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Subdomains of the Helicobacter pylori Cag T4SS outer membrane core complex exhibit structural independence 幽门螺旋杆菌 Cag T4SS 外膜核心复合体的子域在结构上具有独立性
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-17 DOI: 10.26508/lsa.202302560
Jacquelyn R. Roberts, Sirena C Tran, A. Frick-Cheng, Kaeli N. Bryant, Chiamaka D Okoye, W. H. McDonald, T. Cover, M. Ohi
Structural and proteomic analyses of H. pylori Cag T4SSs purified from deletion mutants highlight the unexpected structural independence between the OMC and PR, two major subdomains of this complex.
从缺失突变体中纯化的幽门螺杆菌 Cag T4SS 的结构和蛋白质组分析突显了该复合物的两个主要亚域 OMC 和 PR 之间意想不到的结构独立性。
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引用次数: 0
Frataxin deficiency shifts metabolism to promote reactive microglia via glucose catabolism 缺乏 Frataxin 会改变新陈代谢,通过葡萄糖分解促进反应性小胶质细胞的生长
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-17 DOI: 10.26508/lsa.202402609
Francesca Sciarretta, Fabio Zaccaria, Andrea Ninni, Veronica Ceci, Riccardo Turchi, S. Apolloni, M. Milani, Ilaria Della Valle, Marta Tiberi, V. Chiurchiù, N. D’Ambrosi, S. Pedretti, N. Mitro, C. Volonté, S. Amadio, Katia Aquilano, Daniele Lettieri-Barbato
Frataxin depletion triggers reactive microglia with increase glucose catabolism. Butyrate treatment reinstates immunometabolic balance, potentially offering neuroprotection.
Frataxin消耗会引发反应性小胶质细胞,增加葡萄糖分解代谢。丁酸盐治疗可恢复免疫代谢平衡,从而提供潜在的神经保护。
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引用次数: 0
Nr1h4 and Thrb ameliorate ER stress and provide protection in the MPTP mouse model of Parkinson's. Nr1h4 和 Thrb 可改善 ER 压力,并为 MPTP 帕金森病小鼠模型提供保护。
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-12 DOI: 10.26508/lsa.202302416
Nancy Ahuja, Shalini Gupta, Rashmi Arora, Ella Bhagyaraj, Drishti Tiwari, Sumit Kumar, Pawan Gupta
Elevated ER stress has been linked to the pathogenesis of several disease conditions including neurodegeneration. In this study, we have holistically determined the differential expression of all the nuclear receptors (NRs) in the presence of classical ER stress inducers. Activation of Nr1h4 and Thrb by their cognate ligands (GW4064 and T3) ameliorates the tunicamycin (TM)-induced expression of ER stress genes. A combination of both ligands is effective in mitigating cell death induced by TM. Further exploration of their protective effects in the Parkinson's disease (PD) model shows that they reduce MPP+-induced dissipation of mitochondrial membrane potential and ROS generation in an in vitro PD model in neuronal cells. Furthermore, the generation of an experimental murine PD model reveals that simultaneous treatment of GW4064 and T3 protects mice from ER stress, dopaminergic cell death, and functional deficits in the MPTP mouse model of PD. Thus, activation of Nr1h4 and Thrb by their respective ligands plays an indispensable role in ER stress amelioration and mounts protective effects in the MPTP mouse model of PD.
