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Quantitative Study on the Blockage Degree of Pores Due to Asphaltene Precipitation During CO2 Flooding in Tight Reservoirs With NMR 致密储层CO2驱油过程中沥青质沉淀对孔隙堵塞程度的核磁共振定量研究
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-11 DOI: 10.1002/mrc.70053
Weidong Wang, Weian Huang, Qian Sang, Wei Lv, Junteng Sun, Zhihong Yang

CO2 flooding is commonly employed for enhanced oil recovery in tight reservoirs. However, asphaltene deposition-induced pore blockage occurs during injection. Conventional studies primarily neglect pore-scale impairment mechanisms. To accurately characterize asphaltene precipitation patterns and quantify microscopic pore blockage, this study integrates static miscibility experiments with dynamic flooding tests. The methodology investigates parametric influences on asphaltene precipitation volumes, evaluates deposition dynamics across pore-size distributions, and employs NMR to quantify pore blockage ratios. Experimental results demonstrated that the Chang-8 Block crude oil in the Ordos Basin exhibited a minimum miscibility pressure (MMP) of 18.58 MPa at 60°C, with the system being identified as asphaltene-unstable. Post-CO2 miscibility, asphaltene precipitation increases progressively with both rising temperature and pressure, reaching maximum escalation rates at pressures approaching the MMP. However, this escalation rate moderated when pressure exceeded the MMP. Formation damage and pore blockage ratios increased progressively with CO2 injection volumes, reaching 14.27% at 6 PV. Initial blockage occurred preferentially in macropores, followed by concurrent impairment in both macropores and micropores. Elevated displacement temperatures enhanced CO2 dissolution. Below CO2 critical conditions (T > 31.6°C, p > 7.38 MPa), limited displacement efficiency resulted in macropore blockage. Upon exceeding the critical temperature, pore blockage escalation intensified, achieving 25.22% at 60°C. This study systematically investigates asphaltene precipitation characteristics within tight reservoir cores during CO2 flooding, clarifies the precipitation law of asphaltene in the core under the influence of different factors, and provides operational guidelines for enhancing recovery efficiency and optimizing field-scale CO2 injection strategies in tight reservoirs.

为了提高致密油藏的采收率,通常采用CO2驱油技术。然而,沥青质沉积引起的孔隙堵塞在注入过程中发生。传统研究主要忽略了孔隙尺度损伤机制。为了准确表征沥青质沉淀模式并量化微观孔隙堵塞,本研究将静态混相实验与动态驱油试验相结合。该方法研究了参数对沥青质沉淀体积的影响,评估了孔隙大小分布中的沉积动力学,并利用核磁共振量化孔隙堵塞比。实验结果表明,鄂尔多斯盆地长8区块原油在60℃条件下的最小混相压力(MMP)为18.58 MPa,体系为沥青质不稳定体系。二氧化碳混相后,沥青质沉淀随着温度和压力的升高而逐渐增加,在压力接近MMP时达到最大增长速率。然而,当压力超过MMP时,这种上升速度减慢。随着CO2注入量的增加,地层损害和孔隙堵塞比例逐渐增加,在6 PV时达到14.27%。最初的堵塞优先发生在大孔中,其次是大孔和微孔同时受损。升高的驱替温度促进了CO2的溶解。在CO2临界条件下(T > 31.6℃,p > 7.38 MPa),有限的驱替效率导致大孔堵塞。超过临界温度后,孔隙堵塞加剧,在60℃时达到25.22%。本研究系统研究了致密储层岩心内CO2驱油过程中沥青质的析出特征,阐明了不同因素影响下岩心内沥青质的析出规律,为致密储层提高采收率和优化油田规模的CO2注入策略提供了操作指导。
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引用次数: 0
Revealing and Modeling NMR Relaxation Processes in Tissues: Endometrial Cancer Tissue as an Example 揭示和模拟组织中的核磁共振弛豫过程:子宫内膜癌组织为例。
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-09 DOI: 10.1002/mrc.70047
Karol Kolodziejski, Farman Ullah, Krzysztof Jablonski, Piotr Mieloch, Maciej Zukowski, Jerzy Gielecki, Danuta Kruk

