Junhe Ma, Qingmei Ye, Rebecca A. Green, John Gurak, Sloan Ayers, Yande Huang, Scott A. Miller
This study presents a straightforward solution to the challenge of elucidating the structures of nitrogen containing compounds undergoing isomerization. When spectral line broadening occurs related to isomerization, be it prototropic tautomerism or bond rotations, this poses a significant obstacle to structural elucidation. By adding acids, we demonstrate a simple approach to overcome this issue and effectively sharpen NMR signals for acid stable prototropic tautomers as well as the conformational isomers containing a morpholine or piperazine ring.
{"title":"Overcoming NMR line broadening of nitrogen containing compounds: A simple solution","authors":"Junhe Ma, Qingmei Ye, Rebecca A. Green, John Gurak, Sloan Ayers, Yande Huang, Scott A. Miller","doi":"10.1002/mrc.5432","DOIUrl":"10.1002/mrc.5432","url":null,"abstract":"<p>This study presents a straightforward solution to the challenge of elucidating the structures of nitrogen containing compounds undergoing isomerization. When spectral line broadening occurs related to isomerization, be it prototropic tautomerism or bond rotations, this poses a significant obstacle to structural elucidation. By adding acids, we demonstrate a simple approach to overcome this issue and effectively sharpen NMR signals for acid stable prototropic tautomers as well as the conformational isomers containing a morpholine or piperazine ring.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139521295","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Daniel Rossado Oliveira, Eric Tavares da Costa, Leonardo Araujo Schenberg, Lucas Colucci Ducati, Claudimir Lucio do Lago
NMR spectroscopy has become a standard technique in studies both on carbon capture and storage. 13C NMR allows the detection of two peaks for carbonated aqueous samples: one for CO2(aq) and another one for the species H2CO3, HCO3−, and CO32−—herein collectively named HxCO3x-2. The chemical shift of this second peak depends on the molar fraction of the three species in equilibrium and has been used to assess the equilibrium between HCO3− and CO32−. The detection of H2CO3 at low pH solutions is hindered, because of the concurrent liberation of CO2 when the medium is acidified. Herein, a valved NMR tube facilitates the detection of the HxCO3x-2 peak across a wide pH range, even at pH 1.8 where the dominant species is H2CO3. The method employed the formation of frozen layers of NaH13CO3 and acid solutions within the tube, which are mixed as the tube reaches room temperature. At this point, the tube is already securely sealed, preventing any loss of CO2 to the atmosphere. A spectrophotometry approach allowed the measurement of the actual pH inside the pressurized NMR tube. The chemical shift for H2CO3 was determined as 160.33 ± 0.03 ppm, which is in good agreement with value obtained by DFT calculations combined with Car–Parrinello molecular dynamics. The H2CO3 pKa value determined by the present method was 3.41 ± 0.03, for 15% D2O aqueous medium and 0.8 mol/L ionic strength. The proposed method can be extended to studies about analogs such as alkyl carbonic and carbamic acids.
{"title":"13C NMR as an analytical tool for the detection of carbonic acid and pKa determination","authors":"Daniel Rossado Oliveira, Eric Tavares da Costa, Leonardo Araujo Schenberg, Lucas Colucci Ducati, Claudimir Lucio do Lago","doi":"10.1002/mrc.5430","DOIUrl":"10.1002/mrc.5430","url":null,"abstract":"<p>NMR spectroscopy has become a standard technique in studies both on carbon capture and storage. <sup>13</sup>C NMR allows the detection of two peaks for carbonated aqueous samples: one for CO<sub>2(aq)</sub> and another one for the species H<sub>2</sub>CO<sub>3</sub>, HCO<sub>3</sub><sup>−</sup>, and CO<sub>3</sub><sup>2−</sup>—herein collectively named H<sub>x</sub>CO<sub>3</sub><sup>x-2</sup>. The chemical shift of this second peak depends on the molar fraction of the three species in equilibrium and has been used to assess the equilibrium between HCO<sub>3</sub><sup>−</sup> and CO<sub>3</sub><sup>2−</sup>. The detection of H<sub>2</sub>CO<sub>3</sub> at low pH solutions is hindered, because of the concurrent liberation of CO<sub>2</sub> when the medium is acidified. Herein, a valved NMR tube facilitates the detection of the H<sub>x</sub>CO<sub>3</sub><sup>x-2</sup> peak across a wide pH range, even at pH 1.8 where the dominant species is H<sub>2</sub>CO<sub>3</sub>. The method employed the formation of frozen layers of NaH<sup>13</sup>CO<sub>3</sub> and acid solutions within the tube, which are mixed as the tube reaches room temperature. At this point, the tube is already securely sealed, preventing any loss of CO<sub>2</sub> to the atmosphere. A spectrophotometry approach allowed the measurement of the actual pH inside the pressurized NMR tube. The chemical shift for H<sub>2</sub>CO<sub>3</sub> was determined as 160.33 ± 0.03 ppm, which is in good agreement with value obtained by DFT calculations combined with Car–Parrinello molecular dynamics. The H<sub>2</sub>CO<sub>3</sub> p<i>K</i><sub><i>a</i></sub> value determined by the present method was 3.41 ± 0.03, for 15% D<sub>2</sub>O aqueous medium and 0.8 mol/L ionic strength. The proposed method can be extended to studies about analogs such as alkyl carbonic and carbamic acids.