{"title":"Measuring and modeling anisotropy in the NMR of solids","authors":"James K. Harper, Joshua D. Hartman","doi":"10.1002/mrc.5435","DOIUrl":"10.1002/mrc.5435","url":null,"abstract":"","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 3","pages":"124"},"PeriodicalIF":2.0,"publicationDate":"2024-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139717721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ewa K. Nawrocka, Michał Jadwiszczak, Piotr J. Leszczyński, Krzysztof Kazimierczuk
Nuclear magnetic resonance (NMR) spectroscopy is one of the most powerful tools in analytical chemistry. An important step in the analysis of NMR data is the assignment of resonance frequencies to the corresponding atoms in the molecule being investigated. The traditional approach considers the spectrum's characteristic parameters: chemical shift values, internuclear couplings, and peak intensities. In this paper, we show how to support the process of assigning a series of spectra of similar organic compounds by using temperature coefficients, that is, the rates of change in chemical shift values associated with given changes in temperature.
{"title":"Supporting the assignment of NMR spectra with variable-temperature experiments","authors":"Ewa K. Nawrocka, Michał Jadwiszczak, Piotr J. Leszczyński, Krzysztof Kazimierczuk","doi":"10.1002/mrc.5433","DOIUrl":"10.1002/mrc.5433","url":null,"abstract":"<p>Nuclear magnetic resonance (NMR) spectroscopy is one of the most powerful tools in analytical chemistry. An important step in the analysis of NMR data is the assignment of resonance frequencies to the corresponding atoms in the molecule being investigated. The traditional approach considers the spectrum's characteristic parameters: chemical shift values, internuclear couplings, and peak intensities. In this paper, we show how to support the process of assigning a series of spectra of similar organic compounds by using temperature coefficients, that is, the rates of change in chemical shift values associated with given changes in temperature.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 7","pages":"479-485"},"PeriodicalIF":2.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5433","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139662675","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jacob Pellizzari, Ronald Soong, Katelyn Downey, Rajshree Ghosh Biswas, Flavio C. Kock, Katrina Steiner, Benjamin Goerling, Agnes Haber, Venita Decker, Falko Busse, Myrna Simpson, Andre Simpson
Benchtop NMR provides improved accessibility in terms of cost, space, and technical expertise. In turn, this encourages new users into the field of NMR spectroscopy. Unfortunately, many interesting samples in education and research, from beer to whole blood, contain significant amounts of water that require suppression in 1H NMR in order to recover sample information. However, due to the significant reduction in chemical shift dispersion in benchtop NMR systems, the sample signals are much closer to the water resonance compared to those in a corresponding high-field NMR spectrum. Therefore, simply translating solvent suppression experiments intended for high-field NMR instruments to benchtop NMR systems without careful consideration can be problematic. In this study, the effectiveness of several popular water suppression schemes was evaluated for benchtop NMR applications. Emphasis is placed on pulse sequences with no, or few, adjustable parameters making them easy to implement. These fall into two main categories: (1) those based on Pre-SAT including Pre-SAT, PURGE, NOESY-PR, and g-NOESY-PR and (2) those based on binomial inversion including JRS and W5-WATERGATE. Among these schemes, solvent suppression sequences based on Pre-SAT offer a general approach for easy solvent suppression for samples with higher analyte concentrations (sucrose standard and Redbull™). However, for human urine, binomial-like sequences were required. In summary, it is demonstrated that highly efficient water suppression approaches can be implemented on benchtop NMR systems in a simple manner, despite the limited spectral dispersion, further illustrating the potential for widespread implementation of these approaches in education and research.