These studies are intended to be a step towards the identification of characteristic markers of relaxation processes in tissues, with the aim of revealing the extent to which they are tissue and/or cancer specific, and thus to consider the potential of NMR relaxometry for diagnostic purposes. 1H spin–lattice and spin–spin relaxation studies were carried out on 20 samples of endometrial cancer tissue. The spin–lattice relaxation experiments were performed in the frequency range from 10 kHz to 10 MHz and complemented by spin–lattice and spin–spin relaxation measurements at 18.7 MHz. It was shown that the spin–lattice relaxation data can be reproduced in the form of a power-law function with the exponent of about 0.35 over the whole frequency range, while the spin–spin relaxation process was found to be bi-exponential in all cases. The relaxation scenario has been described quantitatively, leading to a number of parameters such as the ratio between the spin–spin relaxation rates and their contributions to the total relaxation process, or the relative decay of the spin–lattice relaxation rates in the low frequency range (from 10 to 100 kHz). As a result of 1H spin–lattice and spin–spin relaxation studies several characteristic relaxation features of endometrial cancer tissue have been revealed. The relaxation markers include the characteristic values of the relaxation rates, the shapes of the frequency dependencies of the spin–lattice relaxation rates and bi-exponentiality of the relaxation processes. The relaxation features have been compared with those for proteins and polymers.

这些研究旨在进一步确定组织松弛过程的特征标记,目的是揭示它们在多大程度上是组织和/或癌症特异性的,从而考虑核磁共振松弛测量在诊断目的方面的潜力。对20例子宫内膜癌组织进行1H自旋晶格和自旋弛豫研究。自旋-晶格弛豫实验在10 kHz至10 MHz频率范围内进行,并在18.7 MHz频率下进行自旋-晶格和自旋-自旋弛豫测量。结果表明,在整个频率范围内,自旋-晶格弛豫数据可以以指数约为0.35的幂律函数的形式再现,而自旋-自旋弛豫过程在所有情况下都是双指数的。对弛豫情况进行了定量描述,得出了一些参数,如自旋-自旋弛豫率与它们对总弛豫过程的贡献之间的比率,或自旋-晶格弛豫率在低频范围内(从10到100 kHz)的相对衰减。通过1H自旋-晶格和自旋-自旋弛豫研究,揭示了子宫内膜癌组织的几个特征性弛豫特征。弛豫标记包括弛豫速率的特征值、自旋-晶格弛豫速率的频率依赖关系的形状和弛豫过程的双指数性。并将其弛豫特性与蛋白质和聚合物的弛豫特性进行了比较。
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引用次数: 0
ERETIC2-Assisted NMR Determination of Acid Dissociation Constants (pKa) for Some Novel Coumarin-Substituted Benzimidazolium Salts 几种新型香豆素取代苯并咪唑盐的酸解离常数(pKa)的测定。
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-01 DOI: 10.1002/mrc.70050
Akın Mumcu

Coumarin and benzimidazole are widely preferred pharmacophores in drug design due to their broad spectrum of biological activities, and hybrid molecules formed by the combination of these two structures are thought to possess improved pharmacokinetic and pharmacodynamic properties. In this study, four coumarin-substituted benzimidazolium salts were synthesized, three of which are reported here for the first time. Structural characterization was performed using NMR spectroscopy, FTIR, and elemental analysis. To assess their acid–base properties, the pKa values of all compounds were determined using three complementary approaches: a signal intensity-based NMR method (pKaNMRI), classical potentiometric titration (pKaPTS), and the ERETIC2-assisted quantitative NMR method (pKaNMRE), which is applied for the first time in the literature for this purpose. Comparison of the obtained pKa values showed that the pKaNMRE method yielded values in the range of 10.7–11.4, the pKaNMRI method provided values between 10.0 and 11.2, and the pKaPTS method resulted in values ranging from 12.1 to 12.8. All compounds displayed intermediate acidity, attributed to the formation of resonance-stabilized anionic species upon deprotonation by tetrabutylammonium hydroxide. The consistency between the acidity rankings obtained by ERETIC2 and potentiometric titration highlights the robustness of combining advanced NMR-based quantification with classical techniques for reliable and comparative pKa determination.

