Cajanus cajan, commonly known as Arhar or tur in India, is a highly treasured plant species belonging to the Fabaceae family. Pigeonpea is a drought-tolerant legume crop produced in the world's tropics and subtropics areas, rich source of protein, carbohydrates, fiber, and minerals. It is considered as “meat for vegetarian people” and addresses malnutrition issues globally. Despite its nutritional and economic importance, the lack of comprehensive knowledge about its genomic resources prevents it from being used wisely through molecular breeding programs and biotechnological intervention. Several genomic repositories on pigeonpea are available; however, there is no cohesive integrated multi-omics database available for C. cajan. Here, we present a first report on comprehensive pigeonpea omics database, named as Ppomics database (db) available at https://ppomics.multiwebx.com/, which provides up-to-date various aspects of multi-omics information devoted to the catalogs phenomics (both qualitative and quantitative), genomics, transcriptomics, and proteomics data. Ppomics db is an integrated multi-omics platform for discovering important regulators of several qualitative and quantitative traits in pigeonpea, which can be utilized for superior breed development. Ppomics db has been made available to researchers to acquire the related omics information and perform multi-omics data analysis.
Cajanus cajan 在印度俗称 Arhar 或 tur,是一种非常珍贵的豆科植物。鸽子豆是一种产于世界热带和亚热带地区的耐旱豆科作物,含有丰富的蛋白质、碳水化合物、纤维和矿物质。它被视为 "素食者的肉食",可解决全球营养不良问题。尽管它具有重要的营养和经济价值,但由于缺乏对其基因组资源的全面了解,无法通过分子育种计划和生物技术干预对其进行合理利用。目前已有多个鸽子豆基因组资源库,但还没有针对 C. cajan 的统一的多组学综合数据库。在此,我们首次报告了一个全面的鸽子豆 omics 数据库,名为 Ppomics 数据库 (db),可在 https://ppomics.multiwebx.com/ 上查阅,该数据库提供了多组学各方面的最新信息,专门用于表型组学(定性和定量)、基因组学、转录组学和蛋白质组学数据的编目。Ppomics db 是一个集成的多组学平台,用于发现鸽子豆多个定性和定量性状的重要调节因子,可用于优良品种的开发。Ppomics db 可供研究人员获取相关的组学信息并进行多组学数据分析。
{"title":"Ppomicsdb: A Multi-Omics Database for Genetic and Molecular Breeding Applications in Pigeonpea","authors":"Nisha Singh, Megha Ujinwal, Nagendra Kumar Singh","doi":"10.1002/leg3.220","DOIUrl":"https://doi.org/10.1002/leg3.220","url":null,"abstract":"<p><i>Cajanus cajan</i>, commonly known as Arhar or tur in India, is a highly treasured plant species belonging to the Fabaceae family. Pigeonpea is a drought-tolerant legume crop produced in the world's tropics and subtropics areas, rich source of protein, carbohydrates, fiber, and minerals. It is considered as “meat for vegetarian people” and addresses malnutrition issues globally. Despite its nutritional and economic importance, the lack of comprehensive knowledge about its genomic resources prevents it from being used wisely through molecular breeding programs and biotechnological intervention. Several genomic repositories on pigeonpea are available; however, there is no cohesive integrated multi-omics database available for <i>C. cajan</i>. Here, we present a first report on comprehensive pigeonpea omics database, named as <i>Ppomics database</i> (db) available at https://ppomics.multiwebx.com/, which provides up-to-date various aspects of multi-omics information devoted to the catalogs phenomics (both qualitative and quantitative), genomics, transcriptomics, and proteomics data. <i>Ppomics</i> db is an integrated multi-omics platform for discovering important regulators of several qualitative and quantitative traits in pigeonpea, which can be utilized for superior breed development. <i>Ppomics</i> db has been made available to researchers to acquire the related omics information and perform multi-omics data analysis.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.220","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140550082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The study was based on primary data from 473 lentil farmers selected randomly to analyze productivity, profitability, efficiency, and sensitivity of lentil farms in Nepal. Methods like benefit–cost, break-even, margin safety, and sensitivity analysis, scaling technique, Cobb–Douglas type of production function, and stochastic frontier were adopted to derive farm economics, allocative, and cost efficiency levels. With average productivity of 672 kg/ha, lentil farmers in the study area were earning about 41% profit as of gross return with a profitability index of 0.78. About 45% margin of safety and estimates of benefit–cost ratio above one on all sensitivity measures is indicative of low risk and robust enterprise. Resources allocated in lentil production were found inefficient, and to achieve maximum return, expenses on land preparation, seed, nutrient, and plant protection cum irrigation should be increased by 27.6%, 80%, 33.1%, and 97%, respectively. Similarly, expenses on labor and harvesting activities need to be decreased by 30.1% and 23.6%. Labor cost and seed cost were the most important variables, and a 1% increase would surge the total production costs by 0.42% and 0.19%, respectively. The cost efficiency was estimated as 1.137 mean value, meaning that over 13.7% of the costs in lentil farms is wasted while comparing best-practiced farm. Only about 48% of farms is fairly efficient at efficiency levels 1.0 to 1.09, but the majority is inefficient, which needs to minimize the waste of resources. Although suffering from climatic risks and production-related problems, lentil enterprise is profitable, less risky, less sensitive, and fairly to inefficient in resource use. Wise attention is need on the part of farm management and resource utilization. Farmers are suggested to maintain farm size around 0.5 ha or below 1 ha, use only improved varietal seed, cut labor expenses with the use of machinery, and perform adequate tillage during sowing followed by effective disease management practices.
