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The Tree Shrew Model of Parkinson Disease: A Cost-Effective Alternative to Nonhuman Primate Models 帕金森病树鼩模型:替代非人灵长类动物模型的经济有效的方法。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-27 DOI: 10.1016/j.labinv.2024.102145
Hao Li , Leyi Mei , Xiupeng Nie , Liping Wu , Longbao Lv , Xiaofeng Ren , Jitong Yang , Haonan Cao , Jing Wu , Yuhua Zhang , Yingzhou Hu , Wenchao Wang , Christoph W. Turck , Bingyin Shi , Jiali Li , Lin Xu , Xintian Hu
The surge in demand for experimental monkeys has led to a rapid increase in their costs. Consequently, there is a growing need for a cost-effective model of Parkinson disease (PD) that exhibits all core clinical and pathologic phenotypes. Evolutionarily, tree shrews (Tupaia belangeri) are closer to primates in comparison with rodents and could be an ideal species for modeling PD. To develop a tree shrew PD model, we used the 1-methyl-4-phenylpyridinium (MPP+), a metabolite derived from 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine, to induce lesions in dopaminergic neurons of the unilateral substantia nigra. The induced tree shrew model consistently exhibited and maintained all classic clinical manifestations of PD for a 5-month period. The symptoms included bradykinesia, rest tremor, and postural instability, and ∼50% individuals showed apomorphine-induced rotations, a classic phenotype of unilateral PD models. All these are closely resembled the ones observed in PD monkeys. Meanwhile, this model was also sensitive to L-dopa treatment in a dose-dependent manner, which suggested that the motor deficits are dopamine dependent. Immunostaining showed a significant loss of dopaminergic neurons (∼95%) in the lesioned substantia nigra, which is a crucial PD pathological marker. Moreover, a control group of nigral saline injection did not show any motor deficits and pathological changes. Cytomorphologic analysis revealed that the size of nigral dopaminergic neurons in tree shrews is much bigger than that of rodents and is close to that of macaques. The morphologic similarity may be an important structural basis for the manifestation of the highly similar phenotypes between monkey and tree shrew PD models. Collectively, in this study, we have successfully developed a PD model in a small animal species that faithfully recapitulated the classic clinical symptoms and key pathological indicators of PD monkeys, providing a novel and low-cost avenue for evaluation of PD treatments and underlying mechanisms.
对实验猴的需求激增导致其成本迅速增加。因此,人们越来越需要一种能表现出所有核心临床和病理表型的帕金森病(PD)低成本高效益模型。与啮齿类动物相比,树鼩(Tupaia belangeri)在进化过程中更接近灵长类动物,因此可能是建立帕金森病模型的理想物种。为了建立树鼩帕金森病模型,我们使用了1-甲基-4-苯基吡啶鎓(MPP+)(一种来自1-甲基-4-苯基-1,2,3,6-四氢吡啶(MPTP)的代谢物)来诱导单侧黑质多巴胺能神经元的病变。诱导的树鼩模型在5个月的时间里持续表现出并维持了所有典型的帕金森病临床表现。症状包括运动迟缓、静止性震颤、姿势不稳,约50%的个体表现出阿朴吗啡诱导的旋转,这是单侧帕金森病模型的典型表型。所有这些都与在帕金森病猴身上观察到的症状非常相似。同时,该模型对左旋多巴治疗也很敏感,且呈剂量依赖性,这表明运动障碍与多巴胺有关。免疫染色显示,病变的黑质中多巴胺能神经元显著减少(约95%),而多巴胺能神经元是帕金森病的重要病理标志。此外,注射生理盐水的黑质对照组未出现任何运动障碍和病理变化。细胞形态学分析表明,树鼩黑质多巴胺能神经元的大小远大于啮齿类动物,与猕猴接近。形态学上的相似性可能是猴和树鼩帕金森病模型表现出高度相似表型的重要结构基础。总之,在这项研究中,我们成功地在小动物物种中建立了一个帕金森病模型,该模型忠实地再现了帕金森病猴的典型临床症状和关键病理指标,为帕金森病治疗方法和潜在机制的评估提供了一个新颖和低成本的途径。
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引用次数: 0
Lymphocyte Function in Tertiary Lymphoid Structures Predicts Hepatocellular Carcinoma Outcome 三级淋巴结构中的淋巴细胞功能可预测肝细胞癌的预后
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-27 DOI: 10.1016/j.labinv.2024.102144
Jieying Li , Haiyan Xu , Jiayi Han , Pingping Sun , Xiaojing Zhang , Hui Wang , Tongyao Bian , Qiang Xu , Juling Ji , Jianfei Huang