香豆素和苯并咪唑具有广谱的生物活性,是药物设计中广泛使用的药物载体,而这两种结构结合形成的杂交分子被认为具有更好的药代动力学和药效学特性。本研究合成了四种香豆素取代苯并咪唑盐,其中三种为首次报道。结构表征采用核磁共振光谱,红外光谱和元素分析。为了评估它们的酸碱性质,所有化合物的pKa值采用三种互补的方法测定:基于信号强度的核磁共振法(pKaNMRI),经典电位滴定法(pKaPTS)和eretic2辅助的定量核磁共振法(pKaNMRE),这是文献中首次应用于此目的。pKaNMRE法得到的pKa值在10.7 ~ 11.4之间,pKaNMRI法得到的pKa值在10.0 ~ 11.2之间,pKaPTS法得到的pKa值在12.1 ~ 12.8之间。所有化合物都表现出中等酸性,这是由于四丁基氢氧化铵在脱质子作用下形成了共振稳定的阴离子。通过ERETIC2获得的酸度排名与电位滴定法之间的一致性突出了将先进的基于核磁共振的定量与经典技术相结合,以可靠和比较pKa测定的鲁棒性。
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引用次数: 0
Quality Control Assays of Essential Oils Using Benchtop NMR Spectroscopy: Quantification of Key Terpenes, Terpenoids, and Aldehydes Using an Internal Calibrant Approach 使用台式核磁共振光谱学的精油质量控制分析:使用内校准方法定量关键萜烯、萜类和醛。
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-30 DOI: 10.1002/mrc.70049
Juan F. Araneda, Matthew C. Leclerc, Susanne D. Riegel

NMR spectroscopy has been widely used for the identification and structural elucidation of key components found in essential oils. For many years, the combination of NMR spectroscopy with other analytical techniques, such as gas chromatography (GC) and mass spectrometry (MS), has allowed researchers to identify and quantify a wide variety of terpenes, terpenoids, aldehydes, and other very low-level components present in various essential oils. Importantly, however, whereas GC continues to be the most widely used technique for the quantification of these components, NMR spectroscopy is still mostly reserved for structural elucidation purposes. In this work, we demonstrate how benchtop NMR spectroscopy can also be used for the quantification of key species in various essential oils, increasing accessibility to this technique by decreasing the costs associated with traditional high-field NMR instrumentation and lowering the expertise barriers required for accessing this technique.

核磁共振波谱已广泛应用于精油中关键成分的鉴定和结构解析。多年来,核磁共振光谱与其他分析技术,如气相色谱(GC)和质谱(MS)相结合,使研究人员能够识别和量化各种各样的萜烯、萜类、醛类和其他存在于各种精油中的非常低含量的成分。然而,重要的是,尽管气相色谱仍然是这些成分定量最广泛使用的技术,但核磁共振波谱仍然主要用于结构解析目的。在这项工作中,我们展示了台式核磁共振波谱也可以用于各种精油中关键物种的量化,通过降低与传统高场核磁共振仪器相关的成本和降低获取该技术所需的专业知识壁垒,增加了该技术的可及性。
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引用次数: 0
Solid-State NMR Elucidation of Intermolecular Interactions in Venetoclax–Fumaric Acid Cocrystal 维内托酸-富马酸共晶分子间相互作用的固态核磁共振解析。
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-26 DOI: 10.1002/mrc.70039
Shovik Ray, Ranadeep Bokalial, Rahul B. Chavan, Sai Adiseshu Dupakuntla, Sanjeev Giri, Gowthamarajan Kuppusamy, Sheetal Kumar Jain

