Pub Date : 2023-01-01DOI: 10.1017/S0024282922000421
G. Kantvilas
Abstract The term ‘siphuloid’ is introduced for a suite of distinct lichen genera with a superficially similar foliose to fruticose morphology, notably Siphula, Siphulella, Siphulopsis, Parasiphula and Knightiellastrum. Three new species are described: Parasiphula squamosa Kantvilas (from Tasmania and New Zealand), characterized by a whitish grey, squamulose or minutely foliose thallus lacking lichen substances or containing traces of atranorin; Siphula capensis Kantvilas (from southern Africa), containing baeomycesic and squamatic acids, and characterized by robust, broadly flattened, rounded lobes with thickened apices; and S. crittendenii (from the Caribbean but with an outlying collection from Queensland, Australia), an epiphytic species containing thamnolic acid, with fragile, flattened lobes mostly to 10 mm long and 1−5 mm wide, with ragged or much-divided apices. Salient features of the species of Parasiphula are summarized and a first key for this genus is presented. Infrageneric problems in Siphula are also discussed briefly.
{"title":"Three new species of siphuloid lichens, with a first key to the genus Parasiphula","authors":"G. Kantvilas","doi":"10.1017/S0024282922000421","DOIUrl":"https://doi.org/10.1017/S0024282922000421","url":null,"abstract":"Abstract The term ‘siphuloid’ is introduced for a suite of distinct lichen genera with a superficially similar foliose to fruticose morphology, notably Siphula, Siphulella, Siphulopsis, Parasiphula and Knightiellastrum. Three new species are described: Parasiphula squamosa Kantvilas (from Tasmania and New Zealand), characterized by a whitish grey, squamulose or minutely foliose thallus lacking lichen substances or containing traces of atranorin; Siphula capensis Kantvilas (from southern Africa), containing baeomycesic and squamatic acids, and characterized by robust, broadly flattened, rounded lobes with thickened apices; and S. crittendenii (from the Caribbean but with an outlying collection from Queensland, Australia), an epiphytic species containing thamnolic acid, with fragile, flattened lobes mostly to 10 mm long and 1−5 mm wide, with ragged or much-divided apices. Salient features of the species of Parasiphula are summarized and a first key for this genus is presented. Infrageneric problems in Siphula are also discussed briefly.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":"55 1","pages":"17 - 25"},"PeriodicalIF":1.4,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41727846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-01-01DOI: 10.1017/S002428292200041X
Bubba Pfeffer, Chandler T. Lymbery, Brendan Booth, Jessica L. Allen
Abstract Complete chromosomal-level assemblies of fungal genomes are rare. The intimate ecological symbioses and complex reproduction strategies utilized by fungi make highly contiguous, gapless genome assemblies particularly difficult. Here, we use long-read sequencing on the Oxford Nanopore Technology MinION platform to sequence and assemble the genome of Lepraria neglecta (Ascomycota, Lecanorales). In addition to eight contigs ascribable to chromosomes, six of which are assembled telomere-to-telomere, we discovered the presence of a complete MAT locus with two conserved MAT1-2 genes and a putative MAT1-1 pseudogene. The full genome assembly of a widespread, common species presents an opportunity for new insights into lichen reproduction while the presence of the mating-type locus in the genome of an asexual lichen raises fundamental questions about reproductive biology in fungi generally.