ER应激升高与包括神经变性在内的多种疾病的发病机制有关。在这项研究中,我们全面测定了所有核受体(NRs)在经典ER应激诱导剂存在时的差异表达。通过同源配体(GW4064 和 T3)激活 Nr1h4 和 Thrb,可改善妥尼霉素(TM)诱导的 ER 应激基因的表达。这两种配体的组合能有效减轻 TM 诱导的细胞死亡。对它们在帕金森病(PD)模型中保护作用的进一步探索表明,在体外帕金森病模型的神经细胞中,它们能减少 MPP+ 诱导的线粒体膜电位耗散和 ROS 生成。此外,实验性小鼠帕金森病模型的生成表明,在 MPTP 小鼠帕金森病模型中,GW4064 和 T3 的同时治疗可保护小鼠免受 ER 应激、多巴胺能细胞死亡和功能障碍的影响。因此,Nr1h4和Thrb各自配体的激活在ER应激改善和MPTP小鼠帕金森病模型的保护作用中起着不可或缺的作用。
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引用次数: 0
Structural basis of translation inhibition by a valine tRNA-derived fragment. 缬氨酸 tRNA 衍生片段抑制翻译的结构基础
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-10 DOI: 10.26508/lsa.202302488
Yun Wu, Meng-Ting Ni, Ying-Hui Wang, Chen Wang, Hai Hou, Xing Zhang, Jie Zhou
Translational regulation by non-coding RNAs is a mechanism commonly used by cells to fine-tune gene expression. A fragment derived from an archaeal valine tRNA (Val-tRF) has been previously identified to bind the small subunit of the ribosome and inhibit translation in Haloferax volcanii Here, we present three cryo-electron microscopy structures of Val-tRF bound to the small subunit of Sulfolobus acidocaldarius ribosomes at resolutions between 4.02 and 4.53 Å. Within these complexes, Val-tRF was observed to bind to conserved RNA-interacting sites, including the ribosomal decoding center. The binding of Val-tRF destabilizes helices h24, h44, and h45 and the anti-Shine-Dalgarno sequence of 16S rRNA. The binding position of this molecule partially overlaps with the translation initiation factor aIF1A and occludes the mRNA P-site codon. Moreover, we found that the binding of Val-tRF is associated with steric hindrance of the H69 base of 23S rRNA in the large ribosome subunit, thereby preventing 70S assembly. Our data exemplify how tRNA-derived fragments bind to ribosomes and provide new insights into the mechanisms underlying translation inhibition by Val-tRFs.
非编码 RNA 的翻译调控是细胞常用来微调基因表达的一种机制。在这里,我们展示了 Val-tRF 与 Sulfolobus acidocaldarius 核糖体小亚基结合的三个冷冻电镜结构,其分辨率介于 4.02 Å 和 4.53 Å 之间。在这些复合物中,我们观察到 Val-tRF 与包括核糖体解码中心在内的保守 RNA 相互作用位点结合。Val-tRF 的结合会破坏螺旋 h24、h44 和 h45 以及 16S rRNA 的反正弦-达尔加诺序列的稳定性。该分子的结合位置与翻译起始因子 aIF1A 部分重叠,并堵塞了 mRNA P 位点密码子。此外,我们发现 Val-tRF 的结合与大核糖体亚基中 23S rRNA 的 H69 碱基的立体阻碍有关,从而阻止了 70S 的组装。我们的数据举例说明了 tRNA 衍生片段如何与核糖体结合,并为了解 Val-tRFs 抑制翻译的机制提供了新的视角。
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引用次数: 0
Sensitive circulating tumor DNA-based residual disease detection in epithelial ovarian cancer. 基于循环肿瘤 DNA 的上皮性卵巢癌残留疾病灵敏检测。
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.26508/lsa.202402658
Heini Ml Kallio, Kalle Savolainen, Tuomo Virtanen, Lauri Ryyppö, Hanna Selin, Päivi Martikainen, Synnöve Staff, Kati Kivinummi, Joonatan Sipola, Juuso Vuorinen, Jussi Nikkola, Matti Nykter, Annika Auranen, Matti Annala
Epithelial ovarian cancer (EOC) is one of the leading causes of cancer-related death in women worldwide, and is characterized by a high rate of recurrence after surgery and chemotherapy. We sought to implement a circulating tumor DNA (ctDNA)-based blood test for more accurate post-operative surveillance of this disease. We analyzed 264 plasma samples collected between June 2016 and September 2021 from 63 EOC patients using tumor-guided plasma cell-free DNA analysis to detect residual disease after treatment. Assay specificity was verified using cross-patient analysis of 1,195 control samples. ctDNA was detected in 51 of 55 (93%) samples at diagnosis, and 18 of 18 (100%) samples at progression. Positive ctDNA in the last on-treatment sample was associated with rapid progression (median 1.02 versus 3.38 yr, HR = 5.63, P < 0.001) and reduced overall survival (median 2.31 versus NR yr, HR = 8.22, P < 0.001) in patients with high-grade serous cancer. In the case of 12 patients, ctDNA assays detected progression earlier than standard surveillance, with a median lead time of 5.9 mo. To approach the physical limits of ctDNA detection, five patients were analyzed using ultra-sensitive assays interrogating 479-1,856 tumor mutations, capable of tracking ctDNA fractions down to 0.0004%. Our results demonstrate that ctDNA assays achieve high sensitivity and specificity in detecting post-operative residual disease in EOC.