An increasing number of studies have revealed a correlation between tertiary lymphoid structures (TLSs) and the outcome of hepatocellular carcinoma (HCC). Nevertheless, the associations between the heterogeneity of cellular composition and the overall survival (OS) in HCC remain unexplored. Here, we evaluated the cancer tissues from 150 HCC individuals using multiplex immunofluorescence to determine the presence and characteristics of TLS and to investigate the relationship between intra-TLS immunologic activity, TLS maturation, and intratumoral immune cell infiltration. Prognostic factors influencing the outcome were identified through both univariate and multivariate analyses. Additionally, the levels of cytotoxic T-lymphocyte antigen-4 (CTLA-4), programmed death 1, programmed death-ligand 1, and lymphocyte activation gene-3 were determined, as well as their relationship with TLS features were determined. TLS was detected in 71 (47.3%) of the 150 HCC cases and was related to higher intratumoral infiltration levels of lymphocytes. Additionally, intra-TLS lymphocyte proliferation correlated with that of intratumoral lymphocytes, and the presence of TLS and a high proportion of mature TLS demonstrated a significant correlation with better prognosis (P = .013 and P = .03, respectively). Among TLS-positive tumors, a high proportion of B cells expressing activation-induced cytidine deaminase and a high proportion of CD8+ T cells expressing CD45RO were significantly related to improved OS (P = .01 and P < .001, respectively). Comparatively, a high proportion of CD21+CD20+ B cells demonstrated a significant correlation with poorer OS (P < .001). A markedly reduced number of CTLA-4+ cells in the stromal regions in TLS-negative tumors was observed compared with TLS-positive tumors (P = .01). These findings reveal a correlation between TLS presence and improved OS in HCC patients. However, TLS exhibited significant variation in maturation state, T- and B-cell proliferation, and expression of markers related to B- and T-cell function. Notably, these characteristics were also found to possess prognostic significance, indicating that certain TLS might hinder tumor immunity by inhibiting immune cells, whereas others may foster antigen-driven immune responses, likely influenced by the composition and functional status of intra-TLS lymphocytes.
越来越多的研究揭示了三级淋巴结构(TLS)与肝细胞癌(HCC)预后之间的相关性。然而,细胞组成的异质性与 HCC 总生存期(OS)之间的关系仍未得到探讨。在此,我们使用多重免疫荧光技术评估了南通大学附属肿瘤医院收治的150例HCC患者的癌组织,以确定TLS的存在和特征,并研究TLS内免疫活性、TLS成熟度和瘤内免疫细胞浸润之间的关系。通过单变量和多变量分析确定了影响预后的因素。此外,还测定了细胞毒性T淋巴细胞抗原-4(CTLA-4)、程序性死亡1(PD-1)、程序性死亡配体1(PD-L1)和淋巴细胞活化基因-3(LAG3)的水平及其与TLS特征的关系。在 150 例 HCC 中,有 71 例(47.3%)检测到 TLS,且与较高的瘤内淋巴细胞浸润水平有关。此外,TLS 内淋巴细胞增殖与瘤内淋巴细胞增殖相关,TLS 的存在和成熟 TLS 的高比例与较好的预后有显著相关性(分别为 p=0.013 和 p=0.03)。在TLS阳性肿瘤中,表达活化诱导胞苷脱氨酶(AID)的B细胞比例高和表达CD45RO的CD8+T细胞比例高与OS改善显著相关(p=0.01),p+CD20+B细胞与较差的OS显著相关(与TLS阳性肿瘤相比,在TLS阴性肿瘤的基质区观察到p+细胞(p=0.01)。这些发现揭示了TLS的存在与HCC患者OS改善之间的相关性。然而,TLS 在成熟状态、T 细胞和 B 细胞增殖以及 B 细胞和 T 细胞功能相关标记物的表达方面表现出明显的差异。值得注意的是,这些特征还具有预后意义,表明某些 TLS 可能会通过抑制免疫细胞来阻碍肿瘤免疫,而其他 TLS 则可能会促进抗原驱动的免疫反应,这可能受到 TLS 内淋巴细胞的组成和功能状态的影响。
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引用次数: 0
Spatial Heterogeneity of PD-1/PD-L1 Defined Osteosarcoma Microenvironments at Single-Cell Spatial Resolution 单细胞空间分辨率下 PD-1/PD-L1 定义的骨肉瘤微环境的空间异质性。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-23 DOI: 10.1016/j.labinv.2024.102143
Cheng Yang , Yan Lai , Juan Wang , Qin Chen , Qilin Pan , Canhua Xu , Pingfan Mo , Guangxiu Guo , Rongchun Chen , Ning Liu , Yaohong Wu
