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Variations in lignin content deposited in the Congo fan and its potential for oxidative degradation 刚果扇沉积木质素含量的变化及其氧化降解的潜力
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-04 DOI: 10.1016/j.marchem.2025.104569
Louis C. Bondurant , Megan L. Baker , Sophie Hage , Peter J. Talling , Patrick G. Hatcher
The deposition of terrigenous organic carbon (tOC) in offshore deep-marine settings has traditionally been viewed as inconsequential for organic carbon burial. However, it has been shown that deep-sea sediment flows, turbidity currents, can contribute significantly to the burial of tOC. Elemental, isotopic, and molecular data were obtained on sediment samples from three areas within and adjacent to the Congo Deep-Sea Fan. The elemental, organic geochemical, and isotopic data agree well with previous studies from the Congo Fan, which show that terrigenous organic matter from the Congo River extends seaward in the axis of the submarine canyon to abyssal depths. Using advanced solid-state 13C NMR and TMAH thermochemolysis data we verify that a significant amount of lignin is exported to the canyon (∼14 % wt. lignin) and the distal lobe (∼16 % wt. lignin) sediments. The basin plain contains no detectable lignin but does show the presence of terrigenous long-chain fatty acids having an even carbon number predominance. Following a laboratory oxidation experiment on sediments from the distal lobe for 6 d there was an organic carbon mass loss of 59.8 % and the solid-state 13C NMR spectrum shows a major reduction in peaks associated with carbohydrate-like and lignin molecules and a relative increase in aliphatic molecules. This shows that terrigenous lignin molecules can be remineralized to CO2 and/or altered to structures that no longer resemble that of lignin through oxidative degradation processes. This would have a potentially significant implication on what is traditionally viewed as autochthonous marine organic matter.
传统上认为,近海深海环境中陆源有机碳(tOC)的沉积与有机碳埋藏无关。然而,已有研究表明,深海沉积物流动,即浊度流,对tOC的埋藏有重要贡献。元素、同位素和分子数据来自刚果深海扇内部和邻近的三个区域的沉积物样本。元素、有机地球化学和同位素数据与刚果扇的研究结果一致,表明来自刚果河的陆源有机质沿海底峡谷轴线向海洋延伸至深海深处。使用先进的固态13C NMR和TMAH热化学分解数据,我们验证了大量的木质素被出口到峡谷(~ 14% wt.木质素)和远叶(~ 16% wt.木质素)沉积物。盆地平原不含可检测到的木质素,但确实显示出具有偶数碳数优势的陆源长链脂肪酸的存在。在对来自远叶的沉积物进行6天的实验室氧化实验后,有机碳质量损失了59.8%,固态13C核磁共振光谱显示与碳水化合物和木质素分子相关的峰大幅减少,脂肪分子相对增加。这表明陆源木质素分子可以通过氧化降解过程再矿化为CO2和/或改变为不再类似木质素的结构。这将对传统上被视为原生海洋有机物的物质产生潜在的重大影响。
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引用次数: 0
Mapping of dissolved black carbon in the Atlantic Ocean 大西洋中溶解的黑碳的地图
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-10-01 DOI: 10.1016/j.marchem.2025.104568
Nina Davtian , Nuria Penalva , Oriol Teruel , Pau Comes , Antoni Rosell-Melé , Joan Villanueva
Oceanic dissolved black carbon (DBC) is the subject of a conundrum between the dominant riverine inputs in terms of mass flux and its stable and radiogenic carbon isotope composition inconsistent with a predominant riverine origin. Here, we analyzed seawater samples within specific and contrasting water masses along several latitudinal and longitudinal transects across the Atlantic Ocean to quantify DBC and map its latitudinal and water depth changes in this ocean. After comparing latitudinal changes in surface water DBC properties with those in atmospheric pyrogenic carbon inputs from seasonal, massive grass burning events in the African Savanna, we could not demonstrate the significance of atmospheric deposition as a non-riverine source of DBC in the Atlantic Ocean, likely due to the balance by DBC photo-bleaching. We found constant DBC concentrations and increasing trends in the condensation degree of DBC (i.e., B6CA:B5CA molar ratio) from surface to deep Atlantic waters and from the South Atlantic to the North Atlantic within individual shallow to deep water masses. Overall, our mapping of DBC in the Atlantic Ocean highlights the need to explore the following alternative hypotheses in the future to better understand the cycling of oceanic DBC: 1) enhanced regional atmospheric BC deposition from African savanna grassland fires impact particulate rather than dissolved BC in the Atlantic Ocean, 2) oceanic DBC has a predominantly non-pyrogenic origin, and 3) exports of terrigenous DBC across the Atlantic Ocean accompany those of terrigenous humic-like compounds from the North Atlantic via meridional circulation.
