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LAG-3 Expression, γδ-T cell/MHC-I Interactions and Prognosis in Merkel Cell Carcinoma. 梅克尔细胞癌中的 LAG-3 表达、γδ-T 细胞/MHC-I 相互作用和预后
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-11-05 DOI: 10.1016/j.labinv.2024.102178
Jonathan Lai, Vrinda Madan, Aasheen Qadri, Ludmila Danilova, Long Yuan, Victoria Jacobs, Aleksandra Ogurtsova, Logan L Engle, Joel C Sunshine

Merkel Cell Carcinoma (MCC) is an aggressive cutaneous malignancy with a poor prognosis. One of the major mechanisms of immune evasion in MCC involves downregulation of MHC-I. Anti-PD-1/PD-L1 checkpoint inhibitors (CKIs) have revolutionized treatment for MCC, producing objective responses in ∼50% of patients, and are now standard of care; however, a substantial proportion of patients either fail to respond or develop resistance to CKIs. Given these recent successes, identification of other targetable immune checkpoints in the MCC tumor microenvironment (TME) is of great interest. Additionally, γ-delta (γδ) T cells may play critical roles in the response to MHC-I deficient cancers; therefore, evaluating γδ-T cells as a prognostic biomarker is warranted. We characterized the expression of PD-L1, PD-1, CD3, CD8, LAG-3, MHC-I, and γδ-T cells by IHC in a pre-immunotherapy retrospective cohort of 54 cases of MCC, and quantified expression levels and marker density via HALO. The increased density of LAG-3 and γδ-T cells correlated with other markers of an inflamed TME, with significant positive associations across all six markers (p<.002). Reflective of their putative role in the response to MHC-I suppressed cancers, cases with low HLA-I density showed a trend towards a higher ratio of γδ-T cells:CD3+ T cells (Spearman's r=-0.1582, p=0.21). Importantly, high CD3 density (HR=0.23, p=0.002), LAG-3 density (HR=0.47, p=0.037), γδ-T cell density (HR=0.26, p=0.02), and CD8 density (HR=0.27, p=0.03) showed associations with improved progression-free survival. Conditional tree analysis demonstrated that high CD8 and TCRδ expression were non-significant predictors of improved PFS and OS. Overall, LAG-3 is expressed in MCC infiltrates and is prognostic in pre-immunotherapy MCC, suggesting a potential role for LAG-3 inhibition in MCC. Additionally, CD8 and γδ-T cells may play a critical role in the response to MCC, and γδ-T cell density may represent a novel biomarker in MCC.

梅克尔细胞癌(MCC)是一种侵袭性皮肤恶性肿瘤,预后较差。MCC 免疫逃避的主要机制之一涉及 MHC-I 的下调。抗PD-1/PD-L1检查点抑制剂(CKIs)彻底改变了MCC的治疗,使50%的患者产生了客观反应,现已成为标准治疗方法;然而,相当一部分患者对CKIs没有反应或产生了耐药性。鉴于最近取得的这些成功,在 MCC 肿瘤微环境(TME)中识别其他可靶向的免疫检查点引起了极大的兴趣。此外,γ-δ(γδ)T 细胞可能在对 MHC-I 缺乏的癌症的反应中发挥关键作用;因此,有必要评估作为预后生物标志物的γδ-T 细胞。我们在54例MCC免疫治疗前回顾性队列中通过IHC鉴定了PD-L1、PD-1、CD3、CD8、LAG-3、MHC-I和γδ-T细胞的表达,并通过HALO量化了表达水平和标记物密度。LAG-3和γδ-T细胞密度的增加与发炎的TME的其他标记物相关,所有六种标记物都有显著的正相关性(p
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引用次数: 0
Machine Vision–Detected Peritumoral Lymphocytic Aggregates Are Associated With Disease-Free Survival in Patients With Papillary Thyroid Carcinoma 机器视觉检测到的瘤周淋巴细胞聚集与甲状腺乳头状癌患者的无病生存率有关
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-11-04 DOI: 10.1016/j.labinv.2024.102168
Shayan Monabbati , Pingfu Fu , Sylvia L. Asa , Tilak Pathak , Joseph E. Willis , Qiuying Shi , Anant Madabhushi
Papillary thyroid carcinoma (PTC) is the most prevalent form of thyroid cancer, with a disease recurrence rate of around 20%. Lymphoid formations, which occur in nonlymphoid tissues during chronic inflammatory, infectious, and immune responses, have been linked with tumor suppression. Lymphoid aggregates potentially enhance the body’s antitumor response, offering an avenue for attracting tumor-infiltrating lymphocytes and fostering their coordination. Increasing evidence highlights the role of lymphoid aggregate density in managing tumor invasion and metastasis, with a favorable impact noted on overall and disease-free survival (DFS) across various cancer types. In this study, we present a machine vision model to predict recurrence in different histologic subtypes of PTC using measurements related to peritumoral lymphoid aggregate density. We demonstrated that quantifying peritumoral lymphocytic presence not only is associated with better prognosis but also, along with tumor-infiltrating lymphocytes within the tumor, adds additional prognostic value in the absence of well-known second mutations including TERT. Annotations of peritumoral lymphoid aggregates on 171 well-differentiated PTCs in the Cancer Genome Atlas Thyroid Carcinoma (TCGA-THCA) data set were used to train a deep-learning model to predict regions of lymphoid aggregates across the entire tissue. The fractional area of the tissue regions covered by these lymphocytes was dichotomized to determine the following 2 risk groups: a significant and low density of peritumoral lymphocytes. DFS prognosticated using these risk groups via the Kaplan-Meier analysis revealed a hazard ratio (HR) of 2.51 (95% CI: 2.36, 2.66), tested on 170 new patients also from the TCGA-THCA data set. The prognostic performance of peritumoral lymphocyte aggregate density was compared against the univariate Kaplan-Meier analysis of DFS using the fractional area of intratumoral lymphocytes within the primary tumor with an HR of 2.04 (95% CI: 1.89, 2.19). Combining the lymphocyte features in and around the tumor yielded a statistically significant improvement in prognostic performance (HR, 3.17 [95% CI: 3.02, 3.32]) on training and were independently evaluated against 62 patients outside TCGA-THCA with an HR of 2.44 (95% CI: 2.19, 2.69). Multivariable Cox regression analysis on the validation set revealed that the density of peritumoral and intratumoral lymphocytes was prognostic independent of histologic subtype with a concordance index of 0.815.