{"title":"Slice through the water—Exploring the fundamental challenge of water suppression for benchtop NMR systems","authors":"Jacob Pellizzari, Ronald Soong, Katelyn Downey, Rajshree Ghosh Biswas, Flavio C. Kock, Katrina Steiner, Benjamin Goerling, Agnes Haber, Venita Decker, Falko Busse, Myrna Simpson, Andre Simpson","doi":"10.1002/mrc.5431","DOIUrl":"10.1002/mrc.5431","url":null,"abstract":"<p>Benchtop NMR provides improved accessibility in terms of cost, space, and technical expertise. In turn, this encourages new users into the field of NMR spectroscopy. Unfortunately, many interesting samples in education and research, from beer to whole blood, contain significant amounts of water that require suppression in <sup>1</sup>H NMR in order to recover sample information. However, due to the significant reduction in chemical shift dispersion in benchtop NMR systems, the sample signals are much closer to the water resonance compared to those in a corresponding high-field NMR spectrum. Therefore, simply translating solvent suppression experiments intended for high-field NMR instruments to benchtop NMR systems without careful consideration can be problematic. In this study, the effectiveness of several popular water suppression schemes was evaluated for benchtop NMR applications. Emphasis is placed on pulse sequences with no, or few, adjustable parameters making them easy to implement. These fall into two main categories: (1) those based on Pre-SAT including Pre-SAT, PURGE, NOESY-PR, and g-NOESY-PR and (2) those based on binomial inversion including JRS and W5-WATERGATE. Among these schemes, solvent suppression sequences based on Pre-SAT offer a general approach for easy solvent suppression for samples with higher analyte concentrations (sucrose standard and Redbull™). However, for human urine, binomial-like sequences were required. In summary, it is demonstrated that highly efficient water suppression approaches can be implemented on benchtop NMR systems in a simple manner, despite the limited spectral dispersion, further illustrating the potential for widespread implementation of these approaches in education and research.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 6","pages":"463-473"},"PeriodicalIF":2.0,"publicationDate":"2024-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5431","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139570709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Junhe Ma, Qingmei Ye, Rebecca A. Green, John Gurak, Sloan Ayers, Yande Huang, Scott A. Miller
This study presents a straightforward solution to the challenge of elucidating the structures of nitrogen containing compounds undergoing isomerization. When spectral line broadening occurs related to isomerization, be it prototropic tautomerism or bond rotations, this poses a significant obstacle to structural elucidation. By adding acids, we demonstrate a simple approach to overcome this issue and effectively sharpen NMR signals for acid stable prototropic tautomers as well as the conformational isomers containing a morpholine or piperazine ring.
{"title":"Overcoming NMR line broadening of nitrogen containing compounds: A simple solution","authors":"Junhe Ma, Qingmei Ye, Rebecca A. Green, John Gurak, Sloan Ayers, Yande Huang, Scott A. Miller","doi":"10.1002/mrc.5432","DOIUrl":"10.1002/mrc.5432","url":null,"abstract":"<p>This study presents a straightforward solution to the challenge of elucidating the structures of nitrogen containing compounds undergoing isomerization. When spectral line broadening occurs related to isomerization, be it prototropic tautomerism or bond rotations, this poses a significant obstacle to structural elucidation. By adding acids, we demonstrate a simple approach to overcome this issue and effectively sharpen NMR signals for acid stable prototropic tautomers as well as the conformational isomers containing a morpholine or piperazine ring.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 3","pages":"198-207"},"PeriodicalIF":2.0,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139521295","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Daniel Rossado Oliveira, Eric Tavares da Costa, Leonardo Araujo Schenberg, Lucas Colucci Ducati, Claudimir Lucio do Lago
NMR spectroscopy has become a standard technique in studies both on carbon capture and storage. 13C NMR allows the detection of two peaks for carbonated aqueous samples: one for CO2(aq) and another one for the species H2CO3, HCO3−, and CO32−—herein collectively named HxCO3x-2. The chemical shift of this second peak depends on the molar fraction of the three species in equilibrium and has been used to assess the equilibrium between HCO3− and CO32−. The detection of H2CO3 at low pH solutions is hindered, because of the concurrent liberation of CO2 when the medium is acidified. Herein, a valved NMR tube facilitates the detection of the HxCO3x-2 peak across a wide pH range, even at pH 1.8 where the dominant species is H2CO3. The method employed the formation of frozen layers of NaH13CO3 and acid solutions within the tube, which are mixed as the tube reaches room temperature. At this point, the tube is already securely sealed, preventing any loss of CO2 to the atmosphere. A spectrophotometry approach allowed the measurement of the actual pH inside the pressurized NMR tube. The chemical shift for H2CO3 was determined as 160.33 ± 0.03 ppm, which is in good agreement with value obtained by DFT calculations combined with Car–Parrinello molecular dynamics. The H2CO3 pKa value determined by the present method was 3.41 ± 0.03, for 15% D2O aqueous medium and 0.8 mol/L ionic strength. The proposed method can be extended to studies about analogs such as alkyl carbonic and carbamic acids.
