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Retraction of: Automated Tools to Advance High-Resolution Imaging in Liquid. 撤回:自动化工具,以推进高分辨率成像的液体。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-22 DOI: 10.1093/mam/ozae128
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引用次数: 0
Retraction of: Structural Insights of the SARS-CoV-2 Nucleocapsid Protein: Implications for the Inner-workings of Rapid Antigen Tests. 撤回:SARS-CoV-2核衣壳蛋白的结构见解:对快速抗原检测内部工作的影响。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-22 DOI: 10.1093/mam/ozae127
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引用次数: 0
Estimation of Dislocation Densities With Nondestructive Scanning Electron Microscope Techniques: Application to Gallium Nitride. 利用无损扫描电子显微镜技术估算位错密度:氮化镓的应用
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae124
Arka Mandal, Benoît Beausir, Julien Guyon, Vincent Taupin, Antoine Guitton

Characterizing threading dislocations (TDs) in gallium nitride (GaN) semiconductors is crucial for ensuring the reliability of semiconductor devices. The current research addresses this issue by combining two techniques using a scanning electron microscope, namely electron channeling contrast imaging (ECCI) and high-resolution electron backscattered diffraction (HR-EBSD). It is a comparative study of these techniques to underscore how they perform in the evaluation of TD densities in GaN epitaxial layers. Experiments reveal that the dislocation line vectors mostly deviate from the growth direction of the film, i.e., ∦ [0001], followed by edge-type dislocations (dislocation lines || [0001]) with insignificant screw character. Furthermore, TDs from the dislocation clusters are characterized as edge- and (edge + mixed)-type TDs. By combining ECCI counting of dislocations and HR-EBSD description of geometrically necessary dislocation density type, it is possible to measure the total TD density and provide the proportion of pure (edge and screw) and mixed TDs. It has also been observed from the analyses of residual elastic strain fields and lattice rotations that it is not possible to identify individual dislocations for the spatial resolution of 50 nm in HR-EBSD. Nevertheless, ECCI and HR-EBSD can be complementarily used to count and characterize the TDs.

氮化镓(GaN)半导体中螺纹位错(TDs)的表征对于确保半导体器件的可靠性至关重要。目前的研究通过结合扫描电子显微镜的两种技术,即电子通道对比成像(ECCI)和高分辨率电子背散射衍射(HR-EBSD)来解决这一问题。这是对这些技术的比较研究,以强调它们如何在GaN外延层的TD密度评估中发挥作用。实验发现,位错线向量大多偏离薄膜的生长方向,即∦[0001],其次是边缘型位错(位错线||[0001]),螺杆特征不明显。此外,位错团簇的TDs表现为边缘型和(边缘+混合)型TDs。结合位错的ECCI计数和几何必要位错密度类型的HR-EBSD描述,可以测量总TD密度,并提供纯TD(边缘和螺旋)和混合TD的比例。从残余弹性应变场和晶格旋转的分析中也观察到,在HR-EBSD中,在50 nm的空间分辨率下,不可能识别单个位错。然而,ECCI和HR-EBSD可以互补用于TDs的计数和表征。
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引用次数: 0
Retrieval of Phase Information from Low-Dose Electron Microscopy Experiments: Are We at the Limit Yet? 从低剂量电子显微镜实验中获取相位信息:我们已经到了极限了吗?
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae125
Francisco Vega Ibáñez, Jo Verbeeck

The challenge of imaging low-density objects in an electron microscope without causing beam damage is significant in modern transmission electron microscopy. This is especially true for life science imaging, where the sample, rather than the instrument, still determines the resolution limit. Here, we explore whether we have to accept this or can progress further in this area. To do this, we use numerical simulations to see how much information we can obtain from a weak phase object at different electron doses. Starting from a model with four phase values, we compare Zernike phase contrast with measuring diffracted intensity under multiple random phase illuminations to solve the inverse problem. Our simulations have shown that diffraction-based methods perform better than the Zernike method, as we have found and addressed a normalization issue that, in some other studies, led to an overly optimistic representation of the Zernike setup. We further validated this using more realistic 2D objects and found that random phase illuminated diffraction can be up to five times more efficient than an ideal Zernike implementation. These findings suggest that diffraction-based methods could be a promising approach for imaging beam-sensitive materials and that current low-dose imaging methods are not yet at the quantum limit.