{"title":"Chromosomal genome sequence assembly and mating-type (MAT) locus characterization of the leprose asexual lichenized fungus Lepraria neglecta (Nyl.) Erichsen","authors":"Bubba Pfeffer, Chandler T. Lymbery, Brendan Booth, Jessica L. Allen","doi":"10.1017/S002428292200041X","DOIUrl":"https://doi.org/10.1017/S002428292200041X","url":null,"abstract":"Abstract Complete chromosomal-level assemblies of fungal genomes are rare. The intimate ecological symbioses and complex reproduction strategies utilized by fungi make highly contiguous, gapless genome assemblies particularly difficult. Here, we use long-read sequencing on the Oxford Nanopore Technology MinION platform to sequence and assemble the genome of Lepraria neglecta (Ascomycota, Lecanorales). In addition to eight contigs ascribable to chromosomes, six of which are assembled telomere-to-telomere, we discovered the presence of a complete MAT locus with two conserved MAT1-2 genes and a putative MAT1-1 pseudogene. The full genome assembly of a widespread, common species presents an opportunity for new insights into lichen reproduction while the presence of the mating-type locus in the genome of an asexual lichen raises fundamental questions about reproductive biology in fungi generally.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":"55 1","pages":"41 - 50"},"PeriodicalIF":1.4,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49584491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-11-01DOI: 10.1017/s0024282922000330
C. Ellis
Certain lichen epiphytes are restricted to old-growth forest stands with long ‘ecological continuity’, explained by i) niche specialism and their dependence on microhabitats associated with old stands including veteran or senescent trees, and/or ii) dispersal limitation with probabilities of colonization being relaxed over extended time periods. ‘Calicioid’ species are among the most important old-growth indicators, yet they reproduce sexually via small spores that appear widely dispersed at ecological scales. This suggests that they should have a high level of niche specialism compared to lichen epiphytes in general, explaining their role as old-growth indicators. However, comparisons of niche specialism are challenging, and this study uses epiphytic, corticolous calicioid species as an appropriate test case. Having measured 20 variables that constrain the lichen epiphyte niche, these were collapsed into a ‘hypervolume’ representing the sampled environmental space available for occupancy by lichens in Scotland as a study system. It was then possible to examine the occupancy of this hypervolume by individual lichens (niche breadth), with the proportion/percent occupied used to estimate a niche specialism score. Consequently, epiphyte calicioid species are confirmed to have a high degree of niche specialism compared to lichen epiphytes in general, and compared to other old-growth indicators, with their niche position directed towards drier climates including locally sheltered microhabitats associated with old-growth forest structure.
{"title":"A hypervolume approach to niche specialism, tested for the old-growth indicator status of calicioids","authors":"C. Ellis","doi":"10.1017/s0024282922000330","DOIUrl":"https://doi.org/10.1017/s0024282922000330","url":null,"abstract":"Certain lichen epiphytes are restricted to old-growth forest stands with long ‘ecological continuity’, explained by i) niche specialism and their dependence on microhabitats associated with old stands including veteran or senescent trees, and/or ii) dispersal limitation with probabilities of colonization being relaxed over extended time periods. ‘Calicioid’ species are among the most important old-growth indicators, yet they reproduce sexually via small spores that appear widely dispersed at ecological scales. This suggests that they should have a high level of niche specialism compared to lichen epiphytes in general, explaining their role as old-growth indicators. However, comparisons of niche specialism are challenging, and this study uses epiphytic, corticolous calicioid species as an appropriate test case. Having measured 20 variables that constrain the lichen epiphyte niche, these were collapsed into a ‘hypervolume’ representing the sampled environmental space available for occupancy by lichens in Scotland as a study system. It was then possible to examine the occupancy of this hypervolume by individual lichens (niche breadth), with the proportion/percent occupied used to estimate a niche specialism score. Consequently, epiphyte calicioid species are confirmed to have a high degree of niche specialism compared to lichen epiphytes in general, and compared to other old-growth indicators, with their niche position directed towards drier climates including locally sheltered microhabitats associated with old-growth forest structure.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":"1 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43604398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-11-01DOI: 10.1017/s0024282922000317
A. Orange
Normandina acroglypta, as recently circumbscribed, is shown to comprise two species: N. acroglypta s. str. with subsquamulose marginal areoles, two unidentified terpenoids by thin-layer chromatography, and growing over rock; and N. chlorococca, with convex marginal areoles, zeorin or no substances detected by thin-layer chromatography, and growing over bark. Normandina dictyospora is newly described from the Falkland Islands and is characterized by relatively large, submuriform ascospores, and no substances detected.