甲状腺乳头状癌(PTC)是最常见的甲状腺癌,复发率约为20%。在慢性炎症、感染和免疫反应过程中,非淋巴组织中出现的淋巴样形成与肿瘤抑制有关。淋巴聚集体有可能增强机体的抗肿瘤反应,为吸引肿瘤浸润淋巴细胞(TILs)并促进其协调提供了途径。越来越多的证据表明,淋巴细胞聚集密度在控制肿瘤侵袭和转移方面发挥着重要作用,并对各种癌症类型的总生存期和无病生存期(DFS)产生了有利影响。在这项工作中,我们提出了一种机器视觉模型,利用与瘤周淋巴聚集密度相关的测量值预测不同组织学亚型 PTC 的复发情况。我们证明,量化瘤周淋巴细胞的存在不仅与更好的预后相关,而且在没有包括 TERT 在内的众所周知的二次突变的情况下,与肿瘤内的 TIL 一起增加了额外的预后价值。TCGA-THCA 数据集中 171 个分化良好的 PTC 的瘤周淋巴聚集注释被用来训练一个深度学习模型,以预测整个组织的淋巴聚集区域。对这些淋巴细胞覆盖的组织区域的面积分数进行二分,以确定两个风险组:瘤周淋巴细胞密度高和低。通过 Kaplan-Meier (KM) 分析,利用这些风险组别对 DFS 进行预后预测,结果显示危险比 (HR)=2.51 (95% 置信区间 (CI):2.36, 2.66),该结果也在 TCGA-THCA 数据集中的 170 名新患者中进行了测试。瘤周淋巴细胞聚集密度的预后效果与使用原发肿瘤内瘤周淋巴细胞的分数面积对 DFS 进行的单变量 KM 分析进行了比较,HR = 2.04 (95% CI: 1.89, 2.19)。将肿瘤内和肿瘤周围的淋巴细胞特征结合在一起,在统计学上显著提高了预后效果(HR = 3.17 (95% CI: 3.02, 3.32)),并与 TCGA-THCA 以外的 62 例患者进行了独立评估,HR = 2.44 (95% CI: 2.19, 2.69)。对验证集进行的多变量 Cox 回归分析表明,瘤周和瘤内淋巴细胞密度是独立于组织学亚型的预后指标,C 指数 = 0.815。
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引用次数: 0
Leptin modulates ovarian granulosa cell apoptosis by regulating telomerase activity and telomere length in polycystic ovary syndrome. 瘦素通过调节端粒酶活性和端粒长度调节多囊卵巢综合征的卵巢颗粒细胞凋亡
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-11-02 DOI: 10.1016/j.labinv.2024.102169
Feijing Zhou, Zhimin Sun, Luyao Cheng, Yuezhi Dong

Leptin (LEP) is implicated in the pathogenesis of polycystic ovary syndrome (PCOS). This study investigates the mechanism of LEP in PCOS. The baseline information of 80 PCOS patients and matched controls was analyzed, with serum and follicular fluid (FF) LEP and LEP receptor (LEPR) levels, telomerase activity, and relative telomere length (TL) measured. The correlation of FF LEP with telomerase activity and TL was analyzed. The viability and apoptosis of KGN cells (the ovarian granulosa cells) treated with gradient LEP were assessed. LEP-LEPR interaction was examined. LEPR, c-MYC, and TERT levels and c-MYC protein expression in the TERT promoter region were determined. Nuclear c-MYC translocation was detected. LEP was upregulated in sera and FF of PCOS patients. FF LEP positively-correlated with telomerase activity and TL. Low-concentration LEP facilitated KGN cell proliferation and high-concentration LEP dose-dependently suppressed cell proliferation, promoted apoptosis, upregulated LEPR and increased telomerase activity and relative TL. LEP-LEPR interaction upregulated c-MYC and facilitated its nuclear accumulation. c-MYC enrichment in the TERT promoter region upregulated TERT, altering telomerase activity and TL and inducing cell apoptosis. Briefly, LEP/LEPR activate c-MYC, modulate TERT expression, and increase telomerase activity and TL, thus inducing ovarian granulosa cell apoptosis and participating in PCOS.