{"title":"13C NMR as an analytical tool for the detection of carbonic acid and pKa determination","authors":"Daniel Rossado Oliveira, Eric Tavares da Costa, Leonardo Araujo Schenberg, Lucas Colucci Ducati, Claudimir Lucio do Lago","doi":"10.1002/mrc.5430","DOIUrl":"10.1002/mrc.5430","url":null,"abstract":"<p>NMR spectroscopy has become a standard technique in studies both on carbon capture and storage. <sup>13</sup>C NMR allows the detection of two peaks for carbonated aqueous samples: one for CO<sub>2(aq)</sub> and another one for the species H<sub>2</sub>CO<sub>3</sub>, HCO<sub>3</sub><sup>−</sup>, and CO<sub>3</sub><sup>2−</sup>—herein collectively named H<sub>x</sub>CO<sub>3</sub><sup>x-2</sup>. The chemical shift of this second peak depends on the molar fraction of the three species in equilibrium and has been used to assess the equilibrium between HCO<sub>3</sub><sup>−</sup> and CO<sub>3</sub><sup>2−</sup>. The detection of H<sub>2</sub>CO<sub>3</sub> at low pH solutions is hindered, because of the concurrent liberation of CO<sub>2</sub> when the medium is acidified. Herein, a valved NMR tube facilitates the detection of the H<sub>x</sub>CO<sub>3</sub><sup>x-2</sup> peak across a wide pH range, even at pH 1.8 where the dominant species is H<sub>2</sub>CO<sub>3</sub>. The method employed the formation of frozen layers of NaH<sup>13</sup>CO<sub>3</sub> and acid solutions within the tube, which are mixed as the tube reaches room temperature. At this point, the tube is already securely sealed, preventing any loss of CO<sub>2</sub> to the atmosphere. A spectrophotometry approach allowed the measurement of the actual pH inside the pressurized NMR tube. The chemical shift for H<sub>2</sub>CO<sub>3</sub> was determined as 160.33 ± 0.03 ppm, which is in good agreement with value obtained by DFT calculations combined with Car–Parrinello molecular dynamics. The H<sub>2</sub>CO<sub>3</sub> p<i>K</i><sub><i>a</i></sub> value determined by the present method was 3.41 ± 0.03, for 15% D<sub>2</sub>O aqueous medium and 0.8 mol/L ionic strength. The proposed method can be extended to studies about analogs such as alkyl carbonic and carbamic acids.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 2","pages":"114-120"},"PeriodicalIF":2.0,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139521293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Potentiometry is the primary pH measurement method, but alternatives are sought beyond glass electrodes operative limitations. In nuclear magnetic resonance (NMR) experiments, electrodeless pH sensing is important to track changes along titrations, during chemical reactions or inside compartmentalized environments inaccessible to electrodes, for instance. Although several interesting NMR pH indicators have been already presented, the potential of inorganic phosphate is overlooked, despite its common presence in NMR samples as the buffer main component. Its use for electrodeless pH determination can be expanded by exploiting all its three proton dissociations. This study was aimed at verifying the use of inorganic phosphate 31P chemical shift to sense pH variations, and at exploring the complementary use of pyrophosphate ions to cover a wide pH range. A simple set of equations is presented to utilize both phosphate and pyrophosphate 31P chemical shift in combination for accurate pH determination without a glass electrode over the 5–12 pH range, and without affecting the spectrum of other nuclei. The present study demonstrated an average deviation of 0.09 (maximum <0.2) pH unit from glass electrode measurements. The trimethylphosphate can be used as a suitable chemical shift reference for both 31P and 1H (also 13C), with its hydrolysis being significant only at pH > 12. The method was also demonstrated by determining the pKa of three distinct molecules in a mixture and by comparing the results to those obtained when the glass electrode was used to measure the pH. The approach shown here can be easily tuned to different experimental conditions.