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139521293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Potentiometry is the primary pH measurement method, but alternatives are sought beyond glass electrodes operative limitations. In nuclear magnetic resonance (NMR) experiments, electrodeless pH sensing is important to track changes along titrations, during chemical reactions or inside compartmentalized environments inaccessible to electrodes, for instance. Although several interesting NMR pH indicators have been already presented, the potential of inorganic phosphate is overlooked, despite its common presence in NMR samples as the buffer main component. Its use for electrodeless pH determination can be expanded by exploiting all its three proton dissociations. This study was aimed at verifying the use of inorganic phosphate 31P chemical shift to sense pH variations, and at exploring the complementary use of pyrophosphate ions to cover a wide pH range. A simple set of equations is presented to utilize both phosphate and pyrophosphate 31P chemical shift in combination for accurate pH determination without a glass electrode over the 5–12 pH range, and without affecting the spectrum of other nuclei. The present study demonstrated an average deviation of 0.09 (maximum <0.2) pH unit from glass electrode measurements. The trimethylphosphate can be used as a suitable chemical shift reference for both 31P and 1H (also 13C), with its hydrolysis being significant only at pH > 12. The method was also demonstrated by determining the pKa of three distinct molecules in a mixture and by comparing the results to those obtained when the glass electrode was used to measure the pH. The approach shown here can be easily tuned to different experimental conditions.
{"title":"The combination of inorganic phosphate and pyrophosphate 31P-NMR for the electrodeless pH determination in the 5–12 range","authors":"Paola Carta, Mariano Andrea Scorciapino","doi":"10.1002/mrc.5429","DOIUrl":"10.1002/mrc.5429","url":null,"abstract":"<p>Potentiometry is the primary pH measurement method, but alternatives are sought beyond glass electrodes operative limitations. In nuclear magnetic resonance (NMR) experiments, electrodeless pH sensing is important to track changes along titrations, during chemical reactions or inside compartmentalized environments inaccessible to electrodes, for instance. Although several interesting NMR pH indicators have been already presented, the potential of inorganic phosphate is overlooked, despite its common presence in NMR samples as the buffer main component. Its use for electrodeless pH determination can be expanded by exploiting all its three proton dissociations. This study was aimed at verifying the use of inorganic phosphate <sup>31</sup>P chemical shift to sense pH variations, and at exploring the complementary use of pyrophosphate ions to cover a wide pH range. A simple set of equations is presented to utilize both phosphate and pyrophosphate <sup>31</sup>P chemical shift in combination for accurate pH determination without a glass electrode over the 5–12 pH range, and without affecting the spectrum of other nuclei. The present study demonstrated an average deviation of 0.09 (maximum <0.2) pH unit from glass electrode measurements. The trimethylphosphate can be used as a suitable chemical shift reference for both <sup>31</sup>P and <sup>1</sup>H (also <sup>13</sup>C), with its hydrolysis being significant only at pH > 12. The method was also demonstrated by determining the pKa of three distinct molecules in a mixture and by comparing the results to those obtained when the glass electrode was used to measure the pH. The approach shown here can be easily tuned to different experimental conditions.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139511484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Evan R. McCarney, Kenneth A. Kristoffersen, Kathryn E. Anderssen
Benchtop diffusion nuclear magnetic resonance (NMR) spectroscopy was used to perform quantitative monitoring of enzymatic hydrolysis. The study aimed to test the feasibility of the technology to characterize enzymatic hydrolysis processes in real time. Diffusion ordered spectroscopy (DOSY) was used to measure the signal intensity and apparent self-diffusion constant of solubilized protein in hydrolysate. The NMR technique was tested on an enzymatic hydrolysis reaction of red cod, a lean white fish, by the endopeptidase alcalase at 50°C. Hydrolysate samples were manually transferred from the reaction vessel to the NMR equipment. Measurement time was approximately 3 min per time point. The signal intensity from the DOSY experiment was used to measure protein concentration and the apparent self-diffusion constant was converted into an average molecular weight and an estimated degree of hydrolysis. These values were plotted as a function of time and both the rate of solubilization and the rate of protein breakdown could be calculated. In addition to being rapid and noninvasive, DOSY using benchtop NMR spectroscopy has an advantage compared with other enzymatic hydrolysis characterization methods as it gives a direct measure of average protein size; many functional properties of proteins are strongly influenced by protein size. Therefore, a method to give protein concentration and average size in real time will allow operators to more tightly control production from enzymatic hydrolysis. Although only one type of material was tested, it is anticipated that the method should be applicable to a broad variety of enzymatic hydrolysis feedstocks.