瘦素(LEP)与多囊卵巢综合征(PCOS)的发病机制有关。本研究探讨了 LEP 在多囊卵巢综合征中的作用机制。研究分析了80名多囊卵巢综合征患者和匹配对照组的基线信息,并测量了血清和卵泡液(FF)中的瘦素和瘦素受体(LEPR)水平、端粒酶活性和相对端粒长度(TL)。分析了FF LEP与端粒酶活性和端粒长度的相关性。评估了经梯度 LEP 处理的 KGN 细胞(卵巢颗粒细胞)的活力和凋亡情况。研究了 LEP-LEPR 的相互作用。测定了 LEPR、c-MYC 和 TERT 的水平以及 TERT 启动子区域的 c-MYC 蛋白表达。检测了核c-MYC转位。多囊卵巢综合征患者血清和卵巢滤泡中的 LEP 上调。FF LEP与端粒酶活性和TL呈正相关。低浓度LEP促进KGN细胞增殖,高浓度LEP剂量依赖性地抑制细胞增殖,促进细胞凋亡,上调LEPR,提高端粒酶活性和相对端粒酶活性。c-MYC 在 TERT 启动子区域的富集上调了 TERT,改变了端粒酶活性和 TL,并诱导细胞凋亡。简而言之,LEP/LEPR可激活c-MYC,调节TERT的表达,提高端粒酶活性和TL,从而诱导卵巢颗粒细胞凋亡,参与多囊卵巢综合征的发生。
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引用次数: 0
Deciphering the Intricate Relationship Between Macrophages, Pigmentation, and Prognosis in Uveal Melanoma 破解葡萄膜黑色素瘤中巨噬细胞、色素沉着和预后之间的复杂关系。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-11-02 DOI: 10.1016/j.labinv.2024.102167
Jayanti Jha , Mithalesh Kumar Singh , Lata Singh , Neelam Pushker , Aanchal Kakkar , Rachna Meel , Neiwete Lomi , Sameer Bakhshi , Tapas Chandra Nag , Chanda Panwar , Seema Sen , Seema Kashyap
High pigmentation and the abundance of M2 macrophages have been identified as negative predictors in uveal melanoma (UM). Risk factors associated with UM that are prevalent in high-risk White populations are still present, although less common, in relatively low-risk Asian populations. Research indicates that proangiogenic M2 macrophages and monosomy 3 play significant roles in UM progression. Our aim was to investigate the impact of tumor-associated macrophages in UM and examine their correlation with monosomy 3 and pigmentation. Transmission electron microscopy was used to analyze the morphology of macrophages in UM. Forty UM samples underwent fluorescent in situ hybridization for monosomy 3 identification. Immunohistochemistry was done to assess M2/M1 macrophages on 82 UM tissue samples. IL-10 and IL-12 expressions were quantified in UM serum samples by enzyme-linked immunosorbent assay. The expression of all markers was correlated with pigmentation markers (tyrosinase-related protein 1, tyrosinase-related protein 2, silver protein, and microphthalmia-associated transcription factor). Prognostic outcomes were determined using the Cox proportional hazard model and log-rank tests. Increased expression of M2/M1 macrophages was observed in 31 UM cases, which correlated with the high expression of pigmentation markers. IL-10 concentration was high in UM cases. Monosomy 3 was evident in 50% of UM cases and significantly associated with increased immunoexpression of M2/M1 macrophages and pigmentation markers. Reduced metastasis-free survival was observed in patients with UM with high M2/M1 macrophage expression (P = .001). High pigmentation and increased M2 macrophage density could impact the tumor microenvironment in UM. This could contribute to ineffective antitumor immune responses in patients with UM. Our findings suggest avenues for developing novel therapeutic approaches to counteract these immunosuppressive effects in UM.
高色素沉着和大量的 M2 巨噬细胞已被确定为葡萄膜黑色素瘤(UM)的负面预测因素。在高风险的白人人群中普遍存在的与葡萄膜黑色素瘤相关的风险因素,在风险相对较低的亚裔人群中仍然存在,但并不常见。研究表明,促血管生成的 M2 巨噬细胞和单体 3 在黑色素瘤的发展过程中起着重要作用。我们的目的是研究肿瘤相关巨噬细胞对脐带癌的影响,并探讨其与单体3型和色素沉着的相关性。TEM 被用来分析 UM 中巨噬细胞的形态。对 40 份 UM 样本进行 FISH 检测,以确定单体 3 型。对 82 个 UM 组织样本的 M2/M1 巨噬细胞进行了免疫组化评估。用酶联免疫吸附法对 UM 血清样本中 IL-10 和 IL-12 的表达进行了量化。所有标记物的表达均与色素标记物(TYRP1、TYRP2、SILV和MITF)相关。采用 Cox 比例危险模型和对数秩检验确定预后结果。在 31 例 UM 病例中观察到 M2/M1 巨噬细胞表达增加,这与色素沉着标记物的高表达相关。UM病例中IL-10浓度较高。50%的 UM 病例中存在明显的单体 3,并且与 M2/M1 巨噬细胞和色素标记物的免疫表达增加有显著关联。在 M2/M1 巨噬细胞高表达的 UM 患者中观察到 MFS 降低(p=0.001)。高色素沉着和 M2 巨噬细胞密度增加可能会影响 UM 的肿瘤微环境。这可能会导致 UM 患者的抗肿瘤免疫反应无效。我们的发现为开发新型治疗方法提供了途径,以抵消 UM 的这些免疫抑制效应。
{"title":"Deciphering the Intricate Relationship Between Macrophages, Pigmentation, and Prognosis in Uveal Melanoma","authors":"Jayanti Jha ,&nbsp;Mithalesh Kumar Singh ,&nbsp;Lata Singh ,&nbsp;Neelam Pushker ,&nbsp;Aanchal Kakkar ,&nbsp;Rachna Meel ,&nbsp;Neiwete Lomi ,&nbsp;Sameer Bakhshi ,&nbsp;Tapas Chandra Nag ,&nbsp;Chanda Panwar ,&nbsp;Seema Sen ,&nbsp;Seema Kashyap","doi":"10.1016/j.labinv.2024.102167","DOIUrl":"10.1016/j.labinv.2024.102167","url":null,"abstract":"<div><div>High pigmentation and the abundance of M2 macrophages have been identified as negative predictors in uveal melanoma (UM). Risk factors associated with UM that are prevalent in high-risk White populations are still present, although less common, in relatively low-risk Asian populations. Research indicates that proangiogenic M2 macrophages and monosomy 3 play significant roles in UM progression. Our aim was to investigate the impact of tumor-associated macrophages in UM and examine their correlation with monosomy 3 and pigmentation. Transmission electron microscopy was used to analyze the morphology of macrophages in UM. Forty UM samples underwent fluorescent in situ hybridization for monosomy 3 identification. Immunohistochemistry was done to assess M2/M1 macrophages on 82 UM tissue samples. IL-10 and IL-12 expressions were quantified in UM serum samples by enzyme-linked immunosorbent assay. The expression of all markers was correlated with pigmentation markers (tyrosinase-related protein 1, tyrosinase-related protein 2, silver protein, and microphthalmia-associated transcription factor). Prognostic