{"title":"Are Lentil (Lens culinaris) Farms Productive, Profitable, and Efficient in Resource Allocation? A Cross-Sectional Study From Nepal","authors":"Binod Ghimire, Shiva Chandra Dhakal, Santosh Marahatta, Ram Chandra Bastakoti","doi":"10.1002/leg3.217","DOIUrl":"https://doi.org/10.1002/leg3.217","url":null,"abstract":"<p>The study was based on primary data from 473 lentil farmers selected randomly to analyze productivity, profitability, efficiency, and sensitivity of lentil farms in Nepal. Methods like benefit–cost, break-even, margin safety, and sensitivity analysis, scaling technique, Cobb–Douglas type of production function, and stochastic frontier were adopted to derive farm economics, allocative, and cost efficiency levels. With average productivity of 672 kg/ha, lentil farmers in the study area were earning about 41% profit as of gross return with a profitability index of 0.78. About 45% margin of safety and estimates of benefit–cost ratio above one on all sensitivity measures is indicative of low risk and robust enterprise. Resources allocated in lentil production were found inefficient, and to achieve maximum return, expenses on land preparation, seed, nutrient, and plant protection cum irrigation should be increased by 27.6%, 80%, 33.1%, and 97%, respectively. Similarly, expenses on labor and harvesting activities need to be decreased by 30.1% and 23.6%. Labor cost and seed cost were the most important variables, and a 1% increase would surge the total production costs by 0.42% and 0.19%, respectively. The cost efficiency was estimated as 1.137 mean value, meaning that over 13.7% of the costs in lentil farms is wasted while comparing best-practiced farm. Only about 48% of farms is fairly efficient at efficiency levels 1.0 to 1.09, but the majority is inefficient, which needs to minimize the waste of resources. Although suffering from climatic risks and production-related problems, lentil enterprise is profitable, less risky, less sensitive, and fairly to inefficient in resource use. Wise attention is need on the part of farm management and resource utilization. Farmers are suggested to maintain farm size around 0.5 ha or below 1 ha, use only improved varietal seed, cut labor expenses with the use of machinery, and perform adequate tillage during sowing followed by effective disease management practices.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.217","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140544405","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brian P. Mwense, Swivia M. Hamabwe, Kuwabo Kuwabo, Mebelo Mataa, Phillip N. Miklas, Chikoti Mukuma, Kelvin Kamfwa
Common bean (Phaseolus vulgaris L.) is an important crop grown for household revenue, food, and nutrition security in many parts of the world, especially in Africa and Latin America. Anthracnose caused by Colletotrichum lindemuthianum is a major disease of common bean globally. The objective of this study was to determine the response of selected pinto bean genotypes to seven races of C. lindemuthianum the causative fungus for anthracnose. A total of 56 pinto bean genotypes and three checks were evaluated for resistance to C. lindemuthianum races 51, 65, 73, 247, 253, 263, and 1085. Significant differences were observed among the 56 pinto genotypes in their reaction to the seven races, which was generally skewed towards susceptibility except for races 51 and 73. There was no genotype that was resistant to all seven races. In general, the genotypes that showed resistance to most of the races were those that carried Co-42, which highlighted the importance of this locus to anthracnose resistance in pinto beans. Three genotypes—NDZ14006-4, NDZ14110-4, and NDZ14043—showed superior resistance (resistant to six of the seven races).