{"title":"Quantitative at-line monitoring of enzymatic hydrolysis using benchtop diffusion nuclear magnetic resonance spectroscopy","authors":"Evan R. McCarney, Kenneth A. Kristoffersen, Kathryn E. Anderssen","doi":"10.1002/mrc.5427","DOIUrl":"10.1002/mrc.5427","url":null,"abstract":"<p>Benchtop diffusion nuclear magnetic resonance (NMR) spectroscopy was used to perform quantitative monitoring of enzymatic hydrolysis. The study aimed to test the feasibility of the technology to characterize enzymatic hydrolysis processes in real time. Diffusion ordered spectroscopy (DOSY) was used to measure the signal intensity and apparent self-diffusion constant of solubilized protein in hydrolysate. The NMR technique was tested on an enzymatic hydrolysis reaction of red cod, a lean white fish, by the endopeptidase alcalase at 50°C. Hydrolysate samples were manually transferred from the reaction vessel to the NMR equipment. Measurement time was approximately 3 min per time point. The signal intensity from the DOSY experiment was used to measure protein concentration and the apparent self-diffusion constant was converted into an average molecular weight and an estimated degree of hydrolysis. These values were plotted as a function of time and both the rate of solubilization and the rate of protein breakdown could be calculated. In addition to being rapid and noninvasive, DOSY using benchtop NMR spectroscopy has an advantage compared with other enzymatic hydrolysis characterization methods as it gives a direct measure of average protein size; many functional properties of proteins are strongly influenced by protein size. Therefore, a method to give protein concentration and average size in real time will allow operators to more tightly control production from enzymatic hydrolysis. Although only one type of material was tested, it is anticipated that the method should be applicable to a broad variety of enzymatic hydrolysis feedstocks.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5427","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139490918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Solution nuclear magnetic resonance (NMR) analysis of polysaccharides can provide valuable information not only on their primary structures but also on their conformation, dynamics, and interactions under physiological conditions. One of the main problems is that non-anomeric 1H signals typically overlap, and this often hinders detailed NMR analysis. Isotope enrichment, such as with 13C and 15N, will add a new dimension to the NMR spectra of polysaccharides, and spectral analysis can be performed with enhanced sensitivity using isolated peaks. For this purpose, here we have prepared uniformly 13C- and/or 15N-labeled chondroitin polysaccharides –4)-β-D-glucuronopyranosyl-(1–3)-2-acetamido-2-deoxy-β-D-galactopyranosyl-(1– with molecular weights in the range from 310 to 460 k by bacterial fermentation. The enrichment ratios for 13C and 15N were 98.9 and 99.8%, respectively, based on the mass spectrometric analysis of the constituent chondroitin disaccharides. 1H and 13C NMR signals were assigned mainly based on HSQC and 13C-detection experiments including INADEQUATE, HETCOR, and HETCOR-TOCSY. The carbonyl carbon signal of the N-acetyl-β-D-galactosamine residue was unambiguously distinguished from the C6 carbon of the β-D-glucuronic acid residue by the observation of 13C peak splitting due to 1JCN coupling in 13C- and 15N-labeled chondroitin. The T2* and T1 were measured and indicate that both rigid and mobile sites are present in the long sequence of chondroitin. The conformation, dynamics, and interactions of chondroitin and its derivatives will be further analyzed based on the results obtained in this study.