outcomes were determined using the Cox proportional hazard model and log-rank tests. Increased expression of M2/M1 macrophages was observed in 31 UM cases, which correlated with the high expression of pigmentation markers. IL-10 concentration was high in UM cases. Monosomy 3 was evident in 50% of UM cases and significantly associated with increased immunoexpression of M2/M1 macrophages and pigmentation markers. Reduced metastasis-free survival was observed in patients with UM with high M2/M1 macrophage expression (<em>P</em> = .001). High pigmentation and increased M2 macrophage density could impact the tumor microenvironment in UM. This could contribute to ineffective antitumor immune responses in patients with UM. Our findings suggest avenues for developing novel therapeutic approaches to counteract these immunosuppressive effects in UM.</div></div>","PeriodicalId":17930,"journal":{"name":"Laboratory Investigation","volume":"104 12","pages":"Article 102167"},"PeriodicalIF":5.1,"publicationDate":"2024-11-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142567313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nup210 Promotes Colorectal Cancer Progression by Regulating Nuclear Plasma Transport Nup210通过调节核浆转运促进结直肠癌的进展。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-11-01 DOI: 10.1016/j.labinv.2024.102149
Fangyi Han , Xingdi Fan , Minxuan Hu , Jing Wen , Junrao Wang , Dan Zhang , Shuyang Wang , Yanqing Ding , Yaping Ye , Hongli Jiao
The nuclear pore complex (NPC) regulates nucleoplasmic transport, transcription, and genomic integrity in eukaryotic cells. However, little is known about how NPC works in cancer. In this study, we investigated the role of the nuclear pore protein 210 (Nucleoporin 210, Nup210) in colorectal cancer (CRC). Bioinformatics analysis revealed that the expression of Nup210 was increased in CRC and was associated with poor patient prognosis, but it was not a statistically significant independent prognostic factor. Moreover, knockdown of Nup210 in CRC cells inhibited the proliferation, invasion, and metastasis of CRC cells in vivo and in vitro. Additionally, nuclear size and nuclear plasma material transport capacity decreased along with the number and density of NPCs on the surface of CRC cells when Nup210 expression was inhibited. Furthermore, Nup210 required nuclear localization sequences (NLS) to localize to the nuclear membrane surface and interact with importin-α/β, which in turn affected the transit of nuclear plasma material. Importazole, a small molecule inhibitor of importin, along with therapy that targets the Nup210 protein is anticipated to be a novel strategy for CRC treatment. Their combination may be able to more effectively lower CRC tumor load. In conclusion, Nup210 modulates cellular nucleoplasmic transport capability and cell surface NPC density via NLS, thus promoting CRC progression. This discovery validates the molecular function of NPC in the development of CRC and provides a theoretical foundation for NPC-regulated nuclear import targeting as a therapeutic strategy for CRC.
核孔复合体(NPC)调节真核细胞中的核质运输、转录和基因组完整性。然而,人们对 NPC 在癌症中的作用知之甚少。本研究调查了核孔蛋白 210(Nucleoporin 210,Nup210)在结直肠癌(CRC)中的作用。生物信息学分析表明,Nup210在CRC中的表达增加,与患者的不良预后有关,但它并不是一个有统计学意义的独立预后因素。此外,在 CRC 细胞中敲除 Nup210 能抑制 CRC 细胞在体内和体外的增殖、侵袭和转移。此外,抑制 Nup210 表达后,CRC 细胞的核大小、核浆物质运输能力以及表面 NPC 的数量和密度都会下降。此外,Nup210需要核定位序列(NLS)才能定位到核膜表面并与导入素α/β相互作用,进而影响核浆物质的转运。进口蛋白小分子抑制剂 Importazole 与针对 Nup210 蛋白的疗法有望成为治疗 CRC 的新策略。它们的组合可能会更有效地降低 CRC 肿瘤负荷。总之,Nup210 通过 NLS 调节细胞核浆转运能力和细胞表面 NPC 密度,从而促进 CRC 的进展。这一发现验证了 NPC 在 CRC 发展过程中的分子功能,并为将 NPC 调控的核导入靶向作为 CRC 的治疗策略提供了理论基础。
{"title":"Nup210 Promotes Colorectal Cancer Progression by Regulating Nuclear Plasma Transport","authors":"Fangyi Han ,&nbsp;Xingdi Fan ,&nbsp;Minxuan Hu ,&nbsp;Jing Wen ,&nbsp;Junrao Wang ,&nbsp;Dan Zhang ,&nbsp;Shuyang Wang ,&nbsp;Yanqing Ding ,&nbsp;Yaping Ye ,&nbsp;Hongli Jiao","doi":"10.1016/j.labinv.2024.102149","DOIUrl":"10.1016/j.labinv.2024.102149","url":null,"abstract":"<div><div>The nuclear pore complex (NPC) regulates nucleoplasmic transport, transcription, and genomic integrity in eukaryotic cells. However, little is known about how NPC works in cancer. In this study, we investigated the role of the nuclear pore protein 210 (Nucleoporin 210, Nup210) in colorectal cancer (CRC). Bioinformatics analysis revealed that the expression of Nup210 was increased in CRC and was associated with poor patient prognosis, but it was not a statistically significant independent prognostic factor. Moreover, knockdown of Nup210 in CRC cells inhibited the proliferation, invasion, and metastasis of CRC cells in vivo and in vitro. Additionally, nuclear size and nuclear plasma material transport capacity decreased along with the number and density of NPCs on the surface of CRC cells when Nup210 expression was inhibited. Furthermore, Nup210 required nuclear localization sequences (NLS) to localize to the nuclear membrane surface and interact with importin-α/β, which in turn affected the transit of nuclear plasma material. Importazole, a small molecule inhibitor of importin, along with therapy that targets the Nup210 protein is anticipated to be a novel strategy for CRC treatment. Their combination may be able to more effectively lower CRC tumor load. In conclusion, Nup210 modulates cellular nucleoplasmic transport capability and cell surface NPC density via NLS, thus promoting CRC progression. This discovery validates the molecular function of NPC in the development of CRC and provides a theoretical foundation for NPC-regulated nuclear import targeting as a therapeutic strategy for CRC.