Osteosarcoma, predominantly affecting children and adolescents, is a highly aggressive bone cancer with a 5-year survival rate of 65% to 70%. The spatial dynamics between tumor-associated macrophage (TAM) and other cellular subtypes, including T cells, osteoblasts, and osteoclasts, are critical for understanding the complexities of the osteosarcoma tumor microenvironment (TME) and can provide insights into potential immunotherapeutic strategies. Our study employs a pioneering approach that combines deep learning-based digital image analysis with multiplex fluorescence immunohistochemistry to accurately implement cell detection, segmentation, and fluorescence intensity measurements for the in-depth study of the TME. We introduce a novel algorithm for TAM/osteoclast differentiation, crucial for the accurate characterization of cellular composition. Our findings reveal distinct heterogeneity in cell composition and spatial orchestration between PD-1 (−/+) and PD-L1 (−/+) patients, highlighting the role of T-cell functionality in this context. Furthermore, our analysis demonstrates the efficacy of nivolumab in suppressing tumor growth and enhancing lymphocyte infiltration without altering the M1/M2-TAM ratio. This study provides critical insights into the spatial orchestration of cellular subtypes within the PD-1/PD-L1 defined osteosarcoma TME. By leveraging advanced multiplex fluorescence immunohistochemistry and artificial intelligence, we underscore the critical role of TAMs and T-cell interactions, proposing new therapeutic avenues focusing on TAM repolarization and targeted immunotherapies, thus underscoring the study’s potential impact on improving osteosarcoma treatment.
骨肉瘤主要影响儿童和青少年,是一种侵袭性很强的骨癌,5 年生存率为 65-70%。TAM和其他细胞亚型(包括T细胞、成骨细胞和破骨细胞)之间的空间动态变化对于了解骨肉瘤肿瘤微环境(TME)的复杂性至关重要,并能为潜在的免疫治疗策略提供见解。我们的研究采用了一种开创性的方法,将基于深度学习的数字图像分析与多重荧光免疫组化(mfIHC)相结合,准确地实现了细胞检测、分割和荧光强度测量,从而对TME进行了深入研究。我们介绍了一种新的 TAM/osteoclast 分化算法,这对准确鉴定细胞组成至关重要。我们的发现揭示了 PD-1 (-/+) 和 PD-L1 (-/+) 患者在细胞组成和空间协调方面的明显异质性,突出了 T 细胞功能在这种情况下的作用。此外,我们的分析表明,nivolumab 能有效抑制肿瘤生长并增强淋巴细胞浸润,而不会改变 M1/M2 TAM 的比例。这项研究提供了有关 PD-1/PD-L1 界定的骨肉瘤 TME 内细胞亚型空间协调的重要见解。通过利用先进的 mfIHC 和人工智能,我们强调了 TAM 和 T 细胞相互作用的关键作用,提出了以 TAM 再极化和靶向免疫疗法为重点的新治疗途径,从而强调了该研究对改善骨肉瘤治疗的潜在影响。
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引用次数: 0
Involvement of BRD4 in Alcoholic Liver Injury: Autophagy Modulation via Regulation of the SIRT1/Beclin1 Axis BRD4参与酒精性肝损伤:通过调节 SIRT1/Beclin1 轴调节自噬作用
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-20 DOI: 10.1016/j.labinv.2024.102134
Jin-Yu Liu , Zhen-Long Liu , Ming Yang , Chang-Lin Du , Yan Zhu , Li-Jiao Sun , Xong-Wen Lv , Cheng Huang , Jun Li
Alcoholic liver disease (ALD) caused by chronic alcohol abuse involves complex processes from steatosis to fibrosis, cirrhosis, and hepatocellular carcinoma, posing a global health issue. Bromodomain protein 4 (BRD4) typically serves as a “reader” modulating the functions of transcription factors involved in various biological processes and disease progression. However, the specific mechanisms underlying alcoholic liver injury remain unclear. In this study, we detected aberrant BRD4 expression in the alcohol-induced ALD mouse model of chronic and binge ethanol feeding developed by the National Institute on Alcohol Abuse and Alcoholism, consistent with the in vitro results in Aml-12 mouse hepatocytes. Blocking and inhibiting BRD4 restored the impaired autophagic flux and lysosomal functions in alcohol-treated Aml-12 cells, whereas BRD4 overexpression reduced the expression levels of autophagy marker and lysosomal genes. Furthermore, mouse BRD4 knockdown, mediated