多糖的溶液核磁共振(NMR)分析不仅能提供有关多糖一级结构的宝贵信息,还能提供有关多糖在生理条件下的构象、动力学和相互作用的宝贵信息。主要问题之一是非同分异构体的 1 H 信号通常会重叠,这往往会妨碍详细的 NMR 分析。同位素富集(如 13 C 和 15 N)将为多糖的 NMR 图谱增添新的维度,利用分离峰可提高光谱分析的灵敏度。为此,我们通过细菌发酵制备了分子量在 310 至 460 k 范围内的 13 C 和/或 15 N 标记的软骨素多糖-4)-β-D-吡喃葡萄糖基-(1-3)-2-乙酰氨基-2-脱氧-β-D-吡喃半乳糖基-(1-)。根据对组成软骨素二糖的质谱分析,13 C 和 15 N 的富集率分别为 98.9% 和 99.8%。1 H 和 13 C NMR 信号的分配主要基于 HSQC 和 13 C 检测实验,包括 INADEQUATE、HETCOR 和 HETCOR-TOCSY。通过观察 13 C 和 15 N 标记软骨素中 1 JCN 耦合导致的 13 C 峰分裂,可以明确区分 N-乙酰基-β-D-半乳糖胺残基的羰基碳信号和 β-D- 葡糖醛酸残基的 C6 碳信号。对 T2 * 和 T1 的测量表明,软骨素的长序列中既有刚性位点,也有移动位点。根据本研究的结果,我们将进一步分析软骨素及其衍生物的构象、动力学和相互作用。
{"title":"NMR characterization of uniformly 13C- and/or 15N-labeled, unsulfated chondroitins with high molecular weights","authors":"Megumi Ichikawa, Yuya Otsuka, Toshikazu Minamisawa, Noriyoshi Manabe, Yoshiki Yamaguchi","doi":"10.1002/mrc.5426","DOIUrl":"10.1002/mrc.5426","url":null,"abstract":"<p>Solution nuclear magnetic resonance (NMR) analysis of polysaccharides can provide valuable information not only on their primary structures but also on their conformation, dynamics, and interactions under physiological conditions. One of the main problems is that non-anomeric <sup>1</sup>H signals typically overlap, and this often hinders detailed NMR analysis. Isotope enrichment, such as with <sup>13</sup>C and <sup>15</sup>N, will add a new dimension to the NMR spectra of polysaccharides, and spectral analysis can be performed with enhanced sensitivity using isolated peaks. For this purpose, here we have prepared uniformly <sup>13</sup>C- and/or <sup>15</sup>N-labeled chondroitin polysaccharides –4)-β-D-glucuronopyranosyl-(1–3)-2-acetamido-2-deoxy-β-D-galactopyranosyl-(1– with molecular weights in the range from 310 to 460 k by bacterial fermentation. The enrichment ratios for <sup>13</sup>C and <sup>15</sup>N were 98.9 and 99.8%, respectively, based on the mass spectrometric analysis of the constituent chondroitin disaccharides. <sup>1</sup>H and <sup>13</sup>C NMR signals were assigned mainly based on HSQC and <sup>13</sup>C-detection experiments including INADEQUATE, HETCOR, and HETCOR-TOCSY. The carbonyl carbon signal of the <i>N</i>-acetyl-β-D-galactosamine residue was unambiguously distinguished from the C6 carbon of the β-D-glucuronic acid residue by the observation of <sup>13</sup>C peak splitting due to <sup>1</sup><i>J</i><sub>CN</sub> coupling in <sup>13</sup>C- and <sup>15</sup>N-labeled chondroitin. The <i>T</i><sub>2</sub>* and <i>T</i><sub>1</sub> were measured and indicate that both rigid and mobile sites are present in the long sequence of chondroitin. The conformation, dynamics, and interactions of chondroitin and its derivatives will be further analyzed based on the results obtained in this study.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139484262","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ryan Toomey, Jacob Powell, Jacob Cheever, James K. Harper
Since 1993, it has been known that 13C chemical shift tensor (i.e., δ11, δ22, and δ33) provides information sufficient to distinguish between COOH and COO− sites. Herein, four previously unreported metrics are proposed for differentiating COOH/COO− moieties. A new relationship is also introduced that correlates the asymmetry (i.e., δ11–δ22) of COOH sites to the proximity of hydrogen bond donating partners within 2.6 Å with high accuracy (±0.05 Å). Conversely, a limitation to all proposed metrics is that they fail to distinguish between COO− and hydrogen disordered COOH sites. To reconcile this omission, a new approach is proposed based on T1 measurements of both 1H and 13C. The 13C T1 values are particularly sensitive with the T1 for hydrogen disordered COOH moieties found to be nearly six times smaller than T1's from COO− sites.