{"title":"The crustose species of Normandina (Verrucariaceae)","authors":"A. Orange","doi":"10.1017/s0024282922000317","DOIUrl":"https://doi.org/10.1017/s0024282922000317","url":null,"abstract":"Normandina acroglypta, as recently circumbscribed, is shown to comprise two species: N. acroglypta s. str. with subsquamulose marginal areoles, two unidentified terpenoids by thin-layer chromatography, and growing over rock; and N. chlorococca, with convex marginal areoles, zeorin or no substances detected by thin-layer chromatography, and growing over bark. Normandina dictyospora is newly described from the Falkland Islands and is characterized by relatively large, submuriform ascospores, and no substances detected.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":" ","pages":""},"PeriodicalIF":1.4,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48035996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-11-01DOI: 10.1017/s002428292200024x
I. Černajová, J. Steinová, Zuzana Škvorová, P. Škaloud
Cladonia luteoalba shows a specific pattern in chemical variability. Its chemotype coincides with that of the associated Cladonia thalli. This has led to the formation of various hypotheses, but its true nature has never been clarified. We collected C. luteoalba in Central Europe and Norway. The chemotypes were detected by TLC and the mycobionts and photobionts were identified by Sanger sequencing of ITS rDNA. Mycobiont cultures were obtained and Illumina metabarcoding of the fungal ITS1 rDNA region was performed targeting minor mycobionts within the thalli. None of the methods supported C. luteoalba as a distinct Cladonia species. In phylogenetic analyses, it was placed in C. straminea and the C. coccifera agg., following the pattern in chemistry. No minor Cladonia were detected by metabarcoding or cultivation. Thus, C. luteoalba remains enigmatic as our data did not support its distinction as a separate Cladonia species.
{"title":"The curious case of Cladonia luteoalba: no support for its distinction","authors":"I. Černajová, J. Steinová, Zuzana Škvorová, P. Škaloud","doi":"10.1017/s002428292200024x","DOIUrl":"https://doi.org/10.1017/s002428292200024x","url":null,"abstract":"Cladonia luteoalba shows a specific pattern in chemical variability. Its chemotype coincides with that of the associated Cladonia thalli. This has led to the formation of various hypotheses, but its true nature has never been clarified. We collected C. luteoalba in Central Europe and Norway. The chemotypes were detected by TLC and the mycobionts and photobionts were identified by Sanger sequencing of ITS rDNA. Mycobiont cultures were obtained and Illumina metabarcoding of the fungal ITS1 rDNA region was performed targeting minor mycobionts within the thalli. None of the methods supported C. luteoalba as a distinct Cladonia species. In phylogenetic analyses, it was placed in C. straminea and the C. coccifera agg., following the pattern in chemistry. No minor Cladonia were detected by metabarcoding or cultivation. Thus, C. luteoalba remains enigmatic as our data did not support its distinction as a separate Cladonia species.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":" ","pages":""},"PeriodicalIF":1.4,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45241437","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-11-01DOI: 10.1017/s0024282922000275
I. Fayyaz, N. Afshan, A. Khalid
A new species in the genus Phaeophyscia is described from Azad Jammu and Kashmir, Pakistan, supported by nrITS sequences, morphology and chemistry. The taxon is characterized by a green to greyish green thallus, usually narrow (0.5–2 mm), flat to convex lobes with abundant marginal soralia, black, dense small rhizines, small Physcia-type ascospores 18–22 × 8–10 μm and an absence of pycnidia. Differences from related species are discussed.