{"title":"The combination of inorganic phosphate and pyrophosphate 31P-NMR for the electrodeless pH determination in the 5–12 range","authors":"Paola Carta, Mariano Andrea Scorciapino","doi":"10.1002/mrc.5429","DOIUrl":"10.1002/mrc.5429","url":null,"abstract":"<p>Potentiometry is the primary pH measurement method, but alternatives are sought beyond glass electrodes operative limitations. In nuclear magnetic resonance (NMR) experiments, electrodeless pH sensing is important to track changes along titrations, during chemical reactions or inside compartmentalized environments inaccessible to electrodes, for instance. Although several interesting NMR pH indicators have been already presented, the potential of inorganic phosphate is overlooked, despite its common presence in NMR samples as the buffer main component. Its use for electrodeless pH determination can be expanded by exploiting all its three proton dissociations. This study was aimed at verifying the use of inorganic phosphate <sup>31</sup>P chemical shift to sense pH variations, and at exploring the complementary use of pyrophosphate ions to cover a wide pH range. A simple set of equations is presented to utilize both phosphate and pyrophosphate <sup>31</sup>P chemical shift in combination for accurate pH determination without a glass electrode over the 5–12 pH range, and without affecting the spectrum of other nuclei. The present study demonstrated an average deviation of 0.09 (maximum <0.2) pH unit from glass electrode measurements. The trimethylphosphate can be used as a suitable chemical shift reference for both <sup>31</sup>P and <sup>1</sup>H (also <sup>13</sup>C), with its hydrolysis being significant only at pH > 12. The method was also demonstrated by determining the pKa of three distinct molecules in a mixture and by comparing the results to those obtained when the glass electrode was used to measure the pH. The approach shown here can be easily tuned to different experimental conditions.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 2","pages":"101-113"},"PeriodicalIF":2.0,"publicationDate":"2024-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139511484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Evan R. McCarney, Kenneth A. Kristoffersen, Kathryn E. Anderssen
Benchtop diffusion nuclear magnetic resonance (NMR) spectroscopy was used to perform quantitative monitoring of enzymatic hydrolysis. The study aimed to test the feasibility of the technology to characterize enzymatic hydrolysis processes in real time. Diffusion ordered spectroscopy (DOSY) was used to measure the signal intensity and apparent self-diffusion constant of solubilized protein in hydrolysate. The NMR technique was tested on an enzymatic hydrolysis reaction of red cod, a lean white fish, by the endopeptidase alcalase at 50°C. Hydrolysate samples were manually transferred from the reaction vessel to the NMR equipment. Measurement time was approximately 3 min per time point. The signal intensity from the DOSY experiment was used to measure protein concentration and the apparent self-diffusion constant was converted into an average molecular weight and an estimated degree of hydrolysis. These values were plotted as a function of time and both the rate of solubilization and the rate of protein breakdown could be calculated. In addition to being rapid and noninvasive, DOSY using benchtop NMR spectroscopy has an advantage compared with other enzymatic hydrolysis characterization methods as it gives a direct measure of average protein size; many functional properties of proteins are strongly influenced by protein size. Therefore, a method to give protein concentration and average size in real time will allow operators to more tightly control production from enzymatic hydrolysis. Although only one type of material was tested, it is anticipated that the method should be applicable to a broad variety of enzymatic hydrolysis feedstocks.
