抗氧化活性检测
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-16 DOI: 10.1002/psc.70049
Shuoliang Ye, Mengyue Qi, Jianhua Wang, Qiuyi Zhang, Lan Fang, Yan Huo, Zhiyong Li

Nrf2-Keap1 is an important defense system against oxidative stress damage and enhances the body's antioxidant capacity. Targeting the Keap1-Nrf2 signaling pathway and activating Nrf2 has become an effective strategy for treating oxidative stress and related diseases. In this study, virtual digestion, ADMET prediction, and molecular docking were used to screen antioxidant peptide from silkworm pupa protein. Then, a novel tripeptide (WQK) was identified, exhibiting good water solubility, nontoxicity, high intestinal absorption, and the ability to cross the blood–brain barrier. Molecular docking showed that WQK established six H-bond interactions with some key sites of Keap1 (Arg380, Arg415, Gln530, Ser555, Ile416, and Leu365), which is similar to the identified antioxidant molecule 12e. Additionally, WQK has the function to reduce ABTS·+ and ferric-tripyridyltriazine (Fe3+-TPTZ) in vitro. Furthermore, WQK can promote the expression of antioxidant genes and eliminate reactive oxygen species (ROS) in oxalic acid-treated human proximal tubular epithelial cells (HK-2). The results suggested that WQK may activate the Keap1-Nrf2 signaling pathway by binding to Keap1 and activating the antioxidant system.

Nrf2-Keap1是抗氧化应激损伤的重要防御系统,增强机体抗氧化能力。靶向Keap1-Nrf2信号通路,激活Nrf2已成为治疗氧化应激及相关疾病的有效策略。本研究采用虚拟消化、ADMET预测、分子对接等方法从蚕蛹蛋白中筛选抗氧化肽。然后,鉴定出一种新的三肽(WQK),具有良好的水溶性,无毒,高肠道吸收和穿越血脑屏障的能力。分子对接表明,WQK与Keap1的一些关键位点(Arg380、Arg415、Gln530、Ser555、Ile416和Leu365)建立了6个氢键相互作用,与已鉴定的抗氧化分子12e相似。此外,WQK在体外还具有降低ABTS·+和铁-三吡啶基三嗪(Fe3+-TPTZ)的作用。此外,WQK可以促进草酸处理的人近端小管上皮细胞(HK-2)中抗氧化基因的表达,消除活性氧(ROS)。结果提示WQK可能通过与Keap1结合激活抗氧化系统激活Keap1- nrf2信号通路。
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引用次数: 0
Silica-Assisted Solid-Phase Peptide Synthesis (SiPPS) 硅辅助固相肽合成(SiPPS)
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-16 DOI: 10.1002/psc.70052
Nonsikelelo Nkwanyana, Ashish Kumar, Amit Chakraborty, Steeves Potvin, Georges Thibaut-Koumba, Brunello Nardone, Francois Beland, Anamika Sharma, Beatriz G. de la Torre, Fernando Albericio

Non-swelling silica-based resin was used for peptide synthesis. The strategy used is similar to that of solid-phase peptide synthesis (SPPS), referred to as silica-assisted solid-phase peptide synthesis (SiPPS). A 2-h coupling seemed to favor the coupling compared to that of 1-h standard coupling. The use of this non-swelling resin allows a 50% reduction in the consumption of solvents. The strategy was well demonstrated for the synthesis of H-YSSFL-NH2, linear oxytocin, angiotensin II, and afamelanotide using a silica-based support (Fmoc-Rink amide SiliaBond manufactured from SiliCycle Inc.). The peptides were found to have more than acceptable purity, although there was a loss in overall yields.

无膨胀硅基树脂用于多肽合成。所使用的策略类似于固相肽合成(SPPS),称为硅辅助固相肽合成(SiPPS)。与1-h标准耦合相比,2-h耦合似乎更有利于耦合。使用这种不膨胀树脂可以减少50%的溶剂消耗。该策略在硅基载体(硅循环公司生产的Fmoc-Rink amide SiliaBond)的H-YSSFL-NH2、线性催产素、血管紧张素II和afamelanotide的合成中得到了很好的证明。这些肽被发现具有比可接受的纯度更高的纯度,尽管总体产量有所下降。
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引用次数: 0
Interactions of Peptide Amphiphiles With Viruses and Cells Are Enabled by Amorphous Nanostructures 无定形纳米结构使肽两亲体与病毒和细胞的相互作用成为可能
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-15 DOI: 10.1002/psc.70051
Julia La Roche, Lena Rauch-Wirth, Laura Zimmerman, Fabian Zech, Jan Münch, Clarissa Read, Kübra Kaygisiz

Peptide amphiphiles can form fibrillar and amorphous structures. While fibrillar assemblies have previously been shown to enhance viral infectivity or retroviral transduction for gene delivery, we now elucidate the mechanism behind amorphous peptide amphiphiles that promote virus–cell interactions. Using electron microscopy, we reveal that amorphous fragments of polyunsaturated peptide amphiphiles allow for more VLPs to bind directly to the plasma membrane, explaining previously observed efficient viral entry and superior biodegradation compared to state-of-the-art adjuvants. We believe our work highlights the potential of unsaturated fatty acid peptide hybrid materials for clinical applications.