上皮性卵巢癌(EOC)是全球妇女因癌症死亡的主要原因之一,其特点是手术和化疗后复发率高。我们试图采用一种基于循环肿瘤 DNA (ctDNA) 的血液检验来更准确地监测这种疾病的术后情况。我们分析了2016年6月至2021年9月期间收集的63名EOC患者的264份血浆样本,利用肿瘤引导的血浆无细胞DNA分析检测治疗后的残留疾病。55份样本中有51份(93%)在诊断时检测到ctDNA,18份样本中有18份(100%)在病情进展时检测到ctDNA。在高级别浆液性癌患者中,最后一份治疗样本中的ctDNA阳性与病情进展快(中位数为1.02年对3.38年,HR=5.63,P< 0.001)和总生存期缩短(中位数为2.31年对NR年,HR=8.22,P< 0.001)有关。为了接近ctDNA检测的物理极限,我们对五名患者进行了分析,使用了超灵敏检测方法,检测了479-1856个肿瘤突变,能够追踪低至0.0004%的ctDNA。我们的研究结果表明,ctDNA检测方法在检测EOC术后残留疾病方面具有很高的灵敏度和特异性。
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引用次数: 0
DEFA1A3 DNA gene-dosage regulates the kidney innate immune response during upper urinary tract infection. DEFA1A3 DNA 基因剂量调节上尿路感染时肾脏的先天性免疫反应
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.26508/lsa.202302462
Jorge J Canas, Samuel W Arregui, Shaobo Zhang, Taylor Knox, Christi Calvert, Vijay Saxena, Andrew L Schwaderer, David S Hains
Antimicrobial peptides (AMPs) are host defense effectors with potent neutralizing and immunomodulatory functions against invasive pathogens. The AMPs α-Defensin 1-3/DEFA1A3 participate in innate immune responses and influence patient outcomes in various diseases. DNA copy-number variations in DEFA1A3 have been associated with severity and outcomes in infectious diseases including urinary tract infections (UTIs). Specifically, children with lower DNA copy numbers were more susceptible to UTIs. The mechanism of action by which α-Defensin 1-3/DEFA1A3 copy-number variations lead to UTI susceptibility remains to be explored. In this study, we use a previously characterized transgenic knock-in of the human DEFA1A3 gene mouse to dissect α-Defensin 1-3 gene dose-dependent antimicrobial and immunomodulatory roles during uropathogenic Escherichia coli (UPEC) UTI. We elucidate the relationship between kidney neutrophil- and collecting duct intercalated cell-derived α-Defensin 1-3/DEFA1A3 expression and UTI. We further describe cooperative effects between α-Defensin 1-3 and other AMPs that potentiate the neutralizing activity against UPEC. Cumulatively, we demonstrate that DEFA1A3 directly protects against UPEC meanwhile impacting pro-inflammatory innate immune responses in a gene dosage-dependent manner.
抗菌肽(AMPs)是一种宿主防御效应物质,对侵入性病原体具有强大的中和及免疫调节功能。AMPs α-Defensin 1-3/DEFA1A3 参与先天性免疫反应并影响各种疾病的患者预后。DEFA1A3的DNA拷贝数变异与包括尿路感染(UTI)在内的感染性疾病的严重程度和预后有关。具体来说,DNA拷贝数较低的儿童更容易患UTI。α-Defensin 1-3/DEFA1A3 拷贝数变异导致UTI易感性的作用机制仍有待探索。在本研究中,我们利用先前鉴定的人类 DEFA1A3 基因转基因敲入小鼠,剖析了 α-Defensin 1-3 基因在尿路致病性大肠杆菌(UPEC)UTI 中的剂量依赖性抗菌和免疫调节作用。我们阐明了肾脏中性粒细胞和集合管间细胞衍生的 α-Defensin 1-3/DEFA1A3 表达与 UTI 之间的关系。我们进一步描述了 α-Defensin 1-3 与其他 AMPs 之间的协同作用,这些 AMPs 可增强对 UPEC 的中和活性。总之,我们证明了 DEFA1A3 可直接抵御 UPEC,同时以基因剂量依赖的方式影响促炎性先天性免疫反应。
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引用次数: 0
Differential effects of translation inhibitors on Plasmodium berghei liver stage parasites. 翻译抑制剂对疟原虫肝阶段寄生虫的不同影响
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-04 DOI: 10.26508/lsa.202302540
James L McLellan, Kirsten K Hanson
Increasing numbers of antimalarial compounds are being identified that converge mechanistically at inhibition of cytoplasmic translation, regardless of the molecular target or mechanism. A deeper understanding of how their effectiveness as liver stage translation inhibitors relates to their chemoprotective potential could prove useful. Here, we probed that relationship using the Plasmodium berghei-HepG2 liver stage infection model. After determining translation inhibition EC50s for five compounds, we tested them at equivalent effective concentrations to compare the parasite response to, and recovery from, a brief period of translation inhibition in early schizogony, followed by parasites to 120 h post-infection to assess antiplasmodial effects of the treatment. We show compound-specific heterogeneity in single parasite and population responses to translation inhibitor treatment, with no single metric strongly correlated to the release of hepatic merozoites for all compounds. We also demonstrate that DDD107498 is capable of exerting antiplasmodial effects on translationally arrested liver stage parasites and uncover unexpected growth dynamics during the liver stage. Our results demonstrate that translation inhibition efficacy does not determine antiplasmodial efficacy for these compounds.