{"title":"Distinguishing between COOH, COO−, and hydrogen disordered COOH sites in solids with 13C chemical shift anisotropy and T1 measurements","authors":"Ryan Toomey, Jacob Powell, Jacob Cheever, James K. Harper","doi":"10.1002/mrc.5425","DOIUrl":"10.1002/mrc.5425","url":null,"abstract":"<p>Since 1993, it has been known that <sup>13</sup>C chemical shift tensor (i.e., δ<sub>11</sub>, δ<sub>22</sub>, and δ<sub>33</sub>) provides information sufficient to distinguish between COOH and COO<sup>−</sup> sites. Herein, four previously unreported metrics are proposed for differentiating COOH/COO<sup>−</sup> moieties. A new relationship is also introduced that correlates the asymmetry (i.e., δ<sub>11</sub>–δ<sub>22</sub>) of COOH sites to the proximity of hydrogen bond donating partners within 2.6 Å with high accuracy (±0.05 Å). Conversely, a limitation to all proposed metrics is that they fail to distinguish between COO<sup>−</sup> and hydrogen disordered COOH sites. To reconcile this omission, a new approach is proposed based on <i>T</i><sub>1</sub> measurements of both <sup>1</sup>H and <sup>13</sup>C. The <sup>13</sup>C <i>T</i><sub>1</sub> values are particularly sensitive with the <i>T</i><sub>1</sub> for hydrogen disordered COOH moieties found to be nearly six times smaller than <i>T</i><sub>1</sub>'s from COO<sup>−</sup> sites.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139490481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Amy Jenne, Ronald Soong, Katelyn Downey, Rajshree Ghosh Biswas, Venita Decker, Falko Busse, Benjamin Goerling, Agnes Haber, Myrna J. Simpson, Andre J. Simpson
In recent years there has been a renewed interest in benchtop NMR. Given their lower cost of ownership, smaller footprint, and ease of use, they are especially suited as an educational tool. Here, a new experiment targeted at upper-year undergraduates and first-year graduate students follows the conversion of D-glucose into ethanol at low-field. First, high and low-field data on D-glucose are compared and students learn both the Hz and ppm scales and how J-coupling is field-independent. The students then acquire their own quantitative NMR datasets and perform the quantification using an Electronic Reference To Access In Vivo Concentration (ERETIC) technique. To our knowledge ERETIC is not currently taught at the undergraduate level, but has an advantage in that internal standards are not required; ideal for following processes or with future use in flow-based benchtop monitoring. Using this quantitative data, students can relate a simple chemical process (fermentation) back to more complex topics such as reaction kinetics, bridging the gaps between analytical and physical chemistry. When asked to reflect on the experiment, students had an overwhelmingly positive experience, citing agreement with learning objectives, ease of understanding the protocol, and enjoyment. Each of the respondents recommended this experiment as a learning tool for others. This experiment has been outlined for other instructors to utilize in their own courses across institutions, with the hope that a continued expansion of low-field NMR will increase accessibility and learning opportunities at the undergraduate level.