by a short hairpin RNA carried by the adeno-associated virus serotype 8, significantly attenuated the alcohol-induced hepatocyte damage, including lipid deposition and inflammatory cell infiltration. Mechanistically, BRD4 overexpression in alcoholic liver injury inhibited the expression of sirtuin (SIRT)1 in Aml-12 cells. Chromatin immunoprecipitation and dual-luciferase reporter assays revealed that BRD4 functions as a transcription factor and suppressor, actively binding to the SIRT1 promoter region and inhibiting its transcription. SIRT1 activated autophagy, which was suppressed in alcoholic liver injury via Beclin1 deacetylation. In conclusion, our study revealed that BRD4 negatively regulated the SIRT1/Beclin1 axis and that its deficiency alleviated alcohol-induced liver injury in mice, thus providing a new strategy for ALD treatment.
长期酗酒引起的酒精性肝病(ALD)涉及从脂肪变性到纤维化、肝硬化和肝细胞癌的复杂过程,是一个全球性的健康问题。溴结构域蛋白 4(BRD4)通常作为 "阅读器",调节参与各种生物过程和疾病进展的转录因子的功能。然而,酒精性肝损伤的具体机制仍不清楚。在这里,我们在美国国家酒精滥用和酒精中毒研究所(NIAAA)开发的酒精诱导的慢性和暴饮暴食乙醇ALD小鼠模型中检测到了BRD4的异常表达,这与Aml-12小鼠肝细胞的体外结果一致。阻断和抑制BRD4可恢复酒精处理的Aml-12细胞受损的自噬通量和溶酶体功能,而BRD4过表达则会降低自噬标记基因和溶酶体基因的表达水平。此外,通过腺相关病毒血清型8携带的短发夹RNA敲除小鼠BRD4,可显著减轻酒精诱导的肝细胞损伤,包括脂质沉积和炎症细胞浸润。从机理上讲,酒精性肝损伤中BRD4的过表达抑制了Aml-12细胞中sirtuin(SIRT)-1的表达。染色质免疫沉淀和双荧光素酶报告实验显示,BRD4作为转录因子和抑制因子,能主动结合到SIRT1启动子区域并抑制其转录。SIRT1可激活自噬,酒精性肝损伤时,自噬通过Beclin1去乙酰化而被抑制。总之,我们的研究揭示了BRD4对SIRT1/Beclin1轴的负调控作用,缺乏BRD4可减轻酒精诱导的小鼠肝损伤,从而为ALD的治疗提供了一种新策略。
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引用次数: 0
Junctional Epidermolysis Bullosa in Sprague Dawley Rats Caused by a Frameshift Mutation of Col17a1 Gene 由 Col17a1 基因蝶变引起的 Sprague Dawley 大鼠交界性表皮松解症
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-10 DOI: 10.1016/j.labinv.2024.102132
Yoshitaka Katoh , Akira Sato , Naofumi Takahashi , Yasushi Nishioka , Naoko Shimizu-Endo , Tsuyoshi Ito , Aya Ohnuma-Koyama , Atsushi Shiga , Toshinori Yoshida , Hiroaki Aoyama

Junctional epidermolysis bullosa is an intractable cutaneous disorder in humans causing skin fragility and blistering due to mutations in genes encoding essential molecules adhering epidermis and dermis including collagen XVII. However, the pathogenesis still remains to be not fully understood perhaps because of a lack of appropriate animal models. In this study, we report novel mutant rats experiencing junctional epidermolysis bullosa, which was confirmed to be caused by a frameshift mutation of Col17a1 gene, as a rat model for investigating the underlying mechanism of pathogenesis. The mutant rats completely lacked the expression of collagen XVII and had blisters leading to infantile deaths as a homozygous condition, although their skin was apparently normal at birth by light microscopic evaluation except that immunohistochemical examination could not detect collagen XVII in any organs. These observations suggest that collagen XVII is not essential for the development of skin during the prenatal period but is indispensable for keeping epidermal-dermal connections stable after birth. Subsequent electron microscopic examinations further revealed an absence of hemidesmosomal inner plaques being composed of BP230, a binding partner of collagen XVII, and plectin in Col17a1-null newborns, albeit mRNA expressions of these molecules seemed to be unaffected at least during the fetal period. These results suggest that the lack of collagen XVII induces attenuation of hemidesmosomal inner plaques, which in turn destabilizes the epidermis-dermis connection and results in deterioration of epidermal physiology with formation of blisters after birth.