Cocrystallization is of fundamental importance in active pharmaceutical ingredients in order to enhance their physicochemical properties, particularly solubility, stability, and bioavailability, without altering the pharmacological activity. While crystal engineering has provided key principles for designing cocrystals, detailed experimental insights into the specific intermolecular interactions governing cocrystallization remain important for structurally complex APIs. We investigate the cocrystallization of an antileukemia drug, venetoclax, with fumaric acid as a coformer. The formation of a new cocrystalline phase is confirmed through powder X-ray diffraction (PXRD) and differential scanning calorimetry (DSC). Solid-state nuclear magnetic resonance (NMR) spectroscopy provides key insights into the cocrystallization mechanism, revealing specific hydrogen-bonding interactions between the aromatic amine and pyrrole groups of venetoclax and the carboxylic groups of fumaric acid. These results not only demonstrate a successful case of cocrystallization but also highlight the value of complementary solid-state characterization techniques, PXRD, DSC, and solid-state NMR, in probing cocrystal formation and elucidating the underlying supramolecular interactions in complex pharmaceutical systems.

为了在不改变药理学活性的前提下提高活性药物成分的理化性质,特别是溶解度、稳定性和生物利用度,共结晶是至关重要的。虽然晶体工程为设计共晶提供了关键原则,但对控制共晶的特定分子间相互作用的详细实验见解对于结构复杂的api仍然很重要。我们研究了一种抗白血病药物venetoclax与富马酸共结晶。通过粉末x射线衍射(PXRD)和差示扫描量热法(DSC)证实了新共晶相的形成。固态核磁共振(NMR)光谱为共结晶机理提供了关键的见解,揭示了venetoclax的芳香胺和吡罗基团与富马酸的羧基之间特定的氢键相互作用。这些结果不仅展示了共结晶的成功案例,而且突出了互补的固态表征技术,PXRD, DSC和固态NMR,在探测复杂药物系统中共晶形成和阐明潜在的超分子相互作用方面的价值。
{"title":"Solid-State NMR Elucidation of Intermolecular Interactions in Venetoclax–Fumaric Acid Cocrystal","authors":"Shovik Ray,&nbsp;Ranadeep Bokalial,&nbsp;Rahul B. Chavan,&nbsp;Sai Adiseshu Dupakuntla,&nbsp;Sanjeev Giri,&nbsp;Gowthamarajan Kuppusamy,&nbsp;Sheetal Kumar Jain","doi":"10.1002/mrc.70039","DOIUrl":"10.1002/mrc.70039","url":null,"abstract":"<div>\u0000 \u0000 <p>Cocrystallization is of fundamental importance in active pharmaceutical ingredients in order to enhance their physicochemical properties, particularly solubility, stability, and bioavailability, without altering the pharmacological activity. While crystal engineering has provided key principles for designing cocrystals, detailed experimental insights into the specific intermolecular interactions governing cocrystallization remain important for structurally complex APIs. We investigate the cocrystallization of an antileukemia drug, venetoclax, with fumaric acid as a coformer. The formation of a new cocrystalline phase is confirmed through powder X-ray diffraction (PXRD) and differential scanning calorimetry (DSC). Solid-state nuclear magnetic resonance (NMR) spectroscopy provides key insights into the cocrystallization mechanism, revealing specific hydrogen-bonding interactions between the aromatic amine and pyrrole groups of venetoclax and the carboxylic groups of fumaric acid. These results not only demonstrate a successful case of cocrystallization but also highlight the value of complementary solid-state characterization techniques, PXRD, DSC, and solid-state NMR, in probing cocrystal formation and elucidating the underlying supramolecular interactions in complex pharmaceutical systems.</p>\u0000 </div>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"64 1","pages":"26-33"},"PeriodicalIF":1.4,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145149737","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis and Evidence for the Stereo/Region-Specific Structure of 5,7-Di(het)aryl-4,5,6,7-tetrahydro-6-nitroazolo[1,5-a]pyrimidines 5,7-二(二)芳基-4,5,6,7-四氢-6-硝基唑[1,5-a]嘧啶立体/区域特异结构的合成与证据。
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-26 DOI: 10.1002/mrc.70048
Denis D. Chirkov, Iliya I. Butorin, Oleg S. Eltsov, Pavel A. Slepuhin, Elena A. Fesenko, Vladimir L. Rusinov

The series of new 2-substituted-5,7-di(het)aryl-6-nitro-4,5,6,7-tetrahydroazolo[1,5-a]pyrimidines were synthesized by reaction between imine and 1-substituted 2-nitroethylene derivatives. The structure of the obtained compounds including stereochemical configuration was confirmed by NMR techniques such as 1H, 13C, 2D 1H-1H (gNOESY), 1H-13C (gHSQC, gHMBC) 2D 1H-15N gHMBC and XRD method, additionally. For the obtained compounds, the signals of all hydrogen, carbon, and nitrogen nuclei in the NMR spectra were associated using two-dimensional NMR experiments. Based on the analysis of the spin–spin coupling constants (SSCC), it was found that the target compounds were obtained in the form of trans-trans isomers.