{"title":"Brewing alcohol 101: An undergraduate experiment utilizing benchtop NMR for quantification and process monitoring","authors":"Amy Jenne, Ronald Soong, Katelyn Downey, Rajshree Ghosh Biswas, Venita Decker, Falko Busse, Benjamin Goerling, Agnes Haber, Myrna J. Simpson, Andre J. Simpson","doi":"10.1002/mrc.5428","DOIUrl":"10.1002/mrc.5428","url":null,"abstract":"<p>In recent years there has been a renewed interest in benchtop NMR. Given their lower cost of ownership, smaller footprint, and ease of use, they are especially suited as an educational tool. Here, a new experiment targeted at upper-year undergraduates and first-year graduate students follows the conversion of D-glucose into ethanol at low-field. First, high and low-field data on D-glucose are compared and students learn both the Hz and ppm scales and how J-coupling is field-independent. The students then acquire their own quantitative NMR datasets and perform the quantification using an Electronic Reference To Access In Vivo Concentration (ERETIC) technique. To our knowledge ERETIC is not currently taught at the undergraduate level, but has an advantage in that internal standards are not required; ideal for following processes or with future use in flow-based benchtop monitoring. Using this quantitative data, students can relate a simple chemical process (fermentation) back to more complex topics such as reaction kinetics, bridging the gaps between analytical and physical chemistry. When asked to reflect on the experiment, students had an overwhelmingly positive experience, citing agreement with learning objectives, ease of understanding the protocol, and enjoyment. Each of the respondents recommended this experiment as a learning tool for others. This experiment has been outlined for other instructors to utilize in their own courses across institutions, with the hope that a continued expansion of low-field NMR will increase accessibility and learning opportunities at the undergraduate level.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5428","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139478772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sean T. Holmes, Cameron M. Boley, Angelika Dewicki, Zachary T. Gardner, Cameron S. Vojvodin, Robbie J. Iuliucci, Robert W. Schurko
This paper reports the principal values of the 13C chemical shift tensors for five nitrogen-dense compounds (i.e., cytosine, uracil, imidazole, guanidine hydrochloride, and aminoguanidine hydrochloride). Although these are all fundamentally important compounds, the majority do not have 13C chemical shift tensors reported in the literature. The chemical shift tensors are obtained from 1H→13C cross-polarization magic-angle spinning (CP/MAS) experiments that were conducted at a high field of 18.8 T to suppress the effects of 14N-13C residual dipolar coupling. Quantum chemical calculations using density functional theory are used to obtain the 13C magnetic shielding tensors for these compounds. The best agreement with experiment arises from calculations using the hybrid functional PBE0 or the double-hybrid functional PBE0-DH, along with the triple-zeta basis sets TZ2P or pc-3, respectively, and intermolecular effects modeled using large clusters of molecules with electrostatic embedding through the COSMO approach. These measurements are part of an ongoing effort to expand the catalog of accurate 13C chemical shift tensor measurements, with the aim of creating a database that may be useful for benchmarking the accuracy of quantum chemical calculations, developing nuclear magnetic resonance (NMR) crystallography protocols, or aiding in applications involving machine learning or data mining. This work was conducted at the National High Magnetic Field Laboratory as part of a 2-week school for introducing undergraduate students to practical laboratory experience that will prepare them for scientific careers or postgraduate studies.
本文报告了五种氮密集化合物(即胞嘧啶、尿嘧啶、咪唑、盐酸胍和盐酸氨基胍)的 13 C 化学位移张量的主要值。虽然这些都是基本的重要化合物,但大多数都没有 13 C 化学位移张量的文献报道。化学位移张量是从 1 H→13 C 交叉偏振魔角旋转(CP/MAS)实验中获得的,这些实验是在 18.8 T 的高磁场下进行的,以抑制 14 N-13 C 残余偶极耦合的影响。利用密度泛函理论进行的量子化学计算获得了这些化合物的 13 C 磁屏蔽张量。通过使用混合函数 PBE0 或双混合函数 PBE0-DH,以及三重zeta 基集 TZ2P 或 pc-3 分别进行计算,并通过 COSMO 方法使用具有静电嵌入的大分子簇模拟分子间效应,得出了与实验最吻合的结果。这些测量结果是正在进行的扩大 13 C 化学位移张量精确测量目录工作的一部分,目的是建立一个数据库,用于为量子化学计算的准确性设定基准、开发核磁共振(NMR)晶体学协议或协助涉及机器学习或数据挖掘的应用。这项工作是在国家高磁场实验室进行的,是为期两周的学校活动的一部分,目的是向本科生介绍实验室实践经验,为他们将来从事科学工作或攻读研究生做好准备。