{"title":"Evaluation of Pinto Genotypes of Common Bean for Resistance to Anthracnose","authors":"Brian P. Mwense, Swivia M. Hamabwe, Kuwabo Kuwabo, Mebelo Mataa, Phillip N. Miklas, Chikoti Mukuma, Kelvin Kamfwa","doi":"10.1002/leg3.228","DOIUrl":"https://doi.org/10.1002/leg3.228","url":null,"abstract":"<p>Common bean (<i>Phaseolus vulgaris</i> L.) is an important crop grown for household revenue, food, and nutrition security in many parts of the world, especially in Africa and Latin America. Anthracnose caused by <i>Colletotrichum lindemuthianum</i> is a major disease of common bean globally. The objective of this study was to determine the response of selected pinto bean genotypes to seven races of <i>C. lindemuthianum</i> the causative fungus for anthracnose. A total of 56 pinto bean genotypes and three checks were evaluated for resistance to <i>C. lindemuthianum</i> races 51, 65, 73, 247, 253, 263, and 1085. Significant differences were observed among the 56 pinto genotypes in their reaction to the seven races, which was generally skewed towards susceptibility except for races 51 and 73. There was no genotype that was resistant to all seven races. In general, the genotypes that showed resistance to most of the races were those that carried <i>Co-4</i><sup><i>2</i></sup>, which highlighted the importance of this locus to anthracnose resistance in pinto beans. Three genotypes—NDZ14006-4, NDZ14110-4, and NDZ14043—showed superior resistance (resistant to six of the seven races).</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.228","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140544407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A combination of the two methods of stability analysis, the additive main effect and multiplicative interaction (AMMI) and the best linear unbiased prediction (BLUP), based on weighted average of stability (WAASB) estimated by the linear mixed models (LMM) index identified the improved genotypes. In this study, 17 advanced genotypes of lentil were studied at two locations, Zanjan and Maragheh, during the two seasons. To examine the genotype × environment interaction, the AMMI and BLUP methods using the WAASB and weighted average of mean performance (WAASBY) index were combined to evaluate the performance stability of genotypes according to different experimental plots. Considering the significant genotype × environment interaction based on likelihood ratio test (LRT), data were analyzed by the BLUP method. The highest grain yield was detected for genotype 13, followed by genotypes 7, 11, 20, 5, 12, and 19 with higher productivity than the grand mean. To select genotypes according to yield and stability, the WAASBY index was defined by combining mean grain yield and stability. Considering 50:50 contributions for the two components, the grain yield and stability of the 13 genotypes were higher than the grand mean. The highest WAASBY was observed for genotypes 7, 20, and 12, which were determined as the best genotypes of lentil under agroecological conditions encountered in the current study regions.
{"title":"Evaluation of Efficiency of Weighted Average of Stability and Mean Performance Estimated by Linear Mixed Models for Identifying High-Yielding Lentil Genotypes Adapted to Rainfed Regions","authors":"Seyedeh Soudabeh Shobeiri, Payam Pezeshkpour, Bita Naseri","doi":"10.1002/leg3.226","DOIUrl":"https://doi.org/10.1002/leg3.226","url":null,"abstract":"<p>A combination of the two methods of stability analysis, the additive main effect and multiplicative interaction (AMMI) and the best linear unbiased prediction (BLUP), based on weighted average of stability (WAASB) estimated by the linear mixed models (LMM) index identified the improved genotypes. In this study, 17 advanced genotypes of lentil were studied at two locations, Zanjan and Maragheh, during the two seasons. To examine the genotype × environment interaction, the AMMI and BLUP methods using the WAASB and weighted average of mean performance (WAASBY) index were combined to evaluate the performance stability of genotypes according to different experimental plots. Considering the significant genotype × environment interaction based on likelihood ratio test (LRT), data were analyzed by the BLUP method. The highest grain yield was detected for genotype 13, followed by genotypes 7, 11, 20, 5, 12, and 19 with higher productivity than the grand mean. To select genotypes according to yield and stability, the WAASBY index was defined by combining mean grain yield and stability. Considering 50:50 contributions for the two components, the grain yield and stability of the 13 genotypes were higher than the grand mean. The highest WAASBY was observed for genotypes 7, 20, and 12, which were determined as the best genotypes of lentil under agroecological conditions encountered in the current study regions.