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Dynamics of the Trypanosoma cruzi infection in adipose tissue: Assessing gene expression of PNPLA2, FASN, and ACAT1 under Benzonidazole treatment and indirect mononuclear immune cells interaction 脂肪组织中克氏锥虫感染的动态变化:苯并咪唑处理和间接单核免疫细胞相互作用下 PNPLA2、FASN 和 ACAT1 的基因表达评估
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-04-06 DOI: 10.1016/j.molbiopara.2024.111618
Ana Carla da Silva , Leyllane Rafael Moreira , Cíntia Nascimento da Costa Oliveira , Claudeir Dias da Silva Júnior , Kleyton Palmeira do Ó , Kamila Kássia Dos Santos Oliveira , Maria Gabriella Nunes De Melo , Ana Karine de Araújo Soares , Milena de Paiva Cavalcanti , Luydson Richardson Silva Vasconcelos , Virginia Maria Barros de Lorena

Trypanosoma cruzi is a parasite with a high capacity to adapt to the host. Animal models have already demonstrated that the tropism of this parasite occurs not only in cardiac/digestive tissues but also in adipose tissue (AT). That said, the consequences of T. cruzi infection for AT and the implications of treatment with Benzonidazole in this tissue are under discussion. Here, we tested the hypothesis that T. cruzi infection in adipose tissue upon treatment with Benzonidazole (Bz) and the interaction of mononuclear immune cells (PBMC) influences the relative expression of ACAT1, FASN, and PNPLA2 genes. Thus, stem cells derived from adipose tissue (ADSC) after adipogenic differentiation were indirectly cultivated with PBMC after infection with the T. cruzi Y strain and treatment with Bz. We use the TcSAT-IAM system and RT-qPCR to evaluate the parasite load and the relative quantification (ΔCt) of the ACAT1, FASN, and PNPLA2 genes. Our results demonstrate that treatment with Bz did not reduce adipocyte infection in the presence (p-value: 0.5796) or absence (p-value: 0.1854) of cultivation with PBMC. In addition, even though there is no statistical difference when compared to the control group (AT), T. cruzi induces the FASN expression (Rq: 14.00). However, treatment with Bz in AT suggests the increases of PNPLA2 expression levels (Rq: 12.58), even in the absence of T. cruzi infection. During indirect cultivation with PBMC, T. cruzi smooths the expression of PNPLA2 (Rq: 0.824) and instigates the expression of ACAT1 (Rq: 1.632) and FASN (Rq: 1.394). Furthermore, the treatment with Bz during infection induces PNPLA2 expression (Rq: 1.871), maintaining FASN expression levels (Rq: 1.334). Given this, our results indicate that treatment with Benzonidazole did not decrease T. cruzi infection in adipose tissue. However, treating the adipocyte cells with Bz during the interaction with PBMC cells influences the lipid pathways scenario, inducing lipolytic metabolism through the expression of PNPLA2.

克鲁兹锥虫是一种对宿主适应能力很强的寄生虫。动物模型已经证明,这种寄生虫不仅寄生于心脏/消化道组织,还寄生于脂肪组织(AT)。尽管如此,目前仍在讨论T. cruzi感染对脂肪组织的影响以及用苯并咪唑治疗对该组织的影响。在这里,我们测试了这样一个假设:脂肪组织中的T. cruzi感染经苯并咪唑(Bz)处理后,与单核免疫细胞(PBMC)的相互作用会影响ACAT1、FASN和PNPLA2基因的相对表达。因此,在感染 T. cruzi Y 株并经 Bz 处理后,用 PBMC 间接培养脂肪组织分化后的干细胞(ADSC)。我们使用 TcSAT-IAM 系统和 RT-qPCR 评估寄生虫载量以及 ACAT1、FASN 和 PNPLA2 基因的相对定量 (ΔCt)。我们的结果表明,在有 PBMC 培养(p 值:0.5796)或没有 PBMC 培养(p 值:0.1854)的情况下,用 Bz 处理并不会减少脂肪细胞感染。此外,尽管与对照组(AT)相比没有统计学差异,但 T. cruzi 会诱导 FASN 的表达(Rq:14.00)。然而,在 AT 组中使用 Bz 会增加 PNPLA2 的表达水平(Rq:12.58),即使在没有感染 T. cruzi 的情况下也是如此。在用 PBMC 间接培养过程中,T. cruzi 会平滑 PNPLA2 的表达(Rq:0.824),并促进 ACAT1(Rq:1.632)和 FASN(Rq:1.394)的表达。此外,在感染期间用 Bz 处理可诱导 PNPLA2 的表达(Rq:1.871),维持 FASN 的表达水平(Rq:1.334)。有鉴于此,我们的研究结果表明,使用苯并咪唑治疗并不能减少脂肪组织中的克鲁兹绦虫感染。然而,在脂肪细胞与 PBMC 细胞相互作用期间,用 Bz 处理脂肪细胞会影响脂质途径,通过 PNPLA2 的表达诱导脂肪分解代谢。
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引用次数: 0
Formation of functional E3 ligase complexes with UBC2 and UEV1 of Leishmania mexicana 与墨西哥利什曼病的 UBC2 和 UEV1 形成功能性 E3 连接酶复合物。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-03-29 DOI: 10.1016/j.molbiopara.2024.111619
Rebecca J. Burge , Katie H. Jameson , Vincent Geoghegan , Adam A. Dowle , Jeremy C. Mottram , Anthony J. Wilkinson