越来越多的抗疟化合物被发现在机制上趋同于抑制细胞质翻译,无论其分子靶点或机制如何。更深入地了解这些化合物作为肝脏阶段翻译抑制剂的有效性与其化学保护潜力之间的关系可能会被证明是有用的。在此,我们使用疟原虫-HepG2 肝阶段感染模型来探究这种关系。在确定了五种化合物的翻译抑制 EC50s 后,我们以等效的有效浓度对它们进行了测试,以比较寄生虫对早期分裂期短暂翻译抑制的反应和恢复情况,然后将寄生虫寄生到感染后 120 小时,以评估治疗的抗疟效果。我们发现单个寄生虫和寄生虫群对翻译抑制剂处理的反应具有化合物特异性的异质性,所有化合物都没有与肝脏裂殖子释放密切相关的单一指标。我们还证明了 DDD107498 能够对翻译停滞的肝阶段寄生虫产生抗寄生虫作用,并发现了肝阶段寄生虫意想不到的生长动态。我们的研究结果表明,翻译抑制功效并不决定这些化合物的抗疟功效。
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引用次数: 0
Acetylation of Rec8 cohesin complexes regulates reductional chromosome segregation in meiosis. Rec8凝聚素复合物的乙酰化调节减数分裂过程中的还原染色体分离。
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-04 DOI: 10.26508/lsa.202402606
Ziqiang Li, Yu Liu, Andrew W Jones, Yoshinori Watanabe
For establishing sister chromatid cohesion and proper chromosome segregation in mitosis in fission yeast, the acetyltransferase Eso1 plays a key role. Eso1 acetylates cohesin complexes, at two conserved lysine residues K105 and K106 of the cohesin subunit Psm3. Although Eso1 also contributes to reductional chromosome segregation in meiosis, the underlying molecular mechanisms have remained elusive. Here, we purified meiosis-specific Rec8 cohesin complexes localized at centromeres and identified a new acetylation at Psm3-K1013, which largely depends on the meiotic kinetochore factor meikin (Moa1). Our molecular genetic analyses indicate that Psm3-K1013 acetylation cooperates with canonical acetylation at Psm3-K105 and K106, and plays a crucial role in establishing reductional chromosome segregation in meiosis.
在裂殖酵母有丝分裂过程中,乙酰转移酶 Eso1 在建立姐妹染色单体内聚力和正确的染色体分离方面发挥着关键作用。Eso1 在凝聚素亚基 Psm3 的两个保守赖氨酸残基 K105 和 K106 上对凝聚素复合物进行乙酰化。虽然 Eso1 也有助于减数分裂过程中的还原染色体分离,但其潜在的分子机制仍然难以捉摸。在这里,我们纯化了定位于中心粒的减数分裂特异性 Rec8 凝聚素复合物,并在 Psm3-K1013 处发现了一种新的乙酰化,这种乙酰化主要依赖于减数分裂动核因子 meikin(Moa1)。我们的分子遗传学分析表明,Psm3-K1013乙酰化与Psm3-K105和K106的典型乙酰化相互配合,在减数分裂过程中建立还原染色体分离中起着至关重要的作用。
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引用次数: 0
Genetic mutation of Cep76 results in male infertility due to abnormal sperm tail composition. Cep76 基因突变会导致精子尾部成分异常,从而导致男性不育。
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-03 DOI: 10.26508/lsa.202302452
Brendan J Houston, D Jo Merriner, G Gemma Stathatos, Joseph H Nguyen, Anne E O'Connor, Alexandra M Lopes, Donald F Conrad, Mark Baker, Jessica Em Dunleavy, Moira K O'Bryan
The transition zone is a specialised gate at the base of cilia/flagella, which separates the ciliary compartment from the cytoplasm and strictly regulates protein entry. We identified a potential new regulator of the male germ cell transition zone, CEP76. We demonstrated that CEP76 was involved in the selective entry and incorporation of key proteins required for sperm function and fertility into the ciliary compartment and ultimately the sperm tail. In the mutant, sperm tails were shorter and immotile as a consequence of deficits in essential sperm motility proteins including DNAH2 and AKAP4, which accumulated at the sperm neck in the mutant. Severe annulus, fibrous sheath, and outer dense fibre abnormalities were also detected in sperm lacking CEP76. Finally, we identified that CEP76 dictates annulus positioning and structure. This study suggests CEP76 as a male germ cell transition zone protein and adds further evidence to the hypothesis that the spermatid transition zone and annulus are part of the same functional structure.