</div></div>","PeriodicalId":17930,"journal":{"name":"Laboratory Investigation","volume":"104 11","pages":"Article 102149"},"PeriodicalIF":5.1,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142406581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Epigenomic and Transcriptomic Profiling of Solitary Fibrous Tumors Identifies Site-Specific Patterns and Candidate Genes Regulated by DNA Methylation 单发纤维性肿瘤的表观基因组和转录组分析确定了受DNA甲基化调控的特定位点模式和候选基因。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-11-01 DOI: 10.1016/j.labinv.2024.102146
Hannah C. Beird , Jeffrey M. Cloutier , Nalan Gokgoz , Christopher Eeles , Anthony M. Griffin , Davis R. Ingram , Khalida M. Wani , Rossana Lazcano Segura , Luca Cohen , Carl Ho , Jay S. Wunder , Irene L. Andrulis , P. Andrew Futreal , Benjamin Haibe-Kains , Alexander J. Lazar , Wei-Lien Wang , Joanna Przybyl , Elizabeth G. Demicco
A solitary fibrous tumor (SFT) is a rare mesenchymal neoplasm that can arise at any anatomical site and is characterized by recurrent NAB2::STAT6 fusions and metastatic progression in 10% to 30%. The cell of origin has not been identified. Despite some progress in understanding the contribution of heterogeneous fusion types and secondary mutations to SFT biology, epigenetic alterations in extrameningeal SFT remain largely unexplored, and most sarcoma research to date has focused on the use of methylation profiling for tumor classification. We interrogated genome-wide DNA methylation in 79 SFTs to identify informative epigenetic changes. RNA-seq data from targeted panels and data from the Cancer Genome Atlas (TCGA) were used for orthogonal validation of selected findings. In unsupervised clustering analysis, the top 500 most variable cytosine-guanine sites segregated SFTs by primary anatomical site. Differentially methylated genes associated with the primary SFT site included EGFR; TBX15; multiple HOX genes; and their cofactors EBF1, EBF3, and PBX1; as well as RUNX1 and MEIS1. Of the 20 DMGs interrogated on the RNA-seq panel, 12 were significantly differentially expressed according to site. However, except TBX15, most of these also showed differential expression according to NAB2::STAT6 fusion type, suggesting that the fusion oncogene contributes to the transcriptional regulation of these genes. Transcriptomic data confirmed an inverse correlation between gene methylation and the expression of TBX15 in both SFT and TCGA sarcomas. TBX15 also showed differential mRNA expression and 5′ UTR methylation between tumors in different anatomical sites in TCGA data. In all analyses, TBX15 methylation and mRNA expression retained the strongest association with tissue of origin in SFT and other sarcomas, suggesting a possible marker to distinguish metastatic tumors from new primaries without genomic profiling. Epigenetic signatures may further help to identify SFT progenitor cells at different anatomical sites.
孤立性纤维瘤(SFT)是一种罕见的间叶肿瘤,可发生于任何解剖部位,其特点是复发性 NAB2::STAT6 融合,10%-30% 的肿瘤会发生转移。其起源细胞尚未确定。尽管在了解异质融合类型和继发性突变对 SFT 生物学的贡献方面取得了一些进展,但脑膜外 SFT 的表观遗传学改变在很大程度上仍未得到探索,迄今为止,大多数肉瘤研究都集中在使用甲基化分析进行肿瘤分类。我们对 79 例 SFT 的全基因组 DNA 甲基化进行了研究,以确定有参考价值的表观遗传学变化。来自靶向研究小组的RNA-seq数据和来自癌症基因组图谱(TCGA)的数据被用于对所选研究结果进行正交验证。在无监督聚类分析中,前 500 个变化最大的 CpGs 按主要解剖部位分离出 SFT。与原发SFT部位相关的差异甲基化基因(DMGs)包括表皮生长因子受体、TBX15、多个HOX基因及其辅助因子EBF1、EBF3和PBX1,以及RUNX1和MEIS1。在RNA-seq面板上检测的20个DMGs中,有12个在不同位点有显著差异表达。然而,除了 TBX15 外,其中大多数也根据 NAB2::STAT6 融合类型显示出差异表达,这表明融合癌基因有助于这些基因的转录调控。转录组数据证实,在 SFT 和 TCGA 肉瘤中,基因甲基化与 TBX15 的表达呈反相关。在 TCGA 数据中,位于不同解剖部位的肿瘤之间,TBX15 的 mRNA 表达和 5' UTR 甲基化也存在差异。在所有分析中,TBX15 的甲基化和 mRNA 表达与 SFT 和其他肉瘤的原发组织的关联性最强,这表明在没有基因组图谱分析的情况下,TBX15 可能是区分转移性肿瘤和新原发肿瘤的标记物。表观遗传特征可进一步帮助识别不同解剖部位的SFT祖细胞。
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引用次数: 0
Highly-Multiplexed Immunofluorescence PhenoCycler Panel for Murine FFPE Yields Insight into Tumor Microenvironment Immunoengineering. 用于小鼠 FFPE 的高复用免疫荧光 PhenoCycler 面板可深入了解肿瘤微环境免疫工程。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-10-25 DOI: 10.1016/j.labinv.2024.102165
Sachin S Surwase, Xin Ming M Zhou, Kathryn M Luly, Qingfeng Zhu, Robert A Anders, Jordan J Green, Stephany Y Tzeng, Joel C Sunshine