In eukaryotic cells, molecular fate and cellular responses are shaped by multicomponent enzyme systems which reversibly attach ubiquitin and ubiquitin-like modifiers to target proteins. The extent of the ubiquitin proteasome system in Leishmania mexicana and its importance for parasite survival has recently been established through deletion mutagenesis and life-cycle phenotyping studies. The ubiquitin conjugating E2 enzyme UBC2, and the E2 enzyme variant UEV1, with which it forms a stable complex in vitro, were shown to be essential for the differentiation of promastigote parasites to the infectious amastigote form. To investigate further, we used immunoprecipitation of Myc-UBC2 or Myc-UEV1 to identify interacting proteins in L. mexicana promastigotes. The interactome of UBC2 comprises multiple ubiquitin-proteasome components including UEV1 and four RING E3 ligases, as well as potential substrates predicted to have roles in carbohydrate metabolism and intracellular trafficking. The smaller UEV1 interactome comprises six proteins, including UBC2 and shared components of the UBC2 interactome consistent with the presence of intracellular UBC2-UEV1 complexes. Recombinant RING1, RING2 and RING4 E3 ligases were shown to support ubiquitin transfer reactions involving the E1, UBA1a, and UBC2 to available substrate proteins or to unanchored ubiquitin chains. These studies define additional components of a UBC2-dependent ubiquitination pathway shown previously to be essential for promastigote to amastigote differentiation.

在真核细胞中,分子命运和细胞反应是由多组分酶系统决定的,该系统将泛素和泛素样修饰物可逆地连接到目标蛋白质上。通过缺失诱变和生命周期表型研究,最近确定了墨西哥利什曼原虫中泛素蛋白酶体系统的范围及其对寄生虫生存的重要性。研究表明,泛素结合 E2 酶 UBC2 以及与之在体外形成稳定复合物的 E2 酶变体 UEV1 是原原体寄生虫分化为传染性非原体寄生虫所必需的。为了进一步研究,我们使用免疫沉淀 Myc-UBC2 或 Myc-UEV1 来鉴定 L. mexicana 原原体中的相互作用蛋白。UBC2 的相互作用组包括多种泛素-蛋白酶体成分,包括 UEV1 和四种 RING E3 连接酶,以及预测在碳水化合物代谢和细胞内运输中发挥作用的潜在底物。较小的 UEV1 相互作用组包括六个蛋白质,其中包括 UBC2 和 UBC2 相互作用组的共享成分,这与细胞内 UBC2-UEV1 复合物的存在是一致的。研究表明,重组的 RING1、RING2 和 RING4 E3 连接酶支持涉及 E1、UBA1a 和 UBC2 到可用底物蛋白或未锚定泛素链的泛素转移反应。这些研究确定了 UBC2 依赖性泛素化途径的其他组成部分,该途径以前曾被证明是原原体向非原体分化所必需的。
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引用次数: 0
Plasmodium falciparum proteases as new drug targets with special focus on metalloproteases 恶性疟原虫蛋白酶作为新的药物靶点,特别关注金属蛋白酶。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-03-29 DOI: 10.1016/j.molbiopara.2024.111617
Prabhash Jyoti Mahanta, Kimjolly Lhouvum