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.226","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140544406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cowpea (Vigna unguiculata L. (Walp)) is a multipurpose legume, which has good nutritional properties. Nutritional parameters assessed conventionally can be labour intensive, costly and time taking for germplasm screening. Near-infrared reflectance spectroscopy (NIRS) is a rapid and nondestructive method, which can facilitate high-throughput germplasm screening. In our study, estimation of amylose and sugars has been done using NIRS. Two preprocessing methods, that is, SNV-DT (standard normal variate with detrending) and MSC (multiplicative scatter correction), were performed for optimization of the original spectra. Subsequently, MPLS (modified partial least square) regression method was employed to construct the prediction models. In amylose, the best RSQexternal (coefficient of determination) (0.962) was found in SNV-DT with mathematical treatment 3,8,8,2. The same result was shown in sugar where the best RSQexternal (0.914) was found in SNV-DT with mathematical treatment 3,4,4,1. Overall, in the case of amylose and sugars, SNV-DT was found to be a good preprocessing treatment than MSC. Paired t-test values in all the treatments for both the preprocessing methods were > 0.05 indicating their reliability. High RSQexternal values for both the traits imply the applicability of the prediction models. Thus, these models can facilitate high-throughput germplasm screening in different national and international crop improvement programmes focusing on quality traits.
{"title":"A Comparison of Spectral Preprocessing Methods and Their Effects on Nutritional Traits in Cowpea Germplasm","authors":"Siddhant Ranjan Padhi, Racheal John, Kuldeep Tripathi, Dhammaprakash Pandhari Wankhede, Tanay Joshi, Jai Chand Rana, Amritbir Riar, Rakesh Bhardwaj","doi":"10.1002/leg3.229","DOIUrl":"https://doi.org/10.1002/leg3.229","url":null,"abstract":"<p>Cowpea (<i>Vigna unguiculata</i> L. (Walp)) is a multipurpose legume, which has good nutritional properties. Nutritional parameters assessed conventionally can be labour intensive, costly and time taking for germplasm screening. Near-infrared reflectance spectroscopy (NIRS) is a rapid and nondestructive method, which can facilitate high-throughput germplasm screening. In our study, estimation of amylose and sugars has been done using NIRS. Two preprocessing methods, that is, SNV-DT (standard normal variate with detrending) and MSC (multiplicative scatter correction), were performed for optimization of the original spectra. Subsequently, MPLS (modified partial least square) regression method was employed to construct the prediction models. In amylose, the best RSQ<sub>external</sub> (coefficient of determination) (0.962) was found in SNV-DT with mathematical treatment 3,8,8,2. The same result was shown in sugar where the best RSQ<sub>external</sub> (0.914) was found in SNV-DT with mathematical treatment 3,4,4,1. Overall, in the case of amylose and sugars, SNV-DT was found to be a good preprocessing treatment than MSC. Paired <i>t</i>-test values in all the treatments for both the preprocessing methods were > 0.05 indicating their reliability. High RSQ<sub>external</sub> values for both the traits imply the applicability of the prediction models. Thus, these models can facilitate high-throughput germplasm screening in different national and international crop improvement programmes focusing on quality traits.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.229","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140544408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Girum K. Ejigu, Raymond P. Glahn, Clare M. Mukankusi, Berhanu A. Fenta, Jason A. Wiesinger
Common bean (Phaseolus vulgaris L.) is a grain legume rich in proteins and micronutrients, particularly iron and zinc. In this study, 30 small-seeded genotypes were planted in five locations in Ethiopia, following an alpha lattice design with three replications, to determine environmental and genotypic influence on the Fe and Zn concentration. Based on their Fe and Zn contents, bean cultivars were evaluated for adaptability and stability using AMMI analysis. The Fe concentrations of raw bean seed varied from 44.4 to 84.4 μg/g within the panel of small-seeded genotypes, with an average range of variance of 18 μg/g across environments, and its seed Zn concentrations varied from 19.7 to 32.3 μg/g, with an average range of variance of 12.6 μg/g across environments. The averages bean Fe concentration among the small-seeded genotypes across sites in Ethiopia was 62.2 and 26.1 μg/g for Zn concentrations. Results from the analysis of variance using the AMMI model indicated that genotypes accounted for 20.53% and 9.49% of the total variance in seed Fe and Zn concentrations, respectively. The environment had a greater impact, affecting 60.92% and 81.52% of total sum of squares for Fe and Zn concentrations, respectively. According to the broad-sense heritability, there appears to be some genetic control over Fe and Zn concentrations. However, the substantial effects of the environment and genotype-by-environment interaction on Fe and Zn concentrations in small-seeded genotypes indicates breeding for higher amounts of trace minerals in new bean varieties could be a challenging task. This means the notion that beans can be biofortified to have higher concentrations of Fe and Zn might not be achievable in Ethiopia. A shift in breeding strategies that focuses on traits to enhance the bioavailability of Fe and Zn from bean is warranted and could be a solution to enhance the delivery of iron from small-seeded beans produced in Ethiopia.