{"title":"Quantitative at-line monitoring of enzymatic hydrolysis using benchtop diffusion nuclear magnetic resonance spectroscopy","authors":"Evan R. McCarney, Kenneth A. Kristoffersen, Kathryn E. Anderssen","doi":"10.1002/mrc.5427","DOIUrl":"10.1002/mrc.5427","url":null,"abstract":"<p>Benchtop diffusion nuclear magnetic resonance (NMR) spectroscopy was used to perform quantitative monitoring of enzymatic hydrolysis. The study aimed to test the feasibility of the technology to characterize enzymatic hydrolysis processes in real time. Diffusion ordered spectroscopy (DOSY) was used to measure the signal intensity and apparent self-diffusion constant of solubilized protein in hydrolysate. The NMR technique was tested on an enzymatic hydrolysis reaction of red cod, a lean white fish, by the endopeptidase alcalase at 50°C. Hydrolysate samples were manually transferred from the reaction vessel to the NMR equipment. Measurement time was approximately 3 min per time point. The signal intensity from the DOSY experiment was used to measure protein concentration and the apparent self-diffusion constant was converted into an average molecular weight and an estimated degree of hydrolysis. These values were plotted as a function of time and both the rate of solubilization and the rate of protein breakdown could be calculated. In addition to being rapid and noninvasive, DOSY using benchtop NMR spectroscopy has an advantage compared with other enzymatic hydrolysis characterization methods as it gives a direct measure of average protein size; many functional properties of proteins are strongly influenced by protein size. Therefore, a method to give protein concentration and average size in real time will allow operators to more tightly control production from enzymatic hydrolysis. Although only one type of material was tested, it is anticipated that the method should be applicable to a broad variety of enzymatic hydrolysis feedstocks.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 6","pages":"452-462"},"PeriodicalIF":2.0,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5427","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139490918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Solution nuclear magnetic resonance (NMR) analysis of polysaccharides can provide valuable information not only on their primary structures but also on their conformation, dynamics, and interactions under physiological conditions. One of the main problems is that non-anomeric 1H signals typically overlap, and this often hinders detailed NMR analysis. Isotope enrichment, such as with 13C and 15N, will add a new dimension to the NMR spectra of polysaccharides, and spectral analysis can be performed with enhanced sensitivity using isolated peaks. For this purpose, here we have prepared uniformly 13C- and/or 15N-labeled chondroitin polysaccharides –4)-β-D-glucuronopyranosyl-(1–3)-2-acetamido-2-deoxy-β-D-galactopyranosyl-(1– with molecular weights in the range from 310 to 460 k by bacterial fermentation. The enrichment ratios for 13C and 15N were 98.9 and 99.8%, respectively, based on the mass spectrometric analysis of the constituent chondroitin disaccharides. 1H and 13C NMR signals were assigned mainly based on HSQC and 13C-detection experiments including INADEQUATE, HETCOR, and HETCOR-TOCSY. The carbonyl carbon signal of the N-acetyl-β-D-galactosamine residue was unambiguously distinguished from the C6 carbon of the β-D-glucuronic acid residue by the observation of 13C peak splitting due to 1JCN coupling in 13C- and 15N-labeled chondroitin. The T2* and T1 were measured and indicate that both rigid and mobile sites are present in the long sequence of chondroitin. The conformation, dynamics, and interactions of chondroitin and its derivatives will be further analyzed based on the results obtained in this study.