通过亚胺与1-取代2-亚硝基乙烯衍生物的反应,合成了一系列新的2-取代-5,7-二(乙)芳基-6-硝基-4,5,6,7-四氢偶氮[1,5-a]嘧啶。通过1H, 13C, 2D 1H-1H (gNOESY), 1H-13C (gHSQC, gHMBC) 2D 1H- 15n gHMBC等核磁共振技术和XRD方法对所得化合物的结构及立体构型进行了验证。对所得化合物,利用二维核磁共振实验将核磁共振波谱中所有氢、碳、氮核的信号关联起来。通过对自旋-自旋耦合常数(SSCC)的分析,发现目标化合物是以反-反异构体的形式得到的。
{"title":"Synthesis and Evidence for the Stereo/Region-Specific Structure of 5,7-Di(het)aryl-4,5,6,7-tetrahydro-6-nitroazolo[1,5-a]pyrimidines","authors":"Denis D. Chirkov,&nbsp;Iliya I. Butorin,&nbsp;Oleg S. Eltsov,&nbsp;Pavel A. Slepuhin,&nbsp;Elena A. Fesenko,&nbsp;Vladimir L. Rusinov","doi":"10.1002/mrc.70048","DOIUrl":"10.1002/mrc.70048","url":null,"abstract":"<div>\u0000 \u0000 <p>The series of new 2-substituted-5,7-di(het)aryl-6-nitro-4,5,6,7-tetrahydroazolo[1,5-<i>a</i>]pyrimidines were synthesized by reaction between imine and 1-substituted 2-nitroethylene derivatives. The structure of the obtained compounds including stereochemical configuration was confirmed by NMR techniques such as <sup>1</sup>H, <sup>13</sup>C, 2D <sup>1</sup>H-<sup>1</sup>H (gNOESY), <sup>1</sup>H-<sup>13</sup>C (gHSQC, gHMBC) 2D <sup>1</sup>H-<sup>15</sup>N gHMBC and XRD method, additionally. For the obtained compounds, the signals of all hydrogen, carbon, and nitrogen nuclei in the NMR spectra were associated using two-dimensional NMR experiments. Based on the analysis of the spin–spin coupling constants (SSCC), it was found that the target compounds were obtained in the form of <i>trans</i>-<i>trans</i> isomers.</p>\u0000 </div>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"64 1","pages":"34-46"},"PeriodicalIF":1.4,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145149803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Mechanism of [IrCl6]2− Complex Transformation in Acetone Solutions Studied by EPR and UV–Vis Spectroscopy 用EPR和紫外可见光谱研究[IrCl6]2-络合物在丙酮溶液中的转化机理
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-21 DOI: 10.1002/mrc.70046
Natalia A. Chumakova, Sergey O. Travin, Olga V. Rudnitskaya, Tatiana A. Tereshina, Milena R. Komarovskikh, Victor N. Khrustalev, Alexander I. Kokorin

The substitution reaction of Cl ion in the complex [IrCl6]2− with the acetone molecule was investigated in detail by CW X-band EPR and UV–Vis spectroscopy methods. An original software package for deconvolution of a series of EPR or optical spectra has been developed. Based on the all-data analysis, the most probable mechanism of the process under study is proposed, including four reactions (two reversible ones). One of the stages is the redox reactions between iridium(IV) and iridium(III).