交界性表皮松解症是一种难治性皮肤病,由于编码表皮和真皮粘连的重要分子(包括胶原蛋白 XVII)的基因发生突变,导致皮肤脆弱和起水泡。然而,也许是因为缺乏适当的动物模型,人们对其发病机理仍不完全了解。在这项研究中,我们报告了一种新型的交界性表皮松解症突变大鼠,这种大鼠被证实是由 Col17a1 基因的框架移位突变引起的。突变体大鼠完全缺乏胶原蛋白 XVII 的表达,并出现水泡,导致婴儿死亡,这是一种同基因遗传病,尽管它们出生时的皮肤经光学显微镜评估明显正常,但免疫组化检查无法在任何器官中检测到胶原蛋白 XVII。这些观察结果表明,胶原蛋白 XVII 在出生前对皮肤的发育并不重要,但在出生后对保持表皮-真皮连接的稳定却不可或缺。随后的电子显微镜检查进一步发现,Col17a1 缺失的新生儿体内缺乏由胶原蛋白 XVII 的结合伙伴 BP230 和 plectin 组成的半球体内部斑块,尽管这些分子的 mRNA 表达似乎至少在胎儿时期未受影响。这些结果表明,胶原蛋白 XVII 的缺乏会导致半球体内部斑块的衰减,进而破坏表皮-真皮连接的稳定性,导致表皮生理机能退化,在出生后形成水泡。
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引用次数: 0
The Struggle Continues: NPC-TW01, A Misidentified Cell Line 斗争仍在继续:NPC-TW01,一个被误认的细胞系。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-05 DOI: 10.1016/j.labinv.2024.102124
Anna Makowska , Udo Kontny , Thomas Liehr , Ralf Weiskirchen
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引用次数: 0
Multiplexed Spatial Imaging at the Single-Cell Level Reveals Mutually Exclusive Expression of B7 Family Proteins 单细胞水平的多重空间成像揭示了 B7 家族蛋白的互斥表达。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-05 DOI: 10.1016/j.labinv.2024.102131
Kazunori Shojo , Nobuyuki Tanaka , Tetsushi Murakami , Tadatsugu Anno , Yu Teranishi , Kimiharu Takamatsu , Shuji Mikami , Takeshi Imamura , Kazuhiro Matsumoto , Mototsugu Oya

Targeting novel inhibitory ligands beyond anti-PD-1 and PD-L1 and CTLA-4 therapies is essential for the next decade of the immunotherapy era. Agents for the B7 family molecules B7-H3, B7-H4, and B7-H5 are emerging in clinical trial phases; therefore, further accumulation of evidence from both clinical and basic aspects is vital. Here, we applied a 7-color multiplexed imaging technique to analyze the profile of B7 family B7-H3/B7-H4/B7-H5 expression, in addition to PD-L1, and the spatial characteristics of immune cell infiltrates in urothelial carcinoma (UC). The results revealed that B7-H3 and B7-H4 were mainly expressed on tumor cells and B7-H5 on immune cells in UC, and most of the B7-H3/B7-H4/B7-H5-positive cells were mutually exclusive with PD-L1-positive cells. Also, the expression of B7-H4 was elevated in patients with advanced pathologic stages, and high B7-H4 expression was a significant factor affecting overall mortality following surgery in UC. Furthermore, spatial analysis revealed that the distance from the B7-H4+ cells to the nearest CD8+ cells was markedly far compared with other B7 family-positive tumor cells. Interestingly, the distance from B7-H4+ cells to the nearest CD8+ cells was significantly farther in patients dying from cancer after surgery or immune checkpoint inhibitors compared with cancer survivors; thus, high B7-H4 expression in tumor cells may inhibit CD8 infiltration into the tumor space and that B7-H4-positive cells form a specific spatial niche. In summary, we performed a comprehensive evaluation of B7 family member expression and found that the spatial distribution of B7-H4 suggests the potentially useful role of combination blockade with both B7-H4 and the current anti-PD-1/PD-L1 axis in the treatment of UC.