多糖的溶液核磁共振(NMR)分析不仅能提供有关多糖一级结构的宝贵信息,还能提供有关多糖在生理条件下的构象、动力学和相互作用的宝贵信息。主要问题之一是非同分异构体的 1 H 信号通常会重叠,这往往会妨碍详细的 NMR 分析。同位素富集(如 13 C 和 15 N)将为多糖的 NMR 图谱增添新的维度,利用分离峰可提高光谱分析的灵敏度。为此,我们通过细菌发酵制备了分子量在 310 至 460 k 范围内的 13 C 和/或 15 N 标记的软骨素多糖-4)-β-D-吡喃葡萄糖基-(1-3)-2-乙酰氨基-2-脱氧-β-D-吡喃半乳糖基-(1-)。根据对组成软骨素二糖的质谱分析,13 C 和 15 N 的富集率分别为 98.9% 和 99.8%。1 H 和 13 C NMR 信号的分配主要基于 HSQC 和 13 C 检测实验,包括 INADEQUATE、HETCOR 和 HETCOR-TOCSY。通过观察 13 C 和 15 N 标记软骨素中 1 JCN 耦合导致的 13 C 峰分裂,可以明确区分 N-乙酰基-β-D-半乳糖胺残基的羰基碳信号和 β-D- 葡糖醛酸残基的 C6 碳信号。对 T2 * 和 T1 的测量表明,软骨素的长序列中既有刚性位点,也有移动位点。根据本研究的结果,我们将进一步分析软骨素及其衍生物的构象、动力学和相互作用。
{"title":"NMR characterization of uniformly 13C- and/or 15N-labeled, unsulfated chondroitins with high molecular weights","authors":"Megumi Ichikawa, Yuya Otsuka, Toshikazu Minamisawa, Noriyoshi Manabe, Yoshiki Yamaguchi","doi":"10.1002/mrc.5426","DOIUrl":"10.1002/mrc.5426","url":null,"abstract":"<p>Solution nuclear magnetic resonance (NMR) analysis of polysaccharides can provide valuable information not only on their primary structures but also on their conformation, dynamics, and interactions under physiological conditions. One of the main problems is that non-anomeric <sup>1</sup>H signals typically overlap, and this often hinders detailed NMR analysis. Isotope enrichment, such as with <sup>13</sup>C and <sup>15</sup>N, will add a new dimension to the NMR spectra of polysaccharides, and spectral analysis can be performed with enhanced sensitivity using isolated peaks. For this purpose, here we have prepared uniformly <sup>13</sup>C- and/or <sup>15</sup>N-labeled chondroitin polysaccharides –4)-β-D-glucuronopyranosyl-(1–3)-2-acetamido-2-deoxy-β-D-galactopyranosyl-(1– with molecular weights in the range from 310 to 460 k by bacterial fermentation. The enrichment ratios for <sup>13</sup>C and <sup>15</sup>N were 98.9 and 99.8%, respectively, based on the mass spectrometric analysis of the constituent chondroitin disaccharides. <sup>1</sup>H and <sup>13</sup>C NMR signals were assigned mainly based on HSQC and <sup>13</sup>C-detection experiments including INADEQUATE, HETCOR, and HETCOR-TOCSY. The carbonyl carbon signal of the <i>N</i>-acetyl-β-D-galactosamine residue was unambiguously distinguished from the C6 carbon of the β-D-glucuronic acid residue by the observation of <sup>13</sup>C peak splitting due to <sup>1</sup><i>J</i><sub>CN</sub> coupling in <sup>13</sup>C- and <sup>15</sup>N-labeled chondroitin. The <i>T</i><sub>2</sub>* and <i>T</i><sub>1</sub> were measured and indicate that both rigid and mobile sites are present in the long sequence of chondroitin. The conformation, dynamics, and interactions of chondroitin and its derivatives will be further analyzed based on the results obtained in this study.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 6","pages":"439-451"},"PeriodicalIF":2.0,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139484262","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ryan Toomey, Jacob Powell, Jacob Cheever, James K. Harper
Since 1993, it has been known that 13C chemical shift tensor (i.e., δ11, δ22, and δ33) provides information sufficient to distinguish between COOH and COO− sites. Herein, four previously unreported metrics are proposed for differentiating COOH/COO− moieties. A new relationship is also introduced that correlates the asymmetry (i.e., δ11–δ22) of COOH sites to the proximity of hydrogen bond donating partners within 2.6 Å with high accuracy (±0.05 Å). Conversely, a limitation to all proposed metrics is that they fail to distinguish between COO− and hydrogen disordered COOH sites. To reconcile this omission, a new approach is proposed based on T1 measurements of both 1H and 13C. The 13C T1 values are particularly sensitive with the T1 for hydrogen disordered COOH moieties found to be nearly six times smaller than T1's from COO− sites.