海洋溶解黑碳(DBC)在质量通量方面的主要河流输入与其稳定的放射性碳同位素组成与主要河流来源不一致之间是一个难题。在这里,我们分析了大西洋上几个纬度和纵向断面上特定和对比水团的海水样本,以量化DBC并绘制其在该海洋中的纬度和水深变化。在比较了非洲热带稀树草原季节性大规模烧草事件引起的地表水DBC特性的纬度变化与大气热原碳输入的纬度变化后,我们无法证明大气沉积作为大西洋中DBC的非河流来源的重要性,这可能是由于DBC光漂白的平衡。结果表明,从大西洋表层到大西洋深层,从南大西洋到北大西洋,各个浅水到深水水体中,DBC浓度保持不变,其凝结度(即B6CA:B5CA摩尔比)呈增加趋势。总的来说,我们对大西洋DBC的映射强调了未来探索以下替代假设的必要性,以更好地理解海洋DBC的循环:1)来自非洲热带稀树草原大火的区域大气BC沉积增强,影响了大西洋中颗粒而不是溶解的BC; 2)海洋DBC主要是非热成因的;3)陆源DBC通过经向环流与北大西洋的陆源腐殖质样化合物一起通过大西洋出口。
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引用次数: 0
Dissolved iron distribution and budget in the Solomon Sea 所罗门海溶解铁的分布与收支
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-29 DOI: 10.1016/j.marchem.2025.104567
Géraldine Sarthou , Eva Bucciarelli , Fabien Quéroué , François Lacan , Hélène Planquette , Viet Q. Pham , Maxime Grand , Catherine Pradoux , Martine Rodier , Sophie Bonnet , Gérard Eldin , Sophie Cravatte , Catherine Jeandel , Alexandre Ganachaud
As part of the PANDORA cruise (GEOTRACES GP12), concentrations of dissolved iron (dFe) were measured at 11 stations inside and outside the Solomon Sea, a semi-enclosed sea in the western tropical Pacific, with complex topography and straits, and strong western boundary currents supplying the equatorial current system. These measurements aimed to better assess the various sources of dFe in our study area and the Solomon Sea's potential as a source of dFe for the Equatorial Undercurrent (EUC). A simple box model allows calculating and discussing the fate of the dFe in the different water layers flowing through the Solomon Sea and suggests that the amount of dFe enrichment within the enclosed sea was not significant for the lower thermocline and intermediate waters, indicating that most of the dFe was acquired prior to reaching the Solomon Sea at the entrance and/or that inputs are approximately balanced by scavenging within the basin for these two layers. In contrast, dFe enrichment was significant for the upper thermocline layer and the deep waters, highlighting enrichments from external sources, as well as combination of internal processes, such as scavenging and/or organic complexation. The relative dFe contribution of the Solomon Sea to EUC was 20 %, on average. Other sources might thus provide dFe to the EUC, along the water transport downstream of the Solomon Sea (e.g. Bismarck Sea) or from the northern hemisphere. Diazotrophs such as Trichodesmium might also contribute to the dFe enrichment of the EUC after export and remineralization at depth outside the Solomon Sea.
作为潘多拉巡航(GEOTRACES GP12)的一部分,在所罗门海内外的11个站点测量了溶解铁(dFe)的浓度。所罗门海位于热带太平洋西部的半封闭海域,地形复杂,海峡狭窄,有强大的西部边界流提供赤道流系统。这些测量旨在更好地评估我们研究区域中dFe的各种来源,以及所罗门海作为赤道潜流(EUC) dFe来源的潜力。一个简单的箱形模型可以计算和讨论流经所罗门海的不同水层中dFe的命运,并表明封闭海中dFe的富集量对于下温跃层和中间水域来说并不显著,这表明大部分dFe是在进入所罗门海之前获得的,并且/或者这两个水层的输入通过盆地内的清除大致平衡。相反,dFe在上层温跃层和深水中富集显著,突出来自外部来源的富集,以及内部过程的组合,如清除和/或有机络合作用。所罗门海对欧盟的相对铁贡献平均为20%。因此,其他来源可能沿着所罗门海(如俾斯麦海)下游的水运或从北半球向欧盟提供dFe。重氮营养体(如Trichodesmium)也可能有助于出口后的EUC的dFe富集和所罗门海以外深度的再矿化。
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引用次数: 0
Groundwater modulates nutrient dynamics in a freshened saltmarsh tidal creek 地下水调节新鲜盐沼潮汐溪的营养动态
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-27 DOI: 10.1016/j.marchem.2025.104566
Jianan Liu , Xueqing Yu , Tong Peng , Xinyi Lin , Jinzhou Du
Saltmarsh tidal creeks play a critical role in coastal nutrient cycling, yet submarine groundwater discharge (SGD), as a key driver, remains poorly understood. Research on SGD-derived outwelling of multiple nutrient species is notably scarce in low-salinity estuarine saltmarshes influenced by large rivers. Utilizing long-lived radium isotopes (226Ra and 228Ra) combined with high-frequency monitoring encompassing the most comprehensive species of dissolved nutrient to date during both spring and neap tides, we quantified SGD fluxes and their contribution to nutrient outwelling in a low-salinity saltmarsh tidal creek system of the Yangtze River Estuary. Results showed that driven by tidal pumping, SGD flux during spring tides (12 ± 5.9 cm d−1) was significantly greater than during neap tides (0.77 ± 0.42 cm d−1), along with corresponding differences in nutrient transport fluxes. SGD