{"title":"Genetic and the Environmental Influences on the Concentrations Iron and Zinc in Small Seeded Common Bean (Phaseolus vulgaris L.) Varieties and Advanced Lines From Ethiopia","authors":"Girum K. Ejigu, Raymond P. Glahn, Clare M. Mukankusi, Berhanu A. Fenta, Jason A. Wiesinger","doi":"10.1002/leg3.221","DOIUrl":"https://doi.org/10.1002/leg3.221","url":null,"abstract":"<p>Common bean (<i>Phaseolus vulgaris</i> L.) is a grain legume rich in proteins and micronutrients, particularly iron and zinc. In this study, 30 small-seeded genotypes were planted in five locations in Ethiopia, following an alpha lattice design with three replications, to determine environmental and genotypic influence on the Fe and Zn concentration. Based on their Fe and Zn contents, bean cultivars were evaluated for adaptability and stability using AMMI analysis. The Fe concentrations of raw bean seed varied from 44.4 to 84.4 μg/g within the panel of small-seeded genotypes, with an average range of variance of 18 μg/g across environments, and its seed Zn concentrations varied from 19.7 to 32.3 μg/g, with an average range of variance of 12.6 μg/g across environments. The averages bean Fe concentration among the small-seeded genotypes across sites in Ethiopia was 62.2 and 26.1 μg/g for Zn concentrations. Results from the analysis of variance using the AMMI model indicated that genotypes accounted for 20.53% and 9.49% of the total variance in seed Fe and Zn concentrations, respectively. The environment had a greater impact, affecting 60.92% and 81.52% of total sum of squares for Fe and Zn concentrations, respectively. According to the broad-sense heritability, there appears to be some genetic control over Fe and Zn concentrations. However, the substantial effects of the environment and genotype-by-environment interaction on Fe and Zn concentrations in small-seeded genotypes indicates breeding for higher amounts of trace minerals in new bean varieties could be a challenging task. This means the notion that beans can be biofortified to have higher concentrations of Fe and Zn might not be achievable in Ethiopia. A shift in breeding strategies that focuses on traits to enhance the bioavailability of Fe and Zn from bean is warranted and could be a solution to enhance the delivery of iron from small-seeded beans produced in Ethiopia.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 2","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.221","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140345699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gerard Oballim, Wilson R. Opile, Julius O. Ochuodho
Phytic acid, proteins, and oils are seed storage compounds that play a role in germination and seedling growth and may determine seed quality. The pattern of accumulation of these compounds and the relationship of their contents with the seed quality of the Bambara nut (BN) are poorly understood. Seeds of three BN landraces, AbiBam001 (black/cream), LocalBam (brown speckled), and TVSU544 (cream), were harvested from two field experiments at different maturation stages and tested for final germination percentage (FGP), germination velocity index (GVI), and seedling dry weight (SDW). Seed samples from the same experiments were analyzed for phytic acid and proximate composition. Kendall's ranked correlation was used to describe relationships between phytic acid, protein, and oil contents and the seed quality of the landraces. Results showed no differences in the phytate, protein, and oil contents of landraces during seed maturation (p > 0.05), except for the phytate content of AbiBam001 (p < 0.05), which increased in the first experiment. At mass maturity, AbiBam001 and LocalBam had higher phytate and less protein and oil contents than TVSU544, implying that seed coat color may influence the phytate, protein, and oil contents of BN landraces. Higher phytate content in landraces appeared to relate positively with FGP, GVI, and SDW and vice versa. Phytic acid may positively affect seed germinability in BN landraces with high phytate content but may affect it negatively in low-phytate landraces. The oil content of all landraces had negative correlations with most seed quality characteristics, suggesting that BN oils either are not priority reserves or play a minimal role in germination and seedling growth.