Spatial proteomics profiling is an emerging set of technologies that has the potential to elucidate the cell types, interactions, and molecular signatures that make up complex tissue microenvironments, with applications in the study of cancer, immunity, and much more. An emerging technique in the field is Co-Detection-by-indEXing (CODEX), recently renamed as the PhenoCycler system. This is a highly-multiplexed immunofluorescence imaging technology that relies on oligonucleotide-barcoded antibodies and cyclic immunofluorescence to visualize many antibody markers in a single specimen while preserving tissue architecture. Existing PhenoCycler panels are primarily designed for fresh-frozen tissues. Formalin-fixed paraffin-embedded (FFPE) blocks offer several advantages in preclinical research, but few antibody clones have been identified in this setting for PhenoCycler imaging. Here, we present a novel PhenoCycler panel of 28 validated antibodies for murine FFPE tissues. We describe our workflow for selecting and validating clones, barcoding antibodies, designing our panel, and performing multiplex imaging. We further detail our analysis pipeline for comparing marker expressions, clustering and phenotyping single-cell proteomics data, and quantifying spatial relationships. We then apply our panel and analysis protocol to profile the effects of three gene-delivery nanoparticle formulations, in combination with systemic anti-PD1, on the murine melanoma tumor immune microenvironment. Intralesional delivery of genes expressing the costimulatory molecule 4-1BBL and the cytokine IL-12 led to a shift towards intratumoral M1 macrophage polarization and promoted closer associations between intratumoral CD8 T cells and macrophages. Delivery of IFNγ, in addition to 4-1BBL and IL-12, further increased markers of antigen presentation on tumor cells and intratumoral antigen-presenting cells but also promoted greater expression of checkpoint marker PD-L1 and closer associations between intratumoral CD8 T cells and PD-L1-expressing tumor cells. These findings help to explain the benefits of 4-1BBL and IL-12 delivery while offering additional mechanistic insights into the limitations of IFNγ therapeutic efficacy.

空间蛋白质组学分析是一套新兴技术,有可能阐明构成复杂组织微环境的细胞类型、相互作用和分子特征,可应用于癌症、免疫等方面的研究。该领域的一项新兴技术是 "共沉淀检测(CODEX)",最近更名为 "PhenoCycler 系统"。这是一种高度复用的免疫荧光成像技术,依靠寡核苷酸条形码抗体和循环免疫荧光,在保留组织结构的同时,对单个标本中的多种抗体标记进行可视化。现有的 PhenoCycler 面板主要是为新鲜冷冻组织设计的。福尔马林固定石蜡包埋(FFPE)组织块在临床前研究中具有多种优势,但很少有抗体克隆能在这种情况下用于 PhenoCycler 成像。在这里,我们展示了一个由 28 种经过验证的抗体组成的新型 PhenoCycler 面板,适用于小鼠 FFPE 组织。我们介绍了选择和验证克隆、对抗体进行条形码编码、设计面板和进行多重成像的工作流程。我们进一步详细介绍了比较标记物表达、聚类和表型单细胞蛋白质组学数据以及量化空间关系的分析流程。然后,我们应用我们的面板和分析方案来分析三种基因递送纳米粒子制剂与全身抗 PD1 联用对小鼠黑色素瘤肿瘤免疫微环境的影响。瘤内递送表达激动分子4-1BBL和细胞因子IL-12的基因会导致瘤内M1巨噬细胞极化,并促进瘤内CD8 T细胞和巨噬细胞之间更紧密的联系。除4-1BBL和IL-12外,IFNγ的递送进一步增加了肿瘤细胞和瘤内抗原递呈细胞上的抗原递呈标记物,但也促进了检查点标记物PD-L1的更高表达,并使瘤内CD8 T细胞与表达PD-L1的肿瘤细胞之间的联系更加紧密。这些发现有助于解释4-1BBL和IL-12递送的益处,同时为IFNγ疗效的局限性提供了更多的机理启示。
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引用次数: 0
Concordance of whole slide imaging and conventional light microscopy for assessment of pathologic response following neoadjuvant therapy for lung cancer. 在评估肺癌新辅助治疗后的病理反应时,全切片成像与传统光学显微镜的一致性。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-10-24 DOI: 10.1016/j.labinv.2024.102166
Julie Stein Deutsch, Daphne Wang, Krista Y Chen, Ashley Cimino-Mathews, Elizabeth D Thompson, Jaroslaw Jedrych, Robert A Anders, Edward Gabrielson, Peter B Illei, Sonali Uttam, Alexa Fiorante, Emily Cohen, Michael Fotheringham, Logan L Engle, Joel C Sunshine, Hao Wang, Dimple Pandya, Vipul Baxi, Joseph Fiore, Kurex Sidik, James Pratt, Alexander S Baras, Tricia R Cottrell, Janis M Taube

Pathologic response is an endpoint in many ongoing clinical trials for neoadjuvant regimens, including immune checkpoint blockade and chemotherapy. Whole slide scanning of glass slides generates high resolution digital images and allows for remote review and potential measurement with image analysis tools, but concordance of pathologic response assessment on digital scans compared to glass slides has yet to be evaluated. Such a validation goes beyond previous concordance studies which focused on establishing surgical pathology diagnoses, as it requires quantitative assessment of tumor, necrosis, and regression. Further, as pathologic response assessment is being used as an endpoint, such concordance studies have regulatory implications. The purpose of this study was two fold: firstly, to determine the concordance between pathologic response assessed on glass slides and on digital scans; and secondly, to determine if pathologists benefited from using measurement tools when determining pathologic response. To that end, H&E-stained glass slides from 64 non-small cell lung carcinoma specimens were visually assessed for percent residual viable tumor (%RVT). The sensitivity and specificity for digital vs. glass reads of complete pathologic response (pCR, 0% RVT) and major pathologic response (MPR, ≤10% RVT) were all >95%. When %RVT was considered as a continuous variable, intraclass correlation coefficient of digital vs. glass reads was 0.94. The visual assessments of pathologic response were supported by pathologist annotations of residual tumor and tumor bed areas. In a separate subset of H&E-stained glass slides, several measurement approaches to quantifying %RVT were performed. Pathologist estimates strongly reflected measured %RVT. This study demonstrates the high level of concordance between glass slides evaluated using light microscopy and digital whole slide images for pathologic response assessments. Pathologists did not require measurement tools to generate robust %RVT values from slide annotations. These findings have broad implications for improving clinical workflows and multisite clinical trials.