served as a source of dissolved inorganic nitrogen (DIN) and dissolved silicate (DSi) to the tidal creek system. Specifically, NH4-N contributed approximately 93 % of the outwelling flux, while SGD-derived DSi accounted for 31–36 % of the DSi outwelling. Conversely, SGD functioned as a sink for dissolved phosphorus (inorganic + organic), capable of removing phosphorus in the tidal creek waters. More importantly, due to nitrogen input via SGD and its retention of phosphorus, both groundwater and ebbing tidal creek waters exhibited nitrogen-to‑phosphorus (N/P) ratios significantly exceeding the Redfield ratio. Although the saltmarshes partially mitigated the elevated N/P ratio during the outwelling process, the imbalanced N/P ratio in SGD-driven outwelling still poses risks of inducing coastal eutrophication and harmful algal blooms. This study unveils the crucial regulatory role of SGD in nutrient dynamics within low-salinity saltmarshes, emphasizing the necessity to incorporate groundwater-surface water interactions into coastal nutrient management and ecological conservation.
盐沼潮汐溪在沿海养分循环中起着关键作用,但作为关键驱动因素的海底地下水排放(SGD)仍然知之甚少。在受大河影响的低盐度河口盐沼中,对sgd衍生的多种营养物质外溢的研究尤其缺乏。利用长寿命镭同位素(226Ra和228Ra),结合迄今为止春潮和小潮期间最全面的溶解营养物种类的高频监测,我们量化了长江口低盐度盐沼潮汐溪系统的SGD通量及其对营养物外移的贡献。结果表明,在潮汐泵送的驱动下,春潮期间的SGD通量(12±5.9 cm d - 1)显著大于小潮期间的SGD通量(0.77±0.42 cm d - 1),同时营养物运输通量也存在相应差异。SGD是潮汐溪系统中溶解无机氮(DIN)和溶解硅酸盐(DSi)的来源。具体而言,NH4-N贡献了约93%的外溢通量,而sgd衍生的DSi占DSi外溢的31 - 36%。相反,SGD作为溶解磷(无机+有机)的汇,能够去除潮溪水体中的磷。更重要的是,由于SGD的氮输入及其对磷的滞留,地下水和退潮溪水的氮磷比(N/P)显著超过Redfield比。尽管盐沼在外溢过程中部分缓解了氮磷比的升高,但sgd驱动的外溢中氮磷比的不平衡仍然存在诱发沿海富营养化和有害藻华的风险。本研究揭示了SGD在低盐度盐沼营养动态中的重要调节作用,强调了将地下水-地表水相互作用纳入沿海营养管理和生态保护的必要性。
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引用次数: 0
Unraveling sedimentary organic matter in the Oiapoque estuarine-marine ecosystem: Insights from elemental composition and isotopic fingerprints on the Amazon coast 揭示Oiapoque河口-海洋生态系统中的沉积有机质:来自亚马逊海岸元素组成和同位素指纹的见解
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-15 DOI: 10.1016/j.marchem.2025.104565
Yasmym Schütz de Vincenzi Weirich , Carlos Eduardo de Rezende , Fernanda Maria de Souza , Valdenira Ferreira dos Santos , César C. Martins
The Oiapoque River estuary, located on the border between Brazil and French Guiana, is an understudied Amazon region characterized by intense discharge of fluvial sediment and terrestrial organic matter (OM). Influenced by environmental factors such as temperature, salinity, tides, and currents, the sedimentary OM composition reflects both autochthonous production and adjacent land biomass. This study aimed to identify and differentiate primary sources of sedimentary OM in the Amazon coastal zone using geochemical parameters such as total organic carbon (TOC), total nitrogen (TN), their relative atomic ratio (expressed as C/N), and carbon and nitrogen isotopic ratios (δ13C and δ15N). Two surface sediment sampling campaigns were conducted in 2018 during the wet and dry seasons. The sediments showed a strong correlation between TOC and TN across both campaigns (R2 = 0.98 and 0.94); however, results suggested the contribution of inorganic nitrogen forms (e.g., NH₄+). The C/N ratio indicated predominant OM from terrigenous input (∼24) at upstream sites and marine input (∼5 and ∼ 9) at downstream ones. The δ13C analysis revealed low variability along the estuary, with values around −27 ‰ upstream and near the mouth (typical of land or C3 plant contributions), intermediate values around −24 ‰ in the central portion (mixed sources), and higher values around −22 ‰ near the mouth (marine inputs). The δ15N values (∼3 ‰) were primarily found in the inner region, at the center of the estuary, and near the mouth where river discharges occur, associated with terrestrial plants. The elemental and isotopic composition of the sedimentary OM indicates a predominance of terrigenous OM, particularly near areas influenced by the Uáça and Ouanary rivers, reflecting land use and human occupation. Estuarine dynamics, influenced by rainfall and tidal currents, affect the distribution of marine inputs and the mixture of allochthonous and autochthonous sources throughout the estuary.