在现代透射电子显微镜中,在不造成光束损伤的情况下在电子显微镜中成像低密度物体是一个重大的挑战。对于生命科学成像来说尤其如此,在这个领域,决定分辨率极限的仍然是样本,而不是仪器。在这里,我们探讨我们是否必须接受这一点,或者我们是否可以在这一领域取得进一步进展。为了做到这一点,我们使用数值模拟来看看我们可以从不同电子剂量的弱相物体中获得多少信息。从具有四个相位值的模型出发,我们将Zernike相位对比与在多个随机相位照明下测量衍射强度进行比较,以解决反问题。我们的模拟表明,基于衍射的方法比Zernike方法表现得更好,因为我们已经发现并解决了一个标准化问题,在其他一些研究中,这个问题导致了Zernike设置的过于乐观的表示。我们使用更真实的二维物体进一步验证了这一点,发现随机相位照明衍射的效率比理想的Zernike实现高出五倍。这些发现表明,基于衍射的方法可能是一种很有前途的方法,用于成像光束敏感材料,目前的低剂量成像方法尚未达到量子极限。
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引用次数: 0
Morphological and Anatomical Deformities of Hirudo verbana, Carena 1820 (Annelida, Hirudinea) After Feeding: Light and Electron Microscopic Analysis. 水蛭1820(环节动物,水蛭目)摄食后的形态和解剖畸形:光镜和电镜分析。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae136
Özmen Ülger, Huseyin Ayhan

Leeches are widely used as model organisms in scientific studies and medical treatments. Medical leeches are hematophagous parasites that usually feed on the blood of their hosts. Some leeches show deformities, usually after feeding. This causes both medical and economic losses as it reduces the effectiveness of leeches in cultivation and medical treatment. The aim of this study was to investigate the effects of morphological deformations after feeding in Hirudo verbana, Carena 1820 (Annelida, Hirudinea), an important species in medical leech treatments. For this purpose, both histopathological and scanning electron microscopy examinations of starved and fed leeches were performed. The causes of deformities in medical leeches were found to be due to overfeeding, which caused cracks on the intestinal surface and therefore deterioration of the tissues. It is also thought that the immunological agents in the fed blood destroyed the medical leech tissue in these regions. In addition, it was determined that the cellular structure of the shaped blood elements stored in the cavity after feeding was preserved for a long time (months) without deterioration. It is certain that revealing the mechanism by which this occurs will inspire the preservation of blood for a long time in blood transfusion.

水蛭被广泛用作科学研究和医学治疗的模式生物。医用水蛭是食血寄生虫,通常以宿主的血液为食。有些水蛭通常在喂食后会出现畸形。这会造成医疗和经济损失,因为它降低了水蛭在种植和医疗中的有效性。本研究旨在探讨水蛭医学治疗中重要的水蛭种——水蛭(Hirudo verbana, Carena 1820)摄食后形态变形的影响。为此,对饥饿和喂食的水蛭进行了组织病理学和扫描电镜检查。医学水蛭畸形的原因被发现是由于过度喂食,导致肠道表面出现裂缝,从而导致组织恶化。也有人认为,喂食血液中的免疫因子破坏了这些区域的医学水蛭组织。此外,我们还确定了喂养后储存在腔内的定型血元的细胞结构保存时间较长(月),没有变质。可以肯定的是,揭示这种情况发生的机制将有助于在输血中长期保存血液。
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引用次数: 0
TBX3 is Essential for Zygotic Genome Activation and Embryonic Development in Pigs. TBX3对猪受精卵基因组激活和胚胎发育至关重要。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae123
Xiao-Han Li, Song-Hee Lee, Ji-Dam Kim, Gyu-Hyun Lee, Jae-Min Sim, Xiang-Shun Cui

The pluripotency-related T-box family transcription factor TBX3 maintains mESC self-renewal and plays a key role in the development of several tissues, including the heart, mammary glands, limbs, and lungs. However, the role of TBX3 during porcine preimplantation embryo development remains unclear. In our research, TBX3 was knocked down by injecting dsRNA to explore the function of TBX3. TBX3 expression gradually increases during early embryonic development. TBX3 knockdown resulted in decreased in the rate of four-cell and blastocyst. Depletion of TBX3 decreased the level of H3K9Ac/H3K27Ac and decreased ZGA gene expression at the four-cell stage. Furthermore, TBX3 knockdown led to a decrease in ZSACN4 protein level, DNMT1 and intracellular 5mc levels were increased, and then induced telomeres shorten and DNA damaged. Additionally, TBX3 knockdown significantly decreased histone acetylation and pluripotency genes NANOG/OCT4 expression in blastocysts. TBX3 knockdown induced apoptosis in blastocysts. Taken together, TBX3 regulate histone acetylation and play important roles in zygotic genome activation and early embryonic development in pigs.