除了抗PD-1、PD-L1和CTLA-4疗法之外,靶向新型抑制配体对于免疫疗法时代的下一个十年也至关重要。针对 B7 家族分子 B7-H3、B7-H4 和 B7-H5 的药物正处于临床试验阶段;因此,进一步积累临床和基础方面的证据至关重要。在此,我们应用七色多重成像技术分析了尿路上皮癌(UC)中除 PD-L1 外的 B7 家族 B7-H3/B7-H4/B7-H5 表达谱以及免疫细胞浸润的空间特征。结果发现,B7-H3和B7-H4主要在肿瘤细胞上表达,而B7-H5主要在免疫细胞上表达,且大多数B7-H3/B7-H4/B7-H5阳性细胞与PD-L1阳性细胞互斥。此外,病理分期晚期患者的 B7-H4 表达升高,B7-H4 高表达是影响 UC 术后总死亡率的重要因素。此外,空间分析显示,与其他B7家族阳性肿瘤细胞相比,从B7-H4+细胞到最近的CD8+细胞的距离明显较远。有趣的是,手术后或使用免疫检查点抑制剂后死亡的癌症患者与癌症幸存者相比,B7-H4+细胞到最近的CD8+细胞的距离明显更远;因此,肿瘤细胞中B7-H4的高表达可能会抑制CD8向肿瘤空间的浸润,B7-H4阳性细胞会形成一个特定的空间龛。总之,我们对 B7 家族成员的表达进行了全面评估,发现 B7-H4 的空间分布表明,B7-H4 和目前的抗 PD-1/PD-L1 轴联合阻断在治疗 UC 中可能发挥有益作用。
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引用次数: 0
ConvNext Mitosis Identification—You Only Look Once (CNMI-YOLO): Domain Adaptive and Robust Mitosis Identification in Digital Pathology CNMI-YOLO:数字病理学中的域自适应稳健有丝分裂识别。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-02 DOI: 10.1016/j.labinv.2024.102130
Yasemin Topuz , Serdar Yıldız , Songül Varlı

In digital pathology, accurate mitosis detection in histopathological images is critical for cancer diagnosis and prognosis. However, this remains challenging due to the inherent variability in cell morphology and the domain shift problem. This study introduces ConvNext Mitosis Identification-You Only Look Once (CNMI-YOLO), a new 2-stage deep learning method that uses the YOLOv7 architecture for cell detection and the ConvNeXt architecture for cell classification. The goal is to improve the identification of mitosis in different types of cancers. We utilized the Mitosis Domain Generalization Challenge 2022 data set in the experiments to ensure the model’s robustness and success across various scanners, species, and cancer types. The CNMI-YOLO model demonstrates superior performance in accurately detecting mitotic cells, significantly outperforming existing models in terms of precision, recall, and F1 score. The CNMI-YOLO model achieved an F1 score of 0.795 on the Mitosis Domain Generalization Challenge 2022 and demonstrated robust generalization with F1 scores of 0.783 and 0.759 on the external melanoma and sarcoma test sets, respectively. Additionally, the study included ablation studies to evaluate various object detection and classification models, such as Faster-RCNN and Swin Transformer. Furthermore, we assessed the model’s robustness performance on unseen data, confirming its ability to generalize and its potential for real-world use in digital pathology, using soft tissue sarcoma and melanoma samples not included in the training data set.