Oiapoque河河口位于巴西和法属圭亚那之间的边界,是一个未被充分研究的亚马逊地区,其特点是河流沉积物和陆相有机质(OM)的大量排放。受温度、盐度、潮汐和海流等环境因素的影响,沉积物有机质组成既反映了本地生产,也反映了邻近陆地生物量。利用总有机碳(TOC)、总氮(TN)及其相对原子比(以C/N表示)、碳氮同位素比(δ13C和δ15N)等地球化学参数,对亚马孙海岸带沉积有机质的主要来源进行了识别和区分。2018年在干湿季节进行了两次地表沉积物采样活动。在两个运动中,沉积物TOC与TN具有较强的相关性(R2 = 0.98和0.94);然而,结果表明无机氮形式(如NH₄+)的贡献。C/N比值表明,上游的OM主要来自陆源输入(~ 24),下游的OM主要来自海洋输入(~ 5和~ 9)。δ13C沿河口变化较小,上游和河口附近(典型的陆地或C3植物贡献)的δ13C值在- 27‰左右,中部(混合源)的δ13C值在- 24‰左右,河口附近(海洋输入)的δ13C值在- 22‰左右。δ15N值(~ 3‰)主要分布在河口内、河口中心和河口附近,与陆生植物有关。沉积有机质的元素和同位素组成表明陆源有机质占主导地位,特别是在受Uáça和Ouanary河影响的地区附近,反映了土地利用和人类活动。受降雨和潮流影响的河口动力学影响了整个河口的海洋输入分布以及外来和本地源的混合。
{"title":"Unraveling sedimentary organic matter in the Oiapoque estuarine-marine ecosystem: Insights from elemental composition and isotopic fingerprints on the Amazon coast","authors":"Yasmym Schütz de Vincenzi Weirich ,&nbsp;Carlos Eduardo de Rezende ,&nbsp;Fernanda Maria de Souza ,&nbsp;Valdenira Ferreira dos Santos ,&nbsp;César C. Martins","doi":"10.1016/j.marchem.2025.104565","DOIUrl":"10.1016/j.marchem.2025.104565","url":null,"abstract":"<div><div>The Oiapoque River estuary, located on the border between Brazil and French Guiana, is an understudied Amazon region characterized by intense discharge of fluvial sediment and terrestrial organic matter (OM). Influenced by environmental factors such as temperature, salinity, tides, and currents, the sedimentary OM composition reflects both autochthonous production and adjacent land biomass. This study aimed to identify and differentiate primary sources of sedimentary OM in the Amazon coastal zone using geochemical parameters such as total organic carbon (TOC), total nitrogen (TN), their relative atomic ratio (expressed as C/N), and carbon and nitrogen isotopic ratios (δ<sup>13</sup>C and δ<sup>15</sup>N). Two surface sediment sampling campaigns were conducted in 2018 during the wet and dry seasons. The sediments showed a strong correlation between TOC and TN across both campaigns (R<sup>2</sup> = 0.98 and 0.94); however, results suggested the contribution of inorganic nitrogen forms (e.g., NH₄<sup>+</sup>). The C/N ratio indicated predominant OM from terrigenous input (∼24) at upstream sites and marine input (∼5 and ∼ 9) at downstream ones. The δ<sup>13</sup>C analysis revealed low variability along the estuary, with values around −27 ‰ upstream and near the mouth (typical of land or C3 plant contributions), intermediate values around −24 ‰ in the central portion (mixed sources), and higher values around −22 ‰ near the mouth (marine inputs). The δ<sup>15</sup>N values (∼3 ‰) were primarily found in the inner region, at the center of the estuary, and near the mouth where river discharges occur, associated with terrestrial plants. The elemental and isotopic composition of the sedimentary OM indicates a predominance of terrigenous OM, particularly near areas influenced by the Uáça and Ouanary rivers, reflecting land use and human occupation. Estuarine dynamics, influenced by rainfall and tidal currents, affect the distribution of marine inputs and the mixture of allochthonous and autochthonous sources throughout the estuary.</div></div>","PeriodicalId":18219,"journal":{"name":"Marine Chemistry","volume":"273 ","pages":"Article 104565"},"PeriodicalIF":2.5,"publicationDate":"2025-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145096881","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Factors influencing the variability of stable isotopes of carbon, nitrogen, and sulfur in benthic macrofauna from Admiralty Bay, maritime Antarctic 影响南极海相金钟湾底栖大型动物碳、氮、硫稳定同位素变异的因素
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-15 DOI: 10.1016/j.marchem.2025.104564
Agnieszka Jędruch , Marcelina Ziółkowska , Natalia Bulik , Piotr Paneth , Ewa Korejwo , Dominika Saniewska