病理反应是许多正在进行的新辅助治疗方案(包括免疫检查点阻断和化疗)临床试验的终点。对玻璃载玻片进行整片扫描可生成高分辨率的数字图像,并可通过图像分析工具进行远程审查和潜在测量,但数字扫描与玻璃载玻片病理反应评估的一致性还有待评估。这种验证超越了以往侧重于确定手术病理诊断的一致性研究,因为它需要对肿瘤、坏死和消退进行定量评估。此外,由于病理反应评估被用作终点,这种一致性研究具有监管意义。本研究有两个目的:首先,确定玻璃切片和数字扫描评估的病理反应之间的一致性;其次,确定病理学家在确定病理反应时是否能从使用测量工具中获益。为此,我们对 64 份非小细胞肺癌标本的 H&E 染色玻璃切片进行了残留有活力肿瘤百分比(%RVT)的目测评估。完全病理反应(pCR,0% RVT)和主要病理反应(MPR,≤10% RVT)的数字读数与玻璃读数的灵敏度和特异性均大于 95%。当将RVT%视为连续变量时,数字读数与玻璃读数的类内相关系数为0.94。病理学家对残留肿瘤和肿瘤床区域的注释支持了对病理反应的目测评估。在单独的 H&E 染色玻璃切片子集中,采用了几种测量方法来量化%RVT。病理学家的估算结果与测量的 RVT 百分比高度吻合。这项研究表明,使用光学显微镜评估的玻璃切片与用于病理反应评估的数字全切片图像之间具有高度一致性。病理学家不需要测量工具就能根据玻片注释生成可靠的 %RVT 值。这些发现对改进临床工作流程和多点临床试验具有广泛的意义。
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引用次数: 0
Tumor necrosis factor-α-dependent inflammation upregulates high mobility group box 1 to induce tumor promotion and anti-programmed cell death protein-1 immunotherapy resistance in lung adenocarcinoma. 肿瘤坏死因子-α依赖性炎症上调高迁移率基团框1,诱导肺腺癌的肿瘤促进和抗程序性细胞死亡蛋白-1免疫疗法的抗药性。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-10-24 DOI: 10.1016/j.labinv.2024.102164
Lifei Kang, Jingjing Cao, Wenli Guo, Xiaohui Cui, Yangxuan Wei, Jiayu Zhang, Feiran Liu, Chenyang Duan, Qiang Lin, Ping Lv, Zhiyu Ni, Jing Zuo, Haitao Shen

Tumor-associated chronic lung inflammation depends on tumor necrosis factor (TNF)-α to activate several cytokines as part of an inflammatory loop, which plays a critical role in tumor progression in lung adenocarcinoma. High mobility group box 1 (HMGB1) is a cytokine that mediates inflammation. Whether TNF-α-induced inflammation regulates HMGB1 to contribute to tumor progression and promotion in lung adenocarcinoma remains unclear. Thus, human samples and a urethane-induced inflammation-driven lung adenocarcinoma (IDLA) mouse model were used to explore the involvement of HMGB1 in tumorigenesis, tumor progression, and efficacy of anti-programmed cell death protein (PD)-1 immunotherapy. High levels of HMGB1 were observed in human lung adenocarcinoma associated with poor overall survival in patients. HMGB1 upregulation was positively correlated with TNF-α-related inflammation and TIM3+ infiltration. TNF-α upregulated intracellular and extracellular HMGB1 expression to contribute to tumor promotion in A549 cells in vitro. Using a urethane-induced IDLA mouse model, we found HMGB1 upregulation was associated with increased TIM3+ T cell infiltration. Blocking TNF-α-dependent inflammation downregulated HMGB1 expression and inhibited tumorigenesis in the IDLA. Anti-PD-1 treatment alone did not inhibit tumor growth in the TNF-α-dependent IDLA, whereas anti-PD-1 combined with TNF-α blockade overcame anti-PD-1 immunotherapy resistance. Furthermore, anti-PD-1 combined with anti-HMGB1 also inhibited tumor growth in IDLA, suggesting increased HMGB1 release by TNF-α contributes to the resistance of anti-PD-1 immunotherapy in IDLA. Thus, tumor-associated TNF-α-dependent inflammation upregulated intracellular and extracellular HMGB1 expression in an inflammatory loop, contributing to tumor promotion and anti-PD-1 immunotherapy resistance in lung adenocarcinoma.