{"title":"Carbon-13 chemical shift tensor measurements for nitrogen-dense compounds","authors":"Sean T. Holmes, Cameron M. Boley, Angelika Dewicki, Zachary T. Gardner, Cameron S. Vojvodin, Robbie J. Iuliucci, Robert W. Schurko","doi":"10.1002/mrc.5422","DOIUrl":"10.1002/mrc.5422","url":null,"abstract":"<p>This paper reports the principal values of the <sup>13</sup>C chemical shift tensors for five nitrogen-dense compounds (i.e., cytosine, uracil, imidazole, guanidine hydrochloride, and aminoguanidine hydrochloride). Although these are all fundamentally important compounds, the majority do not have <sup>13</sup>C chemical shift tensors reported in the literature. The chemical shift tensors are obtained from <sup>1</sup>H→<sup>13</sup>C cross-polarization magic-angle spinning (CP/MAS) experiments that were conducted at a high field of 18.8 T to suppress the effects of <sup>14</sup>N-<sup>13</sup>C residual dipolar coupling. Quantum chemical calculations using density functional theory are used to obtain the <sup>13</sup>C magnetic shielding tensors for these compounds. The best agreement with experiment arises from calculations using the hybrid functional PBE0 or the double-hybrid functional PBE0-DH, along with the triple-zeta basis sets TZ2P or pc-3, respectively, and intermolecular effects modeled using large clusters of molecules with electrostatic embedding through the COSMO approach. These measurements are part of an ongoing effort to expand the catalog of accurate <sup>13</sup>C chemical shift tensor measurements, with the aim of creating a database that may be useful for benchmarking the accuracy of quantum chemical calculations, developing nuclear magnetic resonance (NMR) crystallography protocols, or aiding in applications involving machine learning or data mining. This work was conducted at the National High Magnetic Field Laboratory as part of a 2-week school for introducing undergraduate students to practical laboratory experience that will prepare them for scientific careers or postgraduate studies.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139478773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
James Daley, Joseph Siciliano, Vincent Ferraro, Elodie Sutter, Adam Lounsbery, Nicholas Whiting
The para spin isomer of hydrogen gas possesses high nuclear spin order that can enhance the NMR signals of a variety of molecular species. Hydrogen is routinely enriched in the para spin state by lowering the gas temperature while flowing through a catalyst. Although parahydrogen enrichments approaching 100% are achievable near the H2 liquefaction temperature of 20 K, many experimentalists operate at liquid nitrogen temperatures (77 K) due to the lower associated costs and overall simplicity of the parahydrogen generator. Parahydrogen that is generated at 77 K provides an enrichment value of ~51% of the para spin isomer; while useful, there are many applications that can benefit from low-cost access to higher parahydrogen enrichments. Here, we introduce a method of improving parahydrogen enrichment values using a liquid nitrogen-cooled generator that operates at temperatures less than 77 K. The boiling temperature of liquid nitrogen is lowered through internal evaporation into helium gas bubbles that are injected into the liquid. Changes to liquid nitrogen temperatures and parahydrogen enrichment values were monitored as a function of helium gas flow rate. The injected helium bubbles lowered the liquid nitrogen temperature to ~65.5 K, and parahydrogen enrichments of up to ~59% were achieved; this represents an ~16% improvement compared with the expected parahydrogen fraction at 77 K. This technique is simple to implement in standard liquid nitrogen-cooled parahydrogen generators and may be of interest to a wide range of scientists that require a cost-effective approach to improving parahydrogen enrichment values.
氢气的对位自旋异构体具有很高的核自旋阶次,可以增强各种分子物种的核磁共振信号。在氢气流经催化剂时,通过降低气体温度,可使氢气常规富集为对位自旋态。虽然在 20 K 的氢气液化温度附近可以实现接近 100% 的对位氢富集,但由于相关成本较低且对位氢发生器总体简单,许多实验人员在液氮温度(77 K)下进行操作。在 77 K 温度下生成的对氢提供了约 51% 的对位自旋异构体富集值;虽然有用,但许多应用可以从低成本获取更高的对氢富集值中获益。在此,我们介绍一种利用温度低于 77 K 的液氮冷却发生器提高对氢富集值的方法。液氮的沸腾温度通过内部蒸发进入注入液体的氦气泡而降低。液氮温度和对氢富集值的变化随氦气流速的变化而受到监测。注入的氦气泡将液氮温度降到了约 65.5 K,副氢富集度高达约 59%;与 77 K 时的预期副氢分数相比,提高了约 16%。这种技术在标准液氮冷却副氢发生器中实施起来非常简单,可能会引起需要以经济有效的方法提高副氢富集值的广大科学家的兴趣。
{"title":"Temperature lowering of liquid nitrogen via injection of helium gas bubbles improves the generation of parahydrogen-enriched gas","authors":"James Daley, Joseph Siciliano, Vincent Ferraro, Elodie Sutter, Adam Lounsbery, Nicholas Whiting","doi":"10.1002/mrc.5423","DOIUrl":"10.1002/mrc.5423","url":null,"abstract":"<p>The para spin isomer of hydrogen gas possesses high nuclear spin order that can enhance the NMR signals of a variety of molecular species. Hydrogen is routinely enriched in the para spin state by lowering the gas temperature while flowing through a catalyst. Although parahydrogen enrichments approaching 100% are achievable near the H<sub>2</sub> liquefaction temperature of 20 K, many experimentalists operate at liquid nitrogen temperatures (77 K) due to the lower