This study examines benthic macrofauna from Admiralty Bay, maritime Antarctic, using triple stable isotope approach (δ13C, δ15N, and δ34S) to assess the impact of melting glaciers and human activity on trophic interactions in this unique ecosystem. Four species – the limpet Nacella concinna, the sea urchin Sterechinus neumayeri, the starfish Odontaster validus, and the brittle star Ophionotus victoriae – were analyzed to characterize their isotopic composition and trophic niches. The results indicate that diet and feeding strategies were the main drivers of δ13C, δ15N, and δ34S variability, demonstrating the utility of a multi-isotope approach for revealing diet composition, trophic plasticity, and benthic–pelagic coupling in polar benthic communities. Elevated δ13C values, typical of benthic primary producers, and depleted δ34S values, indicative of sulfur derived from sediments, confirmed a strong reliance of benthic macrofauna on benthic food sources. In contrast, decrease in δ13C together with higher and typically marine δ34S, can indicate higher contribution of pelagic diet sources. Spatial isotopic patterns further revealed areas influenced by glacial melt and shifting ice conditions, where consumers were relatively enriched in δ13C and δ15N compared to sites with rather open-ocean conditions. Notably, δ34S emerged as a possible early indicator of human-related disturbance, with depletion reflecting increased anthropogenic sulfur inputs and reduced oxygen conditions in benthic habitats linked to nutrient enrichment. Concurrent to 34S-depletion enrichment in 15N supports the role of nitrogen inputs from human activities. These findings demonstrate that stable isotopic tracers, particularly when incorporating sulfur alongside carbon and nitrogen, provide a powerful tool to detect and interpret ecological responses to both natural and anthropogenic drivers, offering insights into local ecosystem shifts and their broader implications for Antarctic food webs under climate change and growing human pressure.
本研究利用三稳定同位素方法(δ13C、δ15N和δ34S)分析了南极海洋金钟湾的底栖大型动物,评估了冰川融化和人类活动对这一独特生态系统营养相互作用的影响。本文分析了四种海洋生物(帽贝、海胆、海星、蛇尾海星)的同位素组成和营养生态位特征。结果表明,饮食和取食策略是极地底栖生物群落δ13C、δ15N和δ34S变化的主要驱动因素,证明了多同位素方法在揭示极地底栖生物群落的饮食组成、营养可塑性和底-上层耦合方面的效用。δ13C值升高是底栖生物初级生产者的典型特征,δ34S值下降表明沉积物中含有硫,这证实了底栖大型动物对底栖动物食物来源的强烈依赖。δ13C降低,δ34S较高,且典型为海洋δ34S,说明上层海洋饮食源的贡献较大。空间同位素模式进一步揭示了受冰川融化和移动冰条件影响的地区,与相对开放的海洋条件相比,这些地区的消费者δ13C和δ15N相对丰富。值得注意的是,δ34S可能是人类相关干扰的早期指标,其耗竭反映了与养分富集有关的底栖生物栖息地中人为硫输入增加和氧气条件降低。与34s耗竭同时发生的15N富集支持人类活动氮输入的作用。这些发现表明,稳定的同位素示踪剂,特别是将硫与碳和氮结合在一起的示踪剂,为检测和解释对自然和人为驱动因素的生态反应提供了强有力的工具,为了解当地生态系统的变化及其在气候变化和日益增长的人类压力下对南极食物网的更广泛影响提供了见解。
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引用次数: 0
Ferrioxamine X1 mediated iron interaction with FoxA receptor in marine Pseudomonas stutzeri: An in silico approach 铁胺X1介导的铁与FoxA受体在海洋stutzeri假单胞菌中的相互作用:一种计算机方法
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-13 DOI: 10.1016/j.marchem.2025.104563
Pratika Singh , Parli Venkateswaran Bhaskar , Alok Kumar Sinha , Vitthal T. Barvkar , Sarat Chandra Tripathy
The low iron concentrations in the Equatorial Indian Ocean (EIO) create a challenging environment for microbial life, requiring microorganisms to adapt. One strategy involves the production of siderophores, organic compounds that bind to Fe3+ ions and facilitate their uptake through specific receptors. Multiple siderophores may improve the bioavailability of iron due to the varied structures of siderophores and receptors. Since a single receptor may bind multiple siderophores, it is imperative to understand the molecular mechanisms underlying the interaction between siderophores and their receptors. This study used an in silico approach to explore these interactions. Pseudomonas stutzeri ATCC 17588, isolated from the EIO, was optimized for siderophore production under various growth