在数字病理学中,准确检测组织病理学图像中的有丝分裂对癌症诊断和预后至关重要。然而,由于细胞形态的固有变异性和域偏移问题,这项工作仍具有挑战性。本研究介绍了一种新的两阶段深度学习方法 CNMI-YOLO(ConvNext Mitosis Identification-YOLO),该方法使用 YOLOv7 架构进行细胞检测,使用 ConvNeXt 架构进行细胞分类。其目标是改进不同类型癌症中有丝分裂的识别。我们在实验中使用了 MIDOG 2022 数据集,以确保模型在各种扫描仪、物种和癌症类型中的稳健性和成功率。CNMI-YOLO 模型在准确检测有丝分裂细胞方面表现出色,在精确度、召回率和 F1 分数方面明显优于现有模型。CNMI-YOLO 模型在 MIDOG 2022 上的 F1 分数为 0.795,在外部黑色素瘤和肉瘤测试集上的 F1 分数分别为 0.783 和 0.759,显示出强大的通用性。此外,该研究还包括消融研究,以评估各种对象检测和分类模型,如 Faster R-CNN 和 Swin Transformer。此外,我们还利用训练数据集中未包含的软组织肉瘤和黑色素瘤样本,评估了该模型在未见数据上的鲁棒性能,证实了它的泛化能力及其在数字病理学中的实际应用潜力。
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引用次数: 0
Effects of Degreasing Pretreatment on Immunohistochemistry and Molecular Analysis of Gastrointestinal and Breast Cancer Samples 脱脂预处理对胃肠道癌和乳腺癌样本免疫组化和分子分析的影响。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-01 DOI: 10.1016/j.labinv.2024.102125
Su Jin, De Wu, Yanggeling Zhang, Hao Tang, Jie Yu, Junfei Zhang, Xing Li, Yimeng Liu, Jiali Yang, Tianming Zhang, Min Hu, Xiaowen Li, Shiwei Xiao, Junqiu Yue, Mingwei Wang

Lymph node status is a key factor in determining stage, treatment, and prognosis in cancers. Small lymph nodes in fat-rich gastrointestinal and breast cancer specimens are easily missed in conventional sampling methods. This study examined the effectiveness of the degreasing pretreatment with dimethyl sulfoxide (DMSO) in lymph node detection and its impact on the analysis of clinical treatment–related proteins and molecules. Thirty-three cases of gastrointestinal cancer specimens from radical gastrectomy and 63 cases of breast cancer specimens from modified radical mastectomy were included. After routine sampling of lymph nodes, the specimens were immersed in DMSO for 30 minutes for defatting. We assessed changes in the number of detected lymph nodes and pN staging in 33 gastrointestinal cancer specimens and 37 breast cancer specimens. In addition, we analyzed histologic characteristics, Masson trichrome special staining, and immunohistochemistry (gastrointestinal cancer: MMR, HER2, and PD-L1; breast cancer: ER, PR, AR, HER2, Ki-67, and PD-L1). Molecular status was evaluated for colorectal cancer (KRAS, NRAS, BRAF, and microsatellite instability) and breast cancer (HER2) in gastrointestinal cancer specimens and the remaining 26 breast cancer specimens. Compared with conventional sampling, DMSO pretreatment increased the detection rate of small lymph nodes (gastrointestinal cancer: P < .001; breast cancer: P < .001) and improved pN staging in 1 case each of gastric cancer, colon cancer, and rectal cancer (3/33; 9.1%). No significant difference in the morphology, special staining, protein, and molecular status of cancer tissue after DMSO treatment was found. Based on these results and our institutional experience, we recommend incorporating DMSO degreasing pretreatment into clinical pathologic sampling practices.