Malaria poses a significant global health threat particularly due to the prevalence of Plasmodium falciparum infection. With the emergence of parasite resistance to existing drugs including the recently discovered artemisinin, ongoing research seeks novel therapeutic avenues within the malaria parasite. Proteases are promising drug targets due to their essential roles in parasite biology, including hemoglobin digestion, merozoite invasion, and egress. While exploring the genomic landscape of Plasmodium falciparum, it has been revealed that there are 92 predicted proteases, with only approximately 14 of them having been characterized. These proteases are further distributed among 26 families grouped into five clans: aspartic proteases, cysteine proteases, metalloproteases, serine proteases, and threonine proteases. Focus on metalloprotease class shows further role in organelle processing for mitochondria and apicoplasts suggesting the potential of metalloproteases as viable drug targets. Holistic understanding of the parasite intricate life cycle and identification of potential drug targets are essential for developing effective therapeutic strategies against malaria and mitigating its devastating global impact.

疟疾对全球健康构成重大威胁,特别是由于恶性疟原虫感染的流行。随着寄生虫对现有药物(包括最近发现的青蒿素)产生抗药性,目前的研究正在疟疾寄生虫体内寻找新的治疗途径。蛋白酶在寄生虫生物学(包括血红蛋白消化、裂殖体侵入和排出)中发挥着重要作用,因此是很有希望的药物靶点。在探索恶性疟原虫的基因组图谱时,发现有 92 种预测的蛋白酶,其中只有约 14 种已被鉴定。这些蛋白酶进一步分布在 26 个家族中,分为天冬氨酸蛋白酶、半胱氨酸蛋白酶、金属蛋白酶、丝氨酸蛋白酶和苏氨酸蛋白酶五大类。对金属蛋白酶类的关注进一步显示了金属蛋白酶在线粒体和细胞质处理过程中的作用,这表明金属蛋白酶有可能成为可行的药物靶点。全面了解寄生虫错综复杂的生命周期并确定潜在的药物靶点,对于制定有效的疟疾治疗策略和减轻其对全球的破坏性影响至关重要。
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引用次数: 0
Mapping the transporter-substrate interactions of the Trypanosoma cruzi NB1 nucleobase transporter reveals the basis for its high affinity and selectivity for hypoxanthine and guanine and lack of nucleoside uptake 绘制克氏锥虫 NB1 核苷酸转运体的转运体-底物相互作用图,揭示其对次黄嘌呤和鸟嘌呤具有高亲和力和选择性以及缺乏核苷吸收的基础
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-02-23 DOI: 10.1016/j.molbiopara.2024.111616
Mustafa M. Aldfer , Fabian Hulpia , Serge van Calenbergh , Harry P. De Koning

Trypanosoma cruzi is a protozoan parasite and the etiological agent of Chagas disease, a debilitating and sometimes fatal disease that continues to spread to new areas. Yet, Chagas disease is still only treated with two related nitro compounds that are insufficiently effective and cause severe side effects. Nucleotide metabolism is one of the known vulnerabilities of T. cruzi, as they are auxotrophic for purines, and nucleoside analogues have been shown to have genuine promise against this parasite in vitro and in vivo. Since purine antimetabolites require efficient uptake through transporters, we here report a detailed characterisation of the T. cruzi NB1 nucleobase transporter with the aim of elucidating the interactions between TcrNB1 and its substrates and finding the positions that can be altered in the design of novel antimetabolites without losing transportability. Systematically determining the inhibition constants (Ki) of purine analogues for TcrNB1 yielded their Gibbs free energy of interaction, ΔG0. Pairwise comparisons of substrate (hypoxanthine, guanine, adenine) and analogues allowed us to determine that optimal binding affinity by TcrNB1 requires interactions with all four nitrogen residues of the purine ring, with N1 and N9, in protonation state, functioning as presumed hydrogen bond donors and unprotonated N3 and N7 as hydrogen bond acceptors. This is the same interaction pattern as we previously described for the main nucleobase transporters of Trypanosoma brucei spp. and Leishmania major and makes it the first of the ENT-family genes that is functionally as well as genetically conserved between the three main kinetoplast pathogens.