用连续波x波段EPR和紫外可见光谱法研究了配合物[IrCl6]2-中Cl-离子与丙酮分子的取代反应。开发了一个原始软件包,用于一系列EPR或光谱的反褶积。在全数据分析的基础上,提出了研究过程最可能的机理,包括四个反应(两个可逆反应)。其中一个阶段是铱(IV)和铱(III)之间的氧化还原反应。
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引用次数: 0
Exploring Dysregulated Plasma Metabolites in Sickle-Cell Disease Patients Using Comparative NMR-Based Metabolomics 利用基于比较核磁共振的代谢组学研究镰状细胞病患者血浆代谢物失调
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-18 DOI: 10.1002/mrc.70044
Libun Pradhan, Chinmay Kumar Sahoo, Blessymol Varghese, Prasanta Purohit, Manoj Kumar Patro, Samira Kumar Behera, Sulakshana P. Mukherjee

Sickle-Cell Disease (SCD) is one of the most common autosomal recessive genetic blood disorders that manifest in abnormal behavior of the red blood cells (RBCs). The mutated Hb causes sickling of RBCs under deoxygenated conditions, reducing their flowing ability, pliability, and resulting in hemolysis. The pathophysiology observed in the Indian cohort varies regionally, with some Indian tribal populations depicting milder symptoms despite SCD being relatively prevalent among them. To understand the pathogenesis of SCD with respect to nongenetic parameters, we initiated a comparative untargeted metabolomics study of the eastern Indian cohort of SCD patients using 1H NMR spectroscopy. In this exploratory study, we focused only on a small cohort of 26 SCD patients from the eastern part of India with relatively high prevalence of SCD. Our NMR-based metabolomics, in combination with statistical analyses, yielded 11 of the 29 identified metabolites that showed a statistically significant difference in concentrations between healthy controls and SCD patients. The dysregulated metabolites include molecules involved in glycolysis, hypoxic, and acute-stress conditions.

镰状细胞病(SCD)是一种常见的常染色体隐性遗传血液疾病,表现为红细胞(rbc)的异常行为。突变的Hb在缺氧条件下引起红细胞镰状细胞,降低其流动能力和柔韧性,并导致溶血。在印度队列中观察到的病理生理因地区而异,尽管SCD在一些印度部落人群中相对普遍,但他们的症状较轻。为了从非遗传参数方面了解SCD的发病机制,我们使用1H NMR对东印度SCD患者队列进行了一项比较非靶向代谢组学研究。在这项探索性研究中,我们只关注了来自印度东部SCD患病率相对较高的26例SCD患者的小队列。我们基于核磁共振的代谢组学,结合统计分析,得出29种鉴定代谢物中的11种,在健康对照组和SCD患者之间的浓度有统计学显著差异。失调的代谢物包括参与糖酵解、缺氧和急性应激条件的分子。
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引用次数: 0
Monitoring Protein Deamidation in Real Time Using NMR 利用核磁共振实时监测蛋白质脱酰胺。
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-18 DOI: 10.1002/mrc.70045
Rashmi Agrata, Ranabir Das

Deamidation, a modification of glutamine residues in host proteins, plays a key role in bacterial pathogenesis, where bacterial effectors manipulate host signaling pathways by modifying proteins like ubiquitin (Ub) and Ub-like protein NEDD8. The study uses traditional and real-time NMR-based techniques to investigate the enzymatic activity of two bacterial deamidases, cycle inhibitory factors, CIFEC from Escherichia coli and CIFBP from Burkholderia pseudomallei. We employed BEST-HSQC NMR spectroscopy to monitor real-time deamidation of ubiquitin, providing a robust and efficient method for quantifying enzyme activity. Our findings highlight significant differences in catalytic efficiency between CIFEC and CIFBP, despite their structural similarities. NMR-based rate measurements show CIFBP has higher catalytic efficiency than CIFEC, consistent with the previous reports, while kinetic analysis of CIFEC indicates relatively weak substrate binding and suboptimal efficiency, suggesting a potential regulatory role during infections. While the overall globular fold of the ubiquitin remains unchanged upon deamidation, we observed changes in the local chemical environment, suggesting potential localized structural changes. This study extends the use of NMR spectroscopy to investigate irreversible posttranslational modifications (PTMs) like deamidation, offering a valuable tool for understanding the molecular mechanisms behind bacterial manipulation of host cellular processes.