{"title":"Phytic Acid, Protein, and Oil Contents and Their Relationship With Seed Quality During Seed Maturation of Bambara Nut (Vigna subterranea (L.) Verdc.) Landraces","authors":"Gerard Oballim, Wilson R. Opile, Julius O. Ochuodho","doi":"10.1002/leg3.222","DOIUrl":"https://doi.org/10.1002/leg3.222","url":null,"abstract":"<p>Phytic acid, proteins, and oils are seed storage compounds that play a role in germination and seedling growth and may determine seed quality. The pattern of accumulation of these compounds and the relationship of their contents with the seed quality of the Bambara nut (BN) are poorly understood. Seeds of three BN landraces, AbiBam001 (black/cream), LocalBam (brown speckled), and TVSU544 (cream), were harvested from two field experiments at different maturation stages and tested for final germination percentage (FGP), germination velocity index (GVI), and seedling dry weight (SDW). Seed samples from the same experiments were analyzed for phytic acid and proximate composition. Kendall's ranked correlation was used to describe relationships between phytic acid, protein, and oil contents and the seed quality of the landraces. Results showed no differences in the phytate, protein, and oil contents of landraces during seed maturation (<i>p</i> > 0.05), except for the phytate content of AbiBam001 (<i>p</i> < 0.05), which increased in the first experiment. At mass maturity, AbiBam001 and LocalBam had higher phytate and less protein and oil contents than TVSU544, implying that seed coat color may influence the phytate, protein, and oil contents of BN landraces. Higher phytate content in landraces appeared to relate positively with FGP, GVI, and SDW and vice versa. Phytic acid may positively affect seed germinability in BN landraces with high phytate content but may affect it negatively in low-phytate landraces. The oil content of all landraces had negative correlations with most seed quality characteristics, suggesting that BN oils either are not priority reserves or play a minimal role in germination and seedling growth.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.222","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140209604","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Modreen Chinji, Swivia Hamabwe, Kuwabo Kuwabo, Isabel Mugovu, Rebeca Thole, Maria Mazala, Juan M. Osorno, Phillip McClean, Celestina Jochua, Carlos Urrea, Chikoti Mukuma, Virginia Chisale, Kelvin Kamfwa
The common bean weevil (Acanthoscellides obtectus [Say]) is a major post-harvest pest of common bean (Phaseolus vulgaris L.) in tropical regions. Developing and using weevil-resistant varieties is the most environmentally and cost-effective means of mitigating the losses caused by the common bean weevil. The arcelin–phytohemagglutinin–alpha-amylase (APA) locus, originally from tepary bean (Phaseolus acutifolius A. Gray), provides effective resistance against the common bean weevil. The APA locus is currently deployed in very limited market classes, and knowledge of the stability of its resistance across different market classes of common bean is limited. The objectives of this study were to (i) introgress the APA locus into selected market classes of Andean gene pool of common bean and (ii) determine the stability of APA-based resistance to A. obtectus (AO) in multiple market classes of common bean. A total of 571 F5:7 breeding lines derived from crossing the weevil-resistant breeding line AO-1012-29-3-3A (AO-3A) possessing the APA locus with seven Andean genotypes belonging to five market classes were evaluated for resistance to AO. Of the 571 breeding lines screened, 16 were resistant, representing a low weevil resistance recovery rate of 2.8%. These lines are across diverse market classes, including those preferred in African countries. Of the 16 newly developed resistant breeding lines, six were more resistant to AO (scores ranging from 1–1.3) than AO-3A (score of 2), and these can be used for further genetic enhancement of common bean resistance to AO.