多能性相关的T-box家族转录因子TBX3维持mESC自我更新,并在包括心脏、乳腺、四肢和肺在内的几种组织的发育中发挥关键作用。然而,TBX3在猪着床前胚胎发育中的作用尚不清楚。在我们的研究中,我们通过注射dsRNA敲低TBX3来探索TBX3的功能。TBX3的表达在胚胎发育早期逐渐增加。TBX3基因敲低导致四细胞和囊胚率下降。TBX3的缺失降低了H3K9Ac/H3K27Ac水平,降低了ZGA基因在四细胞期的表达。TBX3基因敲低导致ZSACN4蛋白水平降低,DNMT1和胞内5mc水平升高,导致端粒缩短和DNA损伤。此外,TBX3基因敲除显著降低了胚泡中组蛋白乙酰化和多能基因NANOG/OCT4的表达。TBX3基因敲低诱导囊胚细胞凋亡。综上所述,TBX3调节组蛋白乙酰化,在猪受精卵基因组激活和早期胚胎发育中发挥重要作用。
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引用次数: 0
A Novel Self-Opening Transfer Shuttle for the Transfer of Air-Sensitive Sample to Scanning Electron Microscopy. 一种用于空气敏感样品转移到扫描电子显微镜的新型自开转移梭。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae120
Peng Wan, Xuri Wang, Qiang Zhang, Zhou Xu, Rui Cai, Yumeng Zhou

A self-opening transfer shuttle has been designed and fabricated for the transfer of air-sensitive samples to scanning electron microscopy (SEM). Delayed push out of an airtight sample cabin sealed inside the shuttle allows the protection of the sample from air exposure during the pumping of SEM chamber. A compressed spring is employed to automatically drive the push out of the cabin. Once the cabin is fully pushed out, the sample contained inside is revealed for SEM investigation through a hollow window created on the shuttle. The O-rings that are fixed at both ends of the sample cabin not only serve as sealing parts that make the cylinder airtight but also act as resistance elements that provide sufficient friction force to slow down the push out of the sample cabin. With the advantages of self-opening without the need for external control or force, and its reasonably small size, this low-cost and easy-to-use transfer shuttle has wide compatibility with different SEMs and holds a promising application prospect in numerous research areas.

设计并制造了一种自开传送梭,用于将气敏样品传送到扫描电子显微镜(SEM)。延迟推出密闭的样品舱内密封的航天飞机允许保护样品从空气暴露在扫描电镜室泵送期间。一个压缩的弹簧被用来自动推动推力走出舱室。一旦舱室被完全推出,舱内的样品就会通过航天飞机上的中空窗户露出来进行扫描电镜调查。固定在样品舱两端的o形圈不仅作为密封部件使气缸密封,而且作为阻力元件提供足够的摩擦力以减缓样品舱外的推力。该传递梭具有不需要外力控制或力就能自动开启的优点,且其体积较小,成本低,易于使用,与不同的sem具有广泛的兼容性,在众多研究领域具有广阔的应用前景。
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引用次数: 0
Heat Transfer Analysis of Cryogenic EXLO Specimen Handling. 低温EXLO样品处理的传热分析。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae121
Kyle W Beggs, Thomas E Dougherty, Alain J Kassab, Lucille A Giannuzzi

A conduction heat transfer analysis of ex situ lift-out specimen handling under cryogenic conditions (cryo-EXLO) is performed and compared with experimentally determined temperature values using a type K thermocouple. Using a finite-volume solver for heat conduction, the analysis confirms that manipulation of a specimen by a probe above a working surface cooled at liquid nitrogen (LN2) temperatures can remain below the critical vitreous temperature up to several hundreds of micrometers above the working surface, allowing for ample distance for lift out and specimen manipulation. In addition, the temperature above the cryogenic shuttle sample holder working surface remains below the vitreous temperature for several tens of minutes without adding cryogen, yielding sufficient time to complete multiple manipulations. Periodically topping off the cryogen level may allow for unlimited cryo-EXLO manipulations with this hardware and geometry.