肿瘤相关的慢性肺部炎症依赖于肿瘤坏死因子(TNF)-α来激活多种细胞因子,这是炎症循环的一部分,在肺腺癌的肿瘤进展中起着关键作用。高迁移率基团框 1(HMGB1)是一种介导炎症的细胞因子。TNF-α诱导的炎症是否会调节HMGB1,从而导致肺腺癌的肿瘤进展和促进,目前仍不清楚。因此,研究人员利用人体样本和尿烷诱导的炎症驱动肺腺癌(IDLA)小鼠模型,探讨了HMGB1参与肿瘤发生、肿瘤进展和抗程序性细胞死亡蛋白(PD)-1免疫疗法疗效的情况。在人类肺腺癌中观察到,高水平的HMGB1与患者总生存率低有关。HMGB1的上调与TNF-α相关炎症和TIM3+浸润呈正相关。TNF-α 上调细胞内和细胞外 HMGB1 的表达,有助于体外促进 A549 细胞的肿瘤生长。通过使用尿烷诱导的IDLA小鼠模型,我们发现HMGB1的上调与TIM3+ T细胞浸润的增加有关。阻断 TNF-α 依赖性炎症会下调 HMGB1 的表达并抑制 IDLA 的肿瘤发生。单用抗-PD-1治疗并不能抑制TNF-α依赖性IDLA的肿瘤生长,而抗-PD-1联合TNF-α阻断则能克服抗-PD-1免疫疗法的耐药性。此外,抗PD-1联合抗HMGB1也能抑制IDLA的肿瘤生长,这表明TNF-α增加HMGB1的释放是IDLA对抗PD-1免疫疗法耐药的原因之一。因此,肿瘤相关的TNF-α依赖性炎症在炎症循环中上调了细胞内和细胞外HMGB1的表达,导致了肺腺癌的肿瘤促进和抗PD-1免疫疗法的耐药性。
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引用次数: 0
Real-World Performance of Integrative Clinical Genomics in Pediatric Precision Oncology 综合临床基因组学在儿科精准肿瘤学中的实际应用。
IF 5.1 2区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2024-10-21 DOI: 10.1016/j.labinv.2024.102161
Petra Pokorna , Hana Palova , Sona Adamcova , Robin Jugas , Dagmar Al Tukmachi , Michal Kyr , Dana Knoflickova , Katerina Kozelkova , Vojtech Bystry , Sona Mejstrikova , Tomas Merta , Karolina Trachtova , Eliska Podlipna , Peter Mudry , Zdenek Pavelka , Viera Bajciova , Pavel Tinka , Marie Jarosova , Tina Catela Ivkovic , Sibylle Madlener , Ondrej Slaby
Despite significant improvement in the survival of pediatric patients with cancer, treatment outcomes for high-risk, relapsed, and refractory cancers remain unsatisfactory. Moreover, prolonged survival is frequently associated with long-term adverse effects due to intensive multimodal treatments. Accelerating the progress of pediatric oncology requires both therapeutic advances and strategies to mitigate the long-term cytotoxic side effects, potentially through targeting specific molecular drivers of pediatric malignancies. In this report, we present the results of integrative genomic and transcriptomic profiling of 230 patients with malignant solid tumors (the “primary cohort”) and 18 patients with recurrent or otherwise difficult-to-treat nonmalignant conditions (the “secondary cohort”). The integrative workflow for the primary cohort enabled the identification of clinically significant single nucleotide variants, small insertions/deletions, and fusion genes, which were found in 55% and 28% of patients, respectively. For 38% of patients, molecularly informed treatment recommendations were made. In the secondary cohort, known or potentially driving alteration was detected in 89% of cases, including a suspected novel causal gene for patients with inclusion body infantile digital fibromatosis. Furthermore, 47% of findings also brought therapeutic implications for subsequent management. Across both cohorts, changes or refinements to the original histopathological diagnoses were achieved in 4% of cases. Our study demonstrates the efficacy of integrating advanced genomic and transcriptomic analyses to identify therapeutic targets, refine diagnoses, and optimize treatment strategies for challenging pediatric and young adult malignancies and underscores the need for broad implementation of precision oncology in clinical settings.
尽管儿童癌症患者的生存率有了明显提高,但高风险、复发和难治性癌症的治疗效果仍不尽如人意。此外,生存期的延长往往与密集的多模式治疗导致的长期不良反应有关。要加快儿科肿瘤学的发展,既需要治疗方法的进步,也需要减轻长期细胞毒副作用的策略,可能的方法是针对儿科恶性肿瘤的特定分子驱动因素。在本报告中,我们介绍了对 230 名恶性实体瘤患者("原发群组")和 18 名复发或其他难以治疗的非恶性肿瘤患者("继发群组")进行基因组和转录组综合分析的结果。原发群组的整合工作流程能够鉴定出具有临床意义的单核苷酸变异、小插入/缺失和融合基因,分别在 55% 和 28% 的患者中发现了这些变异。对 38% 的患者提出了分子治疗建议。在次级队列中,89%的病例检测到了已知或潜在的驱动基因改变,其中包括包涵体婴儿数字纤维瘤病患者的疑似新致病基因。此外,47%的研究结果还对后续治疗产生了影响。在两个队列中,有4%的病例改变或完善了原始组织病理学诊断。我们的研究表明,整合先进的基因组学和转录组学分析可有效确定治疗靶点、完善诊断并优化治疗策略,用于治疗具有挑战性的儿童和青少年恶性肿瘤,同时也强调了在临床环境中广泛实施精准肿瘤学的必要性。
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Laboratory Investigation
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