肽两亲体可以形成纤维状和无定形结构。虽然纤维组装先前已被证明可以增强病毒传染性或基因传递的逆转录病毒转导,但我们现在阐明了促进病毒-细胞相互作用的无定形肽两亲体背后的机制。通过电子显微镜,我们发现多不饱和肽两亲体的无定形片段允许更多的VLPs直接结合到质膜上,这解释了与最先进的佐剂相比,先前观察到的高效病毒进入和优越的生物降解。我们相信我们的工作突出了不饱和脂肪酸肽杂化材料在临床应用中的潜力。
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引用次数: 0
Assessment of Thermal and Photolytic Stress Effects on the Stability of Primary Structure of Synthetic Liraglutide Using LC-HRMS/MS 热、光解胁迫对合成利拉鲁肽一级结构稳定性的影响
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-15 DOI: 10.1002/psc.70050
Devendra Badgujar, Sanket Bawake, V. K. Yuvaraaj, Dilip Ghava, Nitish Sharma

Liraglutide (LGT), a synthetic glucagon-like peptide-1 (GLP-1) analogue, is widely used in the treatment of Type 2 diabetes and obesity. Due to its peptide-based nature, it is prone to degradation, particularly under improper storage or handling conditions. Environmental stressors, such as heat and light, can lead to the formation of impurities that may compromise the quality and safety of the drug. In this study, we have investigated the impact of thermal and photolytic stress on LGT stability using reverse-phase liquid chromatography coupled with high-resolution mass spectrometry (LC-HRMS). This method enabled the separation, identification, and characterization of intact LGT and its degradation products (DPs). Ten impurities were identified, including four DPs that have not been reported so far. Further, MS/MS fragmentation analysis was employed to elucidate the sequences of LGT and its impurities, pinpointing the modifications and their respective sites. The formation mechanisms of these impurities were also proposed, providing critical insights into the degradation pathways. This study offers a comprehensive analytical approach for assessing the stability of peptide drugs, contributing to enhanced quality control and safer pharmaceutical formulations.

利拉鲁肽(LGT)是一种合成胰高血糖素样肽-1 (GLP-1)类似物,广泛用于治疗2型糖尿病和肥胖症。由于其多肽的性质,它很容易降解,特别是在不适当的储存或处理条件下。环境压力因素,如热和光,会导致杂质的形成,从而影响药物的质量和安全性。在这项研究中,我们利用反相液相色谱-高分辨率质谱(LC-HRMS)研究了热和光解胁迫对LGT稳定性的影响。该方法能够分离、鉴定和表征完整的LGT及其降解产物(DPs)。鉴定出10种杂质,包括4种至今未报道的DPs。此外,利用MS/MS片段分析对LGT及其杂质的序列进行了解析,确定了修饰位点。还提出了这些杂质的形成机制,为降解途径提供了重要的见解。本研究为评价多肽药物的稳定性提供了一种全面的分析方法,有助于加强质量控制和更安全的药物配方。
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引用次数: 0
Modulation of Antimicrobial Activities of Aib-Based Artificial Amphipathic α-Helical Peptides by Incorporating Histidine Residues 组氨酸残基对aib型人工两性α-螺旋肽抗菌活性的调节作用
IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-07-29 DOI: 10.1002/psc.70046
Ami Koga, Manami Fuchinoue, Kiyohiko Seki, Kaoru Araki, Tomoichirou Kusumoto, Junichi Taira, Hiroaki Kodama, Satoshi Osada

Cationic antimicrobial peptides (CAMPs) exhibit potent antibacterial activity by disrupting bacterial membranes. We investigated the effect of histidine incorporation on BKBA-20, a designed amphiphilic helical peptide composed of alternating 2-aminoisobutyric acid (Aib) and lysine. Substitution at lysine sites (1a1e series) reduced net charge and antimicrobial activity, though certain analogues (1c, 1d) demonstrated minimal antibacterial activity against Escherichia coli. In contrast, substitution at Aib sites (2a2c series) preserved some extent of helical structure and improved activity under acidic conditions. Notably, substitutions at the terminal of the peptide were more effective at acidic pH, while the slightly medial side of the peptide favored activity at neutral pH. Hemolysis assays confirmed low cytotoxicity of the modified peptides. These results suggest histidine incorporation as a promising strategy to broaden the spectrum of CAMPs, particularly against Gram-negative bacteria, without increasing toxicity.

阳离子抗菌肽(camp)通过破坏细菌膜表现出强大的抗菌活性。我们研究了组氨酸掺入对BKBA-20的影响,BKBA-20是一种设计的由2-氨基异丁酸(Aib)和赖氨酸交替组成的两亲性螺旋肽。赖氨酸位点(1a-1e系列)的取代降低了净电荷和抗菌活性,尽管某些类似物(1c, 1d)对大肠杆菌的抗菌活性最小。相比之下,Aib位点(2a-2c系列)的取代保留了一定程度的螺旋结构,并提高了酸性条件下的活性。值得注意的是,肽末端的取代在酸性pH下更有效,而肽的稍微内侧在中性pH下更有活性。溶血实验证实了修饰肽的低细胞毒性。这些结果表明,组氨酸掺入是一种有希望的策略,可以扩大camp的光谱,特别是针对革兰氏阴性菌,而不会增加毒性。
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引用次数: 0
期刊
Journal of Peptide Science
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