过渡区是纤毛/纤毛基部的一个特殊关口,它将纤毛区与细胞质分开,并严格控制蛋白质的进入。我们发现了雄性生殖细胞过渡区的潜在新调节因子 CEP76。我们证明,CEP76 参与了精子功能和生育力所需的关键蛋白有选择性地进入纤毛区并与之结合,最终形成精子尾部。在突变体中,由于包括DNAH2和AKAP4在内的重要精子运动蛋白的缺陷,精子尾部较短且无活力,这些蛋白在突变体中聚集在精子颈部。在缺乏CEP76的精子中还发现了严重的环状结构、纤维鞘和外部致密纤维异常。最后,我们发现 CEP76 决定了环状体的定位和结构。这项研究表明,CEP76是雄性生精细胞过渡区蛋白,并为精子过渡区和环是同一功能结构的一部分这一假说提供了进一步的证据。
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引用次数: 0
VCP/p97 mediates nuclear targeting of non-ER-imported prion protein to maintain proteostasis. VCP/p97 介导非 ER 导入的朊病毒蛋白的核靶向,以维持蛋白稳态。
IF 4.4 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-03 DOI: 10.26508/lsa.202302456
Papiya Banik, Koustav Ray, Janine Kamps, Qi-Yin Chen, Hendrik Luesch, Konstanze F Winklhofer, Jörg Tatzelt
Mistargeting of secretory proteins in the cytosol can trigger their aggregation and subsequent proteostasis decline. We have identified a VCP/p97-dependent pathway that directs non-ER-imported prion protein (PrP) into the nucleus to prevent the formation of toxic aggregates in the cytosol. Upon impaired translocation into the ER, PrP interacts with VCP/p97, which facilitates nuclear import mediated by importin-ß. Notably, the cytosolic interaction of PrP with VCP/p97 and its nuclear import are independent of ubiquitination. In vitro experiments revealed that VCP/p97 binds non-ubiquitinated PrP and prevents its aggregation. Inhibiting binding of PrP to VCP/p97, or transient proteotoxic stress, promotes the formation of self-perpetuating and partially proteinase resistant PrP aggregates in the cytosol, which compromised cellular proteostasis and disrupted further nuclear targeting of PrP. In the nucleus, RNAs keep PrP in a soluble and non-toxic conformation. Our study revealed a novel ubiquitin-independent role of VCP/p97 in the nuclear targeting of non-imported secretory proteins and highlights the impact of the chemical milieu in triggering protein misfolding.
分泌蛋白在细胞质中的错误靶向会引发它们的聚集和随后的蛋白稳态下降。我们发现了一种依赖 VCP/p97 的途径,它能引导非 ER 导入的朊病毒蛋白(PrP)进入细胞核,以防止在细胞质中形成有毒的聚集体。PrP转位到ER受损后,会与VCP/p97相互作用,从而促进由importin-ß介导的核导入。值得注意的是,PrP 与 VCP/p97 的胞浆相互作用及其核导入与泛素化无关。体外实验显示,VCP/p97 可结合未泛素化的 PrP 并阻止其聚集。抑制PrP与VCP/p97的结合,或瞬时蛋白毒性应激,会促进细胞质中形成自我延续的、部分具有蛋白酶抗性的PrP聚集体,从而破坏细胞蛋白稳态,干扰PrP进一步的核靶向。在细胞核中,RNA 使 PrP 保持可溶和无毒的构象。我们的研究揭示了 VCP/p97 在非导入分泌蛋白的核靶向中发挥的不依赖泛素的新作用,并强调了化学环境在引发蛋白质错误折叠方面的影响。
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引用次数: 0
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