淋巴结状态是决定癌症分期、治疗和预后的关键因素。传统的取样方法很容易遗漏富含脂肪的胃肠道和乳腺癌标本中的小淋巴结。本研究探讨了用二甲基亚砜(DMSO)进行脱脂预处理在淋巴结检测中的效果及其对临床治疗相关蛋白质和分子分析的影响。研究纳入了 33 例胃癌根治术标本和 63 例乳腺癌改良根治术标本。常规淋巴结取样后,将标本浸泡在二甲基亚砜中脱脂 30 分钟。我们评估了 33 例胃肠道癌标本和 37 例乳腺癌标本中检测到的淋巴结数量和 pN 分期的变化。此外,我们还分析了组织学特征、Masson 三色特殊染色和免疫组化(胃肠道癌、MMR、HER2、P-L-1):MMR、HER2、PD-L1;乳腺癌:ER、PR、AR、HER2、Ki-67、PD-L1)。对胃肠道癌标本和其余 26 份乳腺癌标本的结直肠癌(KRAS、NRAS、BRAF、MSI)和乳腺癌(HER2)分子状态进行了评估。与传统取样相比,DMSO 预处理提高了小淋巴结的检出率(胃肠癌:p
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引用次数: 0
A Novel Artificial Intelligence-Based Parameterization Approach of the Stromal Landscape in Merkel Cell Carcinoma: A Multi-Institutional Study 基于人工智能的新型梅克尔细胞癌基质景观参数化方法:一项多机构研究。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-09-01 DOI: 10.1016/j.labinv.2024.102123
Chau M. Bui , Minh-Khang Le , Masataka Kawai , Huy Gia Vuong , Kristin J. Rybski , Kathleen Mannava , Tetsuo Kondo , Takashi Okamoto , Leah Laageide , Brian L. Swick , Bonnie Balzer , Bruce R. Smoller

Tumor–stroma ratio (TSR) has been recognized as a valuable prognostic indicator in various solid tumors. This study aimed to examine the clinicopathologic relevance of TSR in Merkel cell carcinoma (MCC) using artificial intelligence (AI)-based parameterization of the stromal landscape and validate TSR scores generated by our AI model against those assessed by humans. One hundred twelve MCC cases with whole-slide images were collected from 4 different institutions. Whole-slide images were first partitioned into 128 × 128-pixel “mini-patches,” then classified using a novel framework, termed pre-tumor and stroma (Pre-TOAST) and TOAST, whose output equaled the probability of the minipatch representing tumor cells rather than stroma. Hierarchical random samplings of 50 minipatches per region were performed throughout 50 regions per slide. TSR and tumor–stroma landscape (TSL) parameters were estimated using the maximum-likelihood algorithm. Receiver operating characteristic curves showed that the area under the curve value of Pre-TOAST in discriminating classes of interest including tumor cells, collagenous stroma, and lymphocytes from nonclasses of interest including hemorrhage, space, and necrosis was 1.00. The area under the curve value of TOAST in differentiating tumor cells from related stroma was 0.93. MCC stroma was categorized into TSR high (TSR ≥ 50%) and TSR low (TSR < 50%) using both AI- and human pathology–based methods. The AI-based TSR-high subgroup exhibited notably shorter metastasis-free survival (MFS) with a statistical significance of P = .029. Interestingly, pathologist-determined TSR subgroups lacked statistical significance in recurrence-free survival, MFS, and overall survival (P > .05). Density-based spatial clustering of applications with noise analysis identified the following 2 distinct TSL clusters: TSL1 and TSL2. TSL2 showed significantly shorter recurrence-free survival (P = .045) and markedly reduced MFS (P < .001) compared with TSL1. TSL classification appears to offer better prognostic discrimination than traditional TSR evaluation in MCC. TSL can be reliably calculated using an AI-based classification framework and predict various prognostic features of MCC.

背景:肿瘤间质比(TSR)已被认为是各种实体瘤中有价值的预后指标。本研究旨在利用基于人工智能(AI)的基质景观参数化研究梅克尔细胞癌(MCC)中TSR的临床病理学相关性,并验证我们的AI模型生成的TSR评分与人工评估的TSR评分。WSI首先被分割成128x128像素的 "小块",然后由一个新颖的框架进行分类,该框架被称为Pre-TumOr And STroma(Pre-TOAST)和TOAST,其输出等于小块代表肿瘤细胞而非基质的概率。在每张切片的 50 个区域中,对每个区域的 50 个微型斑块进行分层随机抽样。TSR和肿瘤-基质景观(TSL)参数采用最大似然法估算:受试者操作特征曲线(ROC)显示,Pre-TOAST 在区分肿瘤细胞、胶原基质和淋巴细胞等相关类别(COI)与出血、间隙和坏死等非相关类别(Non-COI)方面的曲线下面积(AUC)为 1.00。TOAST 区分肿瘤细胞和相关基质的 AUC 为 0.93。MCC 基质分为 TSR 高(TSR≥50%)和 TSR 低(TSR0.05)两类。基于密度的带噪声应用空间聚类(DBSCAN)分析确定了两个不同的肿瘤-基质景观(TSL)聚类:TSL1和TSL2。TSL2的RFS明显缩短(p=0.045),MFS明显降低(p结论:在MCC中,TSL分类似乎比传统的TSR评估具有更好的预后判别能力。使用基于人工智能的分类框架可以可靠地计算TSL,并预测MCC的各种预后特征。
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Laboratory Investigation
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