{"title":"Phaeophyscia kashmirensis sp. nov. (Lecanorales, Physciaceae) from Azad Jammu and Kashmir, Pakistan","authors":"I. Fayyaz, N. Afshan, A. Khalid","doi":"10.1017/s0024282922000275","DOIUrl":"https://doi.org/10.1017/s0024282922000275","url":null,"abstract":"A new species in the genus Phaeophyscia is described from Azad Jammu and Kashmir, Pakistan, supported by nrITS sequences, morphology and chemistry. The taxon is characterized by a green to greyish green thallus, usually narrow (0.5–2 mm), flat to convex lobes with abundant marginal soralia, black, dense small rhizines, small Physcia-type ascospores 18–22 × 8–10 μm and an absence of pycnidia. Differences from related species are discussed.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":" ","pages":""},"PeriodicalIF":1.4,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45549586","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-11-01DOI: 10.1017/s0024282922000226
R. Mamut, Aerguli Jiamahat, Abdulla Abbas
According to morphological and molecular data, a new species of Lecidea s. str., Lecidea glacierensis, is described from Xinjiang Province, China. It is distinctive due to its well-developed, regularly areolate to bullate thallus, and its habitat on calciferous rocks. This species was collected mostly in the area of Tianshan No.1 Glacier, which is located at an elevation of 3454 m and c. 118 km south-west of Urumqi and is considered to be one of the most important dryland glacier areas in Asia. An illustration and detailed description of the taxon are provided.
{"title":"Lecidea glacierensis (Lecideaceae), a new lichen species from China revealed by morphology and molecular phylogenetics","authors":"R. Mamut, Aerguli Jiamahat, Abdulla Abbas","doi":"10.1017/s0024282922000226","DOIUrl":"https://doi.org/10.1017/s0024282922000226","url":null,"abstract":"According to morphological and molecular data, a new species of Lecidea s. str., Lecidea glacierensis, is described from Xinjiang Province, China. It is distinctive due to its well-developed, regularly areolate to bullate thallus, and its habitat on calciferous rocks. This species was collected mostly in the area of Tianshan No.1 Glacier, which is located at an elevation of 3454 m and c. 118 km south-west of Urumqi and is considered to be one of the most important dryland glacier areas in Asia. An illustration and detailed description of the taxon are provided.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":" ","pages":""},"PeriodicalIF":1.4,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43665951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-09-01DOI: 10.1017/S0024282922000251
Stella G. Temu, P. Clerc, M. R. Nadel, L. Tibell, D. Tibuhwa, Sanja Tibell
Abstract This study investigated the molecular, chemical and morphological variation in the Usnea pectinata aggregate using 42 specimens, 22 from Tanzania and 20 from São Tomé and Príncipe. A total of 31 sequences (13 ITS, 13 nuLSU and 5 RPB1) were generated. The results are presented in two phylogenies: first a three-markers ‘backbone’ phylogeny for the U. pectinata aggregate, where six distinct, strongly supported subclades indicate considerable genetic variation in the dataset; and second, an ITS phylogeny with 47 terminals along with a mapping of morphological and chemistry data. Several well-supported monophyletic clades were recovered in both phylogenies and these may well represent separate species in the complex referred to here as the U. pectinata aggregate. Three morphotypes characterized by axis pigmentation and four by branch shape were noted. Six chemotypes were observed.
{"title":"Molecular, morphological and chemical variation of the Usnea pectinata aggregate from Tanzania, São Tomé and Príncipe","authors":"Stella G. Temu, P. Clerc, M. R. Nadel, L. Tibell, D. Tibuhwa, Sanja Tibell","doi":"10.1017/S0024282922000251","DOIUrl":"https://doi.org/10.1017/S0024282922000251","url":null,"abstract":"Abstract This study investigated the molecular, chemical and morphological variation in the Usnea pectinata aggregate using 42 specimens, 22 from Tanzania and 20 from São Tomé and Príncipe. A total of 31 sequences (13 ITS, 13 nuLSU and 5 RPB1) were generated. The results are presented in two phylogenies: first a three-markers ‘backbone’ phylogeny for the U. pectinata aggregate, where six distinct, strongly supported subclades indicate considerable genetic variation in the dataset; and second, an ITS phylogeny with 47 terminals along with a mapping of morphological and chemistry data. Several well-supported monophyletic clades were recovered in both phylogenies and these may well represent separate species in the complex referred to here as the U. pectinata aggregate. Three morphotypes characterized by axis pigmentation and four by branch shape were noted. Six chemotypes were observed.","PeriodicalId":18124,"journal":{"name":"Lichenologist","volume":"54 1","pages":"291 - 298"},"PeriodicalIF":1.4,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46288670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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