脱酰胺是宿主蛋白中谷氨酰胺残基的一种修饰,在细菌发病机制中起着关键作用,细菌效应物通过修饰泛素(Ub)和泛素样蛋白NEDD8等蛋白来操纵宿主信号通路。本研究采用传统和实时核磁共振技术,研究了大肠杆菌中CIFEC和假杆菌伯克氏菌中CIFBP两种细菌脱酰胺酶的酶活性。我们采用BEST-HSQC核磁共振波谱法实时监测泛素的脱酰胺,为定量酶活性提供了一种可靠而有效的方法。我们的研究结果强调了CIFEC和CIFBP在催化效率上的显著差异,尽管它们的结构相似。基于核磁共振的速率测量显示,CIFBP比CIFEC具有更高的催化效率,这与之前的报道一致,而CIFEC的动力学分析表明,CIFEC的底物结合相对较弱,效率不理想,表明在感染过程中具有潜在的调节作用。虽然泛素的整体球形折叠在脱酰胺过程中保持不变,但我们观察到局部化学环境的变化,表明潜在的局部结构变化。这项研究扩展了核磁共振波谱的使用,以研究不可逆的翻译后修饰(PTMs),如脱酰胺,为理解细菌操纵宿主细胞过程背后的分子机制提供了有价值的工具。
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引用次数: 0
NMR Insights Into Stress-Induced Modulation of the Monomer–Dimer Equilibrium in a Small Heat Shock Protein 核磁共振对小热休克蛋白中单体-二聚体平衡的应力诱导调制的见解。
IF 1.4 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-16 DOI: 10.1002/mrc.70042
Zainab Amin, Jeetender Chugh

Small heat shock proteins (sHSPs) are essential molecular chaperones that play a crucial role in maintaining protein homeostasis and protecting cells from stress-induced damage. HSPB8 (Small heat shock protein B8), in particular, plays a crucial role in protein folding and degradation pathways and has been associated with protein aggregation disorders. However, its structural and dynamic behavior under different environmental stress conditions remains poorly defined. In particular, the effect of pH, temperature, and concentration on its oligomeric state and structural integrity needs further investigation. In this study, we performed the biophysical characterization of full-length HSPB8 and its α-crystallin domain (ACD) using solution-state nuclear magnetic resonance (NMR) spectroscopy under different environmental perturbations. The effect on the monomer–dimer equilibrium of the ACD was characterized by monitoring changes in chemical shifts and linewidths in response to the perturbations, including protein concentration, pH, and temperature. It was observed that at low pH, reduced protein concentrations, and elevated temperatures, the ACD favored sharper resonances, reflecting a monomeric state. The relative contribution of disulfide bond and noncovalent interactions in stabilizing the dimer form of ACD was also established. These results provide NMR-based molecular insights into the dynamic monomer–dimer equilibrium, crucial for HSPB8 function in protein folding.

小热休克蛋白(sHSPs)是一种重要的分子伴侣蛋白,在维持蛋白质稳态和保护细胞免受应激损伤方面起着至关重要的作用。特别是HSPB8(小热休克蛋白B8),在蛋白质折叠和降解途径中起着至关重要的作用,并与蛋白质聚集障碍有关。然而,在不同的环境应力条件下,其结构和动力性能仍不明确。特别是,pH、温度和浓度对其寡聚状态和结构完整性的影响有待进一步研究。在本研究中,我们利用溶液态核磁共振(NMR)技术对HSPB8全长及其α-晶体结构域(ACD)进行了不同环境扰动下的生物物理表征。通过监测化学位移和线宽随蛋白质浓度、pH和温度等扰动的变化来表征对ACD单体-二聚体平衡的影响。我们观察到,在低pH值、降低蛋白质浓度和升高温度下,ACD倾向于更尖锐的共振,反映单体状态。二硫键和非共价相互作用对稳定二聚体形式的ACD的相对贡献也得到了证实。这些结果提供了基于核磁共振的动态单体-二聚体平衡的分子见解,这对于HSPB8在蛋白质折叠中的功能至关重要。
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引用次数: 0
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Magnetic Resonance in Chemistry
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