{"title":"Distinguishing between COOH, COO−, and hydrogen disordered COOH sites in solids with 13C chemical shift anisotropy and T1 measurements","authors":"Ryan Toomey, Jacob Powell, Jacob Cheever, James K. Harper","doi":"10.1002/mrc.5425","DOIUrl":"10.1002/mrc.5425","url":null,"abstract":"<p>Since 1993, it has been known that <sup>13</sup>C chemical shift tensor (i.e., δ<sub>11</sub>, δ<sub>22</sub>, and δ<sub>33</sub>) provides information sufficient to distinguish between COOH and COO<sup>−</sup> sites. Herein, four previously unreported metrics are proposed for differentiating COOH/COO<sup>−</sup> moieties. A new relationship is also introduced that correlates the asymmetry (i.e., δ<sub>11</sub>–δ<sub>22</sub>) of COOH sites to the proximity of hydrogen bond donating partners within 2.6 Å with high accuracy (±0.05 Å). Conversely, a limitation to all proposed metrics is that they fail to distinguish between COO<sup>−</sup> and hydrogen disordered COOH sites. To reconcile this omission, a new approach is proposed based on <i>T</i><sub>1</sub> measurements of both <sup>1</sup>H and <sup>13</sup>C. The <sup>13</sup>C <i>T</i><sub>1</sub> values are particularly sensitive with the <i>T</i><sub>1</sub> for hydrogen disordered COOH moieties found to be nearly six times smaller than <i>T</i><sub>1</sub>'s from COO<sup>−</sup> sites.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 3","pages":"190-197"},"PeriodicalIF":2.0,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139490481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Amy Jenne, Ronald Soong, Katelyn Downey, Rajshree Ghosh Biswas, Venita Decker, Falko Busse, Benjamin Goerling, Agnes Haber, Myrna J. Simpson, Andre J. Simpson
In recent years there has been a renewed interest in benchtop NMR. Given their lower cost of ownership, smaller footprint, and ease of use, they are especially suited as an educational tool. Here, a new experiment targeted at upper-year undergraduates and first-year graduate students follows the conversion of D-glucose into ethanol at low-field. First, high and low-field data on D-glucose are compared and students learn both the Hz and ppm scales and how J-coupling is field-independent. The students then acquire their own quantitative NMR datasets and perform the quantification using an Electronic Reference To Access In Vivo Concentration (ERETIC) technique. To our knowledge ERETIC is not currently taught at the undergraduate level, but has an advantage in that internal standards are not required; ideal for following processes or with future use in flow-based benchtop monitoring. Using this quantitative data, students can relate a simple chemical process (fermentation) back to more complex topics such as reaction kinetics, bridging the gaps between analytical and physical chemistry. When asked to reflect on the experiment, students had an overwhelmingly positive experience, citing agreement with learning objectives, ease of understanding the protocol, and enjoyment. Each of the respondents recommended this experiment as a learning tool for others. This experiment has been outlined for other instructors to utilize in their own courses across institutions, with the hope that a continued expansion of low-field NMR will increase accessibility and learning opportunities at the undergraduate level.
{"title":"Brewing alcohol 101: An undergraduate experiment utilizing benchtop NMR for quantification and process monitoring","authors":"Amy Jenne, Ronald Soong, Katelyn Downey, Rajshree Ghosh Biswas, Venita Decker, Falko Busse, Benjamin Goerling, Agnes Haber, Myrna J. Simpson, Andre J. Simpson","doi":"10.1002/mrc.5428","DOIUrl":"10.1002/mrc.5428","url":null,"abstract":"<p>In recent years there has been a renewed interest in benchtop NMR. Given their lower cost of ownership, smaller footprint, and ease of use, they are especially suited as an educational tool. Here, a new experiment targeted at upper-year undergraduates and first-year graduate students follows the conversion of D-glucose into ethanol at low-field. First, high and low-field data on D-glucose are compared and students learn both the Hz and ppm scales and how J-coupling is field-independent. The students then acquire their own quantitative NMR datasets and perform the quantification using an Electronic Reference To Access In Vivo Concentration (ERETIC) technique. To our knowledge ERETIC is not currently taught at the undergraduate level, but has an advantage in that internal standards are not required; ideal for following processes or with future use in flow-based benchtop monitoring. Using this quantitative data, students can relate a simple chemical process (fermentation) back to more complex topics such as reaction kinetics, bridging the gaps between analytical and physical chemistry. When asked to reflect on the experiment, students had an overwhelmingly positive experience, citing agreement with learning objectives, ease of understanding the protocol, and enjoyment. Each of the respondents recommended this experiment as a learning tool for others. This experiment has been outlined for other instructors to utilize in their own courses across institutions, with the hope that a continued expansion of low-field NMR will increase accessibility and learning opportunities at the undergraduate level.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":"62 6","pages":"429-438"},"PeriodicalIF":2.0,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5428","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139478772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}