associated costs and overall simplicity of the parahydrogen generator. Parahydrogen that is generated at 77 K provides an enrichment value of ~51% of the para spin isomer; while useful, there are many applications that can benefit from low-cost access to higher parahydrogen enrichments. Here, we introduce a method of improving parahydrogen enrichment values using a liquid nitrogen-cooled generator that operates at temperatures less than 77 K. The boiling temperature of liquid nitrogen is lowered through internal evaporation into helium gas bubbles that are injected into the liquid. Changes to liquid nitrogen temperatures and parahydrogen enrichment values were monitored as a function of helium gas flow rate. The injected helium bubbles lowered the liquid nitrogen temperature to ~65.5 K, and parahydrogen enrichments of up to ~59% were achieved; this represents an ~16% improvement compared with the expected parahydrogen fraction at 77 K. This technique is simple to implement in standard liquid nitrogen-cooled parahydrogen generators and may be of interest to a wide range of scientists that require a cost-effective approach to improving parahydrogen enrichment values.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139087444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tristan Maschmeyer, Breanna Conklin, Thomas C. Malig, David J. Russell, Kenji L. Kurita, Jason E. Hein, José G. Napolitano
Nuclear magnetic resonance (NMR) spectroscopy is a powerful analytical technique with the ability to acquire both quantitative and structurally insightful data for multiple components in a test sample. This makes NMR spectroscopy a desirable tool to understand, monitor, and optimize chemical transformations. While quantitative NMR (qNMR) approaches relying on internal standards are well-established, using an absolute external calibration scheme is beneficial for reaction monitoring as resonance overlap complications from an added reference material to the sample can be avoided. Particularly, this type of qNMR technique is of interest with benchtop NMR spectrometers as the likelihood of resonance overlap is only enhanced with the lower magnetic field strengths of the used permanent magnets. The included study describes a simple yet robust methodology to determine concentration conversion factors for NMR systems using single- and multi-analyte linear regression models. This approach is leveraged to investigate a pharmaceutically relevant amide coupling batch reaction. An on-line stopped-flow (i.e., interrupted-flow or paused-flow) benchtop NMR system was used to monitor both the 1,1′-carbonyldiimidazole (CDI) promoted acid activation and the amide coupling. The results highlight how quantitative measurements in benchtop NMR systems can provide valuable information and enable analysts to make decisions in real time.
{"title":"A reliable external calibration method for reaction monitoring with benchtop NMR","authors":"Tristan Maschmeyer, Breanna Conklin, Thomas C. Malig, David J. Russell, Kenji L. Kurita, Jason E. Hein, José G. Napolitano","doi":"10.1002/mrc.5421","DOIUrl":"10.1002/mrc.5421","url":null,"abstract":"<p>Nuclear magnetic resonance (NMR) spectroscopy is a powerful analytical technique with the ability to acquire both quantitative and structurally insightful data for multiple components in a test sample. This makes NMR spectroscopy a desirable tool to understand, monitor, and optimize chemical transformations. While quantitative NMR (qNMR) approaches relying on internal standards are well-established, using an absolute external calibration scheme is beneficial for reaction monitoring as resonance overlap complications from an added reference material to the sample can be avoided. Particularly, this type of qNMR technique is of interest with benchtop NMR spectrometers as the likelihood of resonance overlap is only enhanced with the lower magnetic field strengths of the used permanent magnets. The included study describes a simple yet robust methodology to determine concentration conversion factors for NMR systems using single- and multi-analyte linear regression models. This approach is leveraged to investigate a pharmaceutically relevant amide coupling batch reaction. An <i>on-line</i> stopped-flow (<i>i.e.</i>, interrupted-flow or paused-flow) benchtop NMR system was used to monitor both the 1,1′-carbonyldiimidazole (CDI) promoted acid activation and the amide coupling. The results highlight how quantitative measurements in benchtop NMR systems can provide valuable information and enable analysts to make decisions in real time.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5421","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138799996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}