在低温条件下(cryo-EXLO)进行了非原位举出样品处理的传导传热分析,并与使用K型热电偶实验确定的温量值进行了比较。使用有限体积的热传导解算器,分析证实,在液氮(LN2)温度下冷却的工作表面上方的探针操作样品可以保持在工作表面上方数百微米的临界玻璃温度以下,从而为取出和操作样品提供足够的距离。此外,在不添加冷冻剂的情况下,低温穿梭样架工作面上方的温度保持在玻璃体温度以下数十分钟,有足够的时间完成多次操作。定期加满冷冻水平可以允许无限的冷冻- exlo操作与此硬件和几何形状。
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引用次数: 0
Direct Evidence of Anomalous Peierls Transition-Induced Charge Density Wave Order at Room Temperature in Metallic NaRu2O4. 金属NaRu2O4在室温下异常peerls跃迁诱导电荷密度波序的直接证据。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae129
Anna Scheid, Isha, Arvind Kumar Yogi, Masahiko Isobe, Birgit Bußmann, Tobias Heil, Peter A van Aken

In the field of quantum materials, understanding anomalous behavior under charge degrees of freedom through bond formation is of fundamental importance, with two key concepts: Dimerization and charge order at different cation sites. The coexistence of both dimerization and charge ordering is unusually found in NaRu2O4, even in its metallic state at room temperature. Our work unveils the origin of the interplay of these effects within metallic single-crystalline NaRu2O4. Employing advanced transmission electron microscopy techniques, we probe the lattice order of NaRu2O4 as a function of temperature and provide direct microscopic evidence of a Peierls-type transition. This transition is accompanied by a pronounced dimerization of the ruthenium chains, resulting in a distinctive twofold superstructure along the b axis below the critical transition temperature of ∼535 K, coinciding with a charge order. In situ heating experiments confirm the reversibility of this first-order phase transition, and periodic lattice displacement maps depict atomic-scale displacements linked to dimerization.

在量子材料领域,通过键的形成来理解电荷自由度下的异常行为是至关重要的,其中有两个关键概念:二聚化和不同阳离子位置的电荷顺序。在常温下的金属态NaRu2O4中,二聚化现象和电荷有序现象同时存在。我们的工作揭示了金属单晶NaRu2O4中这些效应相互作用的起源。利用先进的透射电子显微镜技术,我们探测了NaRu2O4的晶格顺序随温度的变化,并提供了peerls型转变的直接显微证据。这种转变伴随着明显的钌链二聚化,导致在临界转变温度~ 535 K以下沿b轴形成独特的双重上层结构,与电荷顺序一致。原位加热实验证实了这种一阶相变的可逆性,周期性晶格位移图描述了与二聚化有关的原子尺度位移。
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引用次数: 0
Preparation of Small Extracellular Vesicles Using Sequential Ultrafiltration with Regenerated Cellulose Membranes of Different Molecular Weight Cutoffs: A Study of Morphology and Size by Electron Microscopy. 用不同分子量截留物的再生纤维素膜序贯超滤制备细胞外小泡:形貌和大小的电镜研究。
IF 2.9 4区 工程技术 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2025-01-13 DOI: 10.1093/mam/ozae133
Noriyuki Ishii, Hiroaki Tateno

There is still room for improvement in the isolation and purification techniques for extracellular vesicles (EVs), particularly in the separation of exosomes (small EVs) from other membrane vesicles such as microvesicles and apoptotic bodies. Furthermore, it is crucial to establish preparation methods that preserve the intrinsic properties of EVs in this context. In this study, we focus on the isolation and preparation of small EVs, exosomes, from the culture supernatant of a human cell line. We discuss the sequential use of regenerated cellulose membranes with different molecular weight cutoffs, based on direct evaluation by transmission electron microscopy, and examine the challenges of characterizing biological membrane vesicles, small EVs, identified during this process.

细胞外囊泡(EVs)的分离和纯化技术,特别是外泌体(小EVs)与其他膜囊泡(如微囊泡和凋亡小体)的分离仍有改进的空间。此外,在这种情况下,建立保持电动汽车固有特性的制备方法至关重要。在本研究中,我们着重于从人细胞系培养上清中分离和制备小ev,外泌体。基于透射电子显微镜的直接评价,我们讨论了具有不同分子量截止点的再生纤维素膜的顺序使用,并研究了在此过程中鉴定的生物膜囊泡(小ev)的挑战。
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引用次数: 0
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Microscopy and Microanalysis
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