conditions and analyzed using LC-qTOF-MS. The tertiary structure of the FoxA receptor and its interaction with the ferrioxamine X1-Fe3+ complex were examined through molecular docking. P. stutzeri ATCC 17588 produced multiple siderophores, including ferrioxamine X1, with optimal production at 10 nM iron concentration, pH 8.5, and 25 °C. The interaction energies between ferrioxamine X1-Fe3+ and the FoxA receptor were − 40.81 kcal/mol and − 9.3 kJ/mol, respectively, suggesting stable complexes. The predicted FoxA structure, validated through various analyses, revealed helices interspersed with strands. Hydrophobic interactions, involving residues such as Gln287, Arg792, and Glu180, were primarily responsible for the binding of ferrioxamine X1-Fe3+ to the FoxA receptor. This study sheds light on the role of ferrioxamine X1 in iron acquisition by P. stutzeri in the iron-limited EIO and enhances our understanding of microbial metal-ligand interactions in marine ecosystems.
赤道印度洋(EIO)的低铁浓度为微生物生命创造了一个具有挑战性的环境,需要微生物适应。一种策略涉及到铁载体的产生,这是一种与铁离子结合并促进其通过特定受体吸收的有机化合物。由于铁载体和受体的结构不同,多种铁载体可以提高铁的生物利用度。由于单一受体可以结合多个铁载体,因此了解铁载体与其受体之间相互作用的分子机制是必要的。本研究使用了一种计算机方法来探索这些相互作用。从EIO中分离得到假单胞菌stutzeri ATCC 17588,对其在不同生长条件下产铁载体进行了优化,并用LC-qTOF-MS对其进行了分析。通过分子对接研究了FoxA受体的三级结构及其与铁胺X1-Fe3+络合物的相互作用。P. stutzeri ATCC 17588产生多种铁载体,包括铁胺X1,铁浓度为10 nM, pH为8.5,温度为25°C。铁胺X1-Fe3+与FoxA受体的相互作用能分别为- 40.81 kcal/mol和- 9.3 kJ/mol,配合物稳定。预测的FoxA结构,通过各种分析验证,显示出螺旋穿插着链。涉及Gln287、Arg792和Glu180等残基的疏水相互作用是铁胺X1-Fe3+与FoxA受体结合的主要原因。该研究揭示了铁胺X1在P. stutzeri在铁受限的EIO中获取铁的作用,并增强了我们对海洋生态系统中微生物金属-配体相互作用的理解。
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引用次数: 0
Seasonal dynamics of DOM diversity and molecular composition in the NW Mediterranean Sea 地中海西北部DOM多样性和分子组成的季节动态
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-11 DOI: 10.1016/j.marchem.2025.104562
Nawal Bouchachi , Hélène Lavanant , Carlos Afonso , Isabelle Schmitz , Barbara Marie , Ingrid Obernosterer , Eva Ortega-Retuerta
In the Mediterranean Sea, an accumulation of dissolved organic matter (DOM) is observed during the stratified summer period, which is decoupled from the spring phytoplankton maxima. This has been classically explained by nutrient limitation, that hampers prokaryotic DOM uptake of the labile DOM released by phytoplankton. However, relatively high heterotrophic prokaryotic activity in summer led us to hypothesize that the accumulated DOM might be recalcitrant and derived from these microorganisms. To test this, we tracked the seasonality of DOM molecular composition and chemical diversity using FT-ICR MS from 2019 to 2021 in the NW Mediterranean Sea, and framed it using a broad suite of environmental and biological parameters. Our results reveal a clear seasonal variation in DOM molecular composition and diversity in the surface mixed layer. Changes in composition reflected a higher proportion of molecular formulae containing CHO in spring and a higher proportion of molecular formulae containing CHOS and CHONS in summer. Proxies of DOM recalcitrance, such as aromaticity, unsaturation, and molecular size, were higher in summer, confirming our hypothesis of an accumulation of recalcitrant DOM in summer. In parallel, an increase in DOM diversity (as number of total molecular formulae, their relative intensity, their average distance (Dist) in the van Krevelen space and their functional diversity) was observed, suggesting that the accumulated DOM in summer is likely the result of the interplay between different processes including dissolved primary production, photodegradation and prokaryotic activity. Our results may have significant implications for carbon sequestration through the microbial carbon pump in the Mediterranean Sea as this DOM accumulated in the surface is likely to be stored once exported into deep layers.