菜豆象鼻虫(Acanthoscellides obtectus [Say])是热带地区菜豆(Phaseolus vulgaris L.)收获后的主要害虫。开发和使用抗象虫品种是减少豆象虫造成的损失的最环保和最具成本效益的方法。arcelin-phytohemagglutinin-alpha-amylase (APA) 基因座最初来自毛豆(Phaseolus acutifolius A. Gray),可有效抵抗豆象虫。APA 基因座目前只在非常有限的市场类别中使用,对其在不同市场类别的四季豆中的抗性稳定性了解有限。本研究的目标是:(i) 将 APA 基因座导入安第斯基因库中选定的蚕豆市场类别;(ii) 确定基于 APA 基因的蚕豆抗性在多个市场类别中的稳定性。通过将具有 APA 基因座的抗象鼻虫育种品系 AO-1012-29-3-3A(AO-3A)与属于五个市场类别的七个安第斯基因型杂交,共获得了 571 个 F5:7 育种品系,对它们的 AO 抗性进行了评估。在筛选出的 571 个育种品系中,16 个具有抗性,象鼻虫抗性恢复率较低,仅为 2.8%。这些品系涉及不同的市场类别,包括非洲国家偏爱的品系。在这 16 个新开发的抗性育种品系中,有 6 个品系比 AO-3A(2 分)对 AO 的抗性更强(1-1.3 分不等),这些品系可用于进一步提高普通豆类对 AO 的抗性。
{"title":"Introgression and Stability of Common Bean Weevil (Acanthoscelides obtectus [Say]) Resistance in Diverse Market Classes From the Andean Gene Pool of Common Bean","authors":"Modreen Chinji, Swivia Hamabwe, Kuwabo Kuwabo, Isabel Mugovu, Rebeca Thole, Maria Mazala, Juan M. Osorno, Phillip McClean, Celestina Jochua, Carlos Urrea, Chikoti Mukuma, Virginia Chisale, Kelvin Kamfwa","doi":"10.1002/leg3.223","DOIUrl":"https://doi.org/10.1002/leg3.223","url":null,"abstract":"<p>The common bean weevil (<i>Acanthoscellides obtectus</i> [Say]) is a major post-harvest pest of common bean (<i>Phaseolus vulgaris</i> L.) in tropical regions. Developing and using weevil-resistant varieties is the most environmentally and cost-effective means of mitigating the losses caused by the common bean weevil. The arcelin–phytohemagglutinin–alpha-amylase (APA) locus, originally from tepary bean (<i>Phaseolus acutifolius</i> A. Gray), provides effective resistance against the common bean weevil. The APA locus is currently deployed in very limited market classes, and knowledge of the stability of its resistance across different market classes of common bean is limited. The objectives of this study were to (i) introgress the APA locus into selected market classes of Andean gene pool of common bean and (ii) determine the stability of APA-based resistance to <i>A. obtectus</i> (AO) in multiple market classes of common bean. A total of 571 F<sub>5:7</sub> breeding lines derived from crossing the weevil-resistant breeding line AO-1012-29-3-3A (AO-3A) possessing the APA locus with seven Andean genotypes belonging to five market classes were evaluated for resistance to AO. Of the 571 breeding lines screened, 16 were resistant, representing a low weevil resistance recovery rate of 2.8%. These lines are across diverse market classes, including those preferred in African countries. Of the 16 newly developed resistant breeding lines, six were more resistant to AO (scores ranging from 1–1.3) than AO-3A (score of 2), and these can be used for further genetic enhancement of common bean resistance to AO.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.223","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140181651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Claudio Calia, Cataldo Pulvento, Mohamed Houssemeddine Sellami, Luigi Tedone, Claudia Ruta, Giuseppe De Mastro
Chickpea (Cicer arietinum L.) cultivation practices underwent significant transformation in recent decades due to advancements in scientific knowledge and the need for sustainable, productive farming systems. In this study, a bibliometric analysis of scientific publications from 1977 to 2023 on chickpea agronomic practices was conducted, revealing critical insights. India, as the world's leading chickpea producer, plays a pivotal role, not only in production but also as a significant contributor to scholarly research and international collaborations. The choice of journals for publication is found to influence research impact.
Analysis of research trends using co-occurrence networks of keywords reveals evolving focuses, with a recent shift towards qualitative aspects, such as protein content and nutritional quality, as well as sustainable agricultural practices. The study also emphasizes the necessity for further research on chickpea quality characteristics, strategies to mitigate antinutritional factors, yield optimization, and the impact of climate change on chickpea cultivation. Ultimately, chickpea cultivation research holds great promise in contributing to global food security and environmental sustainability. This bibliometric analysis provides a comprehensive overview of chickpea cultivation research and offers valuable insights for researchers, policymakers, and stakeholders as they navigate the future of sustainable agriculture and the quest for protein-rich food production while minimizing the environmental footprint.