在地中海,在分层的夏季观测到溶解有机物(DOM)的积累,这与春季浮游植物的最大值脱钩。这通常被解释为营养限制,这阻碍了原核生物对浮游植物释放的不稳定DOM的吸收。然而,夏季相对较高的异养原核生物活性使我们假设积累的DOM可能是顽固性的,来源于这些微生物。为了验证这一点,我们使用FT-ICR MS追踪了2019年至2021年地中海西北部DOM分子组成和化学多样性的季节性,并使用一系列广泛的环境和生物参数对其进行了构建。我们的研究结果揭示了表层混合层DOM分子组成和多样性的明显季节性变化。组分的变化反映出春季含有CHO的分子式比例较高,夏季含有CHOS和CHONS的分子式比例较高。表征DOM顽固性的指标,如芳香性、不饱和度和分子大小在夏季较高,证实了我们的假设,即顽固性DOM在夏季积累。同时,DOM多样性(总分子式数、相对强度、van Krevelen空间平均距离(Dist)和功能多样性)均有所增加,表明夏季DOM的积累可能是溶解初级产物、光降解和原核活性等不同过程相互作用的结果。我们的研究结果可能对通过地中海微生物碳泵进行碳固存具有重要意义,因为这种积聚在表层的DOM一旦出口到深层就可能被储存起来。
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引用次数: 0
Enhanced microbial consumption of carbon-rich marine organic matter at experimentally elevated temperatures dictated by substrate C:N:P stoichiometry 根据底物C:N:P化学计量学,在实验升高的温度下,富碳海洋有机物的微生物消耗增强
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-04 DOI: 10.1016/j.marchem.2025.104555
Sarah M. Benson , Robert T. Letscher
Marine microbes are vital to oceanic ecosystems and influence the global climate through their paramount role in Earth's biogeochemical cycles. With this intricate role in ecosystems, it is important to understand the effect of increasing ocean temperatures on the cycling of organic matter (OM), which is hypothesized to contribute a positive feedback to future warming via an acceleration in microbial respiration of OM to CO2. We experimentally investigated the temperature sensitivity of microbial consumption of marine particulate OM (POM) focused in the rapidly warming Gulf of Maine during the 2019 and 2020 fall phytoplankton bloom. The overall rate and quantity of microbial POM (C, N, and P pools) consumption at in situ versus elevated temperatures were quantified within bottle incubations over the course of two weeks. POM incubated at warmer temperatures (+5 to 6 °C) was generally consumed at a faster rate with an overall larger quantity consumed compared to cooler temperatures (12 to 14 °C). Significant interannual variability in consumption rates and temperature sensitivity (Q10 parameter) across elemental pools was found and linked to the initial POM C:N:P stoichiometry. More nitrogen-rich POM was preferentially consumed at in situ temperatures, whereas carbon-rich POM, likely containing a terrigenous component, was preferentially consumed at warmer experimental temperatures. The empirically estimated temperature sensitivity (Q10) ranged from 2.7 to 3.4 in 2019 versus 1.0–1.2 in 2020, variable between and amongst POM elemental pools, suggesting both temperature and organic matter substrate stoichiometry (composition) play an important role in dictating the microbial POM remineralization response to warming ocean temperatures.