{"title":"A Bibliometric Analysis of Chickpea Agronomic Practices in the World During 45 Years of Scientific Research","authors":"Claudio Calia, Cataldo Pulvento, Mohamed Houssemeddine Sellami, Luigi Tedone, Claudia Ruta, Giuseppe De Mastro","doi":"10.1002/leg3.219","DOIUrl":"https://doi.org/10.1002/leg3.219","url":null,"abstract":"<p>Chickpea (<i>Cicer arietinum</i> L.) cultivation practices underwent significant transformation in recent decades due to advancements in scientific knowledge and the need for sustainable, productive farming systems. In this study, a bibliometric analysis of scientific publications from 1977 to 2023 on chickpea agronomic practices was conducted, revealing critical insights. India, as the world's leading chickpea producer, plays a pivotal role, not only in production but also as a significant contributor to scholarly research and international collaborations. The choice of journals for publication is found to influence research impact.</p><p>Analysis of research trends using co-occurrence networks of keywords reveals evolving focuses, with a recent shift towards qualitative aspects, such as protein content and nutritional quality, as well as sustainable agricultural practices. The study also emphasizes the necessity for further research on chickpea quality characteristics, strategies to mitigate antinutritional factors, yield optimization, and the impact of climate change on chickpea cultivation. Ultimately, chickpea cultivation research holds great promise in contributing to global food security and environmental sustainability. This bibliometric analysis provides a comprehensive overview of chickpea cultivation research and offers valuable insights for researchers, policymakers, and stakeholders as they navigate the future of sustainable agriculture and the quest for protein-rich food production while minimizing the environmental footprint.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.219","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140139251","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chickpea production is threatened by severe epidemics of Ascochyta blight occurring in main chickpea growing lands under appropriate weather conditions worldwide. In this 4-year research, occurrence of Ascochyta blight was monitored across nine main chickpea growing areas of Kermanshah province, western part of Iran. Each year, commercial chickpea fields were studied on a weekly basis from March to June. Disease data were collected as disease incidence (percentage of infected plants) and severity (percentage of infected tissues) and occurrence of epidemics. Weather data were collected as air temperature, rainfall, and relative humidity (RH) on a daily basis. According to a factor analysis, which explained 83% of data variance, 13 weather predictors were selected to estimate disease epidemics developed across different areas. Before modeling, a principal component analysis determined predictive values for these selected weather variables. Then, eight predictors of rainy days in March and April, mean RH in February, mean minimum temperature in January–March–April, and rainfalls in May and June were involved in model based on their predictive values. Current findings advanced our knowledge on the best weather predictors of severe epidemics of Ascochyta blight in chickpea crops at large scale.
{"title":"Prediction of Severe Epidemics of Chickpea Ascochyta Blight Using Weather Variables","authors":"Bita Naseri, Farshid Mahmodi","doi":"10.1002/leg3.218","DOIUrl":"https://doi.org/10.1002/leg3.218","url":null,"abstract":"<p>Chickpea production is threatened by severe epidemics of Ascochyta blight occurring in main chickpea growing lands under appropriate weather conditions worldwide. In this 4-year research, occurrence of Ascochyta blight was monitored across nine main chickpea growing areas of Kermanshah province, western part of Iran. Each year, commercial chickpea fields were studied on a weekly basis from March to June. Disease data were collected as disease incidence (percentage of infected plants) and severity (percentage of infected tissues) and occurrence of epidemics. Weather data were collected as air temperature, rainfall, and relative humidity (RH) on a daily basis. According to a factor analysis, which explained 83% of data variance, 13 weather predictors were selected to estimate disease epidemics developed across different areas. Before modeling, a principal component analysis determined predictive values for these selected weather variables. Then, eight predictors of rainy days in March and April, mean RH in February, mean minimum temperature in January–March–April, and rainfalls in May and June were involved in model based on their predictive values. Current findings advanced our knowledge on the best weather predictors of severe epidemics of Ascochyta blight in chickpea crops at large scale.</p>","PeriodicalId":17929,"journal":{"name":"Legume Science","volume":"6 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/leg3.218","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140063712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}