海洋微生物对海洋生态系统至关重要,并通过其在地球生物地球化学循环中的重要作用影响全球气候。鉴于海洋在生态系统中的复杂作用,了解海洋温度升高对有机物循环的影响是很重要的,据推测,有机物循环通过加速微生物对有机物对二氧化碳的呼吸作用,对未来的变暖做出了积极的反馈。我们通过实验研究了在2019年和2020年秋季浮游植物繁殖期间,微生物对缅因湾快速变暖的海洋颗粒OM (POM)消耗的温度敏感性。在两周的瓶孵育过程中,对原位和高温下微生物POM (C、N和P池)消耗的总体速率和数量进行了量化。与较冷的温度(12至14°C)相比,在较热的温度(+5至6°C)下孵育的POM通常以更快的速度消耗,总体消耗量更大。发现元素池的消耗率和温度敏感性(Q10参数)具有显著的年际变化,并与初始POM C:N:P化学计量有关。更多的富氮POM在原位温度下优先被消耗,而富含碳的POM(可能含有陆源成分)在较高的实验温度下优先被消耗。经验估计的温度敏感性(Q10)在2019年为2.7 - 3.4,而在2020年为1.0-1.2,POM元素池之间和之间的变化表明温度和有机物底物化学计量(组成)在决定微生物POM对海洋温度变暖的再矿化反应中起重要作用。
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引用次数: 0
Nickel and its isotope in response to differential manganese minerals accumulation in Northwest Pacific sediments 西北太平洋沉积物中镍及其同位素对锰矿物差异富集的响应
IF 2.5 3区 地球科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-08-31 DOI: 10.1016/j.marchem.2025.104554
Hengchao Xu , Xiaotong Peng , Shui-Jiong Wang , Shuangquan Liu , Jiwei Li , Hao Yang
Nickel (Ni) is a biologically essential element in marine systems, yet its oceanic sources and sinks remain incompletely quantified. Micro manganese nodules (MMNs) and particles (MMPs) in marine sediment are major authigenic phase that scavenge critical metals though adsorption or incorporation. The accumulation of these minerals depends strongly on the seawater conditions and diagenetic processes within the sediments. Despite their significance, the influence of different manganese phase on the cycling of polymetallic elements-particularly Ni and its isotopes-has received little attention. This study analyzed MMPs bearing sediments, MMNs, and MMN bearing sediments from the Northwest Pacific Ocean to characterize their geochemical and Ni isotopic signatures. In core JL190, MMNs display Mn/Fe ratio and trace element patterns typical of suboxic-oxic diagenesis. Across all three cores, Ni concentrations track Mn accumulation closely, as shown by strong Mn/Al–Ni/Al correlations. However, core TS01-B10 from the Mariana Trench, which contains diatom-rich clay, yields weaker correlations than the two Philippine Sea cores. Despite these differences, bulk sediment δ60Ni values remain light (0.01–0.79 ‰, median 0.27 ‰), consistent with most pelagic sediments. In core B10, declining δ60Ni alongside rising Mn/Al ratios imply preferential adsorption of lighter Ni isotopes. In contrast, JL189 show simultaneous increase in Mn/Al and δ60Ni, suggesting porewater exchange and isotope fractionation on existing Mn oxides. The heavier Ni isotopic signature in diagenetic MMNs relative to bulk sediments likely reflects prolonged porewater interaction, preserving the porwater's isotopic signature. These results provide the first δ60Ni data for MMNs and elucidate their role as Ni carriers. These findings highlight the importance of authigenic Mn oxides in influencing the benthic flux of heavier Ni isotopes, which contributes to balancing the oceanic Ni budget.
镍(Ni)是海洋系统中的一种生物必需元素,但其海洋来源和汇仍未完全量化。微锰结核(MMNs)和微锰颗粒(MMPs)是海洋沉积物中主要的自生相,通过吸附或结合清除关键金属。这些矿物的富集在很大程度上取决于海水条件和沉积物内的成岩作用。不同锰相对多金属元素(特别是镍及其同位素)循环的影响虽具有重要意义,但却很少受到关注。本研究分析了西北太平洋含MMPs、MMNs和MMN沉积物的地球化学特征和Ni同位素特征。在JL190岩心中,MMNs显示出典型的亚氧成岩的Mn/Fe比值和微量元素模式。在所有三个岩心中,Ni浓度与Mn积累密切相关,如强Mn/Al - Ni/Al相关性所示。然而,马里亚纳海沟的TS01-B10岩芯含有富含硅藻的粘土,其相关性比菲律宾海的两个岩芯弱。总体沉积δ60Ni值较轻(0.01 ~ 0.79‰,中位数0.27‰),与大部分远洋沉积相一致。在B10岩心中,δ60Ni随Mn/Al比值的上升而下降,表明较轻的Ni同位素优先吸附。JL189中Mn/Al和δ60Ni同时增加,表明存在孔隙水交换和同位素分馏作用。相对于大块沉积物,成岩MMNs中较重的Ni同位素特征可能反映了长时间的孔隙水相互作用,从而保留了孔隙水的同位素特征。这些结果提供了MMNs的第一个δ60Ni数据,并阐明了它们作为Ni载体的作用。这些发现强调了自生Mn氧化物在影响重Ni同位素的底栖通量方面的重要性,这有助于平衡海洋Ni收支。
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引用次数: 0
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Marine Chemistry
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