南美锥虫病是一种原生动物寄生虫,也是南美锥虫病的病原体。然而,恰加斯病仍然只能用两种相关的硝基化合物来治疗,效果不够理想,而且会产生严重的副作用。核苷酸代谢是南美锥虫已知的弱点之一,因为它们对嘌呤有辅助作用,核苷类似物在体外和体内对这种寄生虫有真正的疗效。由于嘌呤类抗代谢物需要通过转运体进行有效吸收,我们在此报告了克鲁斯绦虫 NB1 核碱基转运体的详细特征,目的是阐明 TcrNB1 与其底物之间的相互作用,并找到在设计新型抗代谢物时可以改变的位置,而不会失去转运性。通过系统测定嘌呤类似物对 TcrNB1 的抑制常数 (Ki),得出了它们相互作用的吉布斯自由能 ΔG0。通过对底物(次黄嘌呤、鸟嘌呤、腺嘌呤)和类似物进行配对比较,我们确定 TcrNB1 的最佳结合亲和力需要与嘌呤环的所有四个氮残基发生相互作用,质子化状态下的 N1 和 N9 是假定的氢键供体,而未质子化的 N3 和 N7 则是氢键受体。这与我们之前描述的布氏锥虫和大利什曼病菌的主要核碱基转运体的相互作用模式相同,并使其成为 ENT 家族基因中第一个在功能上和基因上在三种主要动植体病原体之间保持一致的基因。
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引用次数: 0
Mechanisms of adaptation and evolution in Toxoplasma gondii 弓形虫的适应和进化机制。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2024-02-13 DOI: 10.1016/j.molbiopara.2024.111615
Sergio O. Angel, Laura Vanagas, Andres M. Alonso

Toxoplasma has high host flexibility, infecting all nucleated cells of mammals and birds. This implies that during its infective process the parasite must constantly adapt to different environmental situations, which in turn leads to modifications in its metabolism, regulation of gene transcription, translation of mRNAs and stage specific factors. There are conserved pathways that support these adaptations, which we aim to elucidate in this review. We begin by exploring the widespread epigenetic mechanisms and transcription regulators, continue with the supportive role of Heat Shock Proteins (Hsp), the translation regulation, stress granules, and finish with the emergence of contingency genes in highly variable genomic domains, such as subtelomeres. Within epigenetics, the discovery of a new histone variant of the H2B family (H2B.Z), contributing to T. gondii virulence and differentiation, but also gene expression regulation and its association with the metabolic state of the parasite, is highlighted. Associated with the regulation of gene expression are transcription factors (TFs). An overview of the main findings on TF and development is presented. We also emphasize the role of Hsp90 and Tgj1 in T. gondii metabolic fitness and the regulation of protein translation. Translation regulation is also highlighted as a mechanism for adaptation to conditions encountered by the parasite as well as stress granules containing mRNA and proteins generated in the extracellular tachyzoite. Another important aspect in evolution and adaptability are the subtelomeres because of their high variability and gene duplication rate. Toxoplasma possess multigene families of membrane proteins and contingency genes that are associated with different metabolic stresses. Among them parasite differentiation and environmental stresses stand out, including those that lead tachyzoite to bradyzoite conversion. Finally, we are interested in positioning protozoa as valuable evolution models, focusing on research related to the Extended Evolutionary Synthesis, based on models recently generated, such as extracellular adaptation and ex vivo cyst recrudescence.

弓形虫具有高度的宿主灵活性,可感染哺乳动物和鸟类的所有有核细胞。这意味着在感染过程中,寄生虫必须不断适应不同的环境状况,这反过来又会导致其新陈代谢、基因转录调控、mRNAs 翻译和特定阶段因子的改变。支持这些适应的途径是一致的,我们希望在本综述中阐明这些途径。我们首先探讨了广泛存在的表观遗传机制和转录调节因子,接着探讨了热休克蛋白(Hsp)的支持作用、翻译调节、应激颗粒,最后探讨了在高度可变的基因组域(如亚细胞膜)中出现的应急基因。在表观遗传学方面,重点介绍了 H2B 家族新组蛋白变体(H2B.Z)的发现,它不仅有助于淋球菌的毒力和分化,还有助于基因表达调控及其与寄生虫代谢状态的关联。与基因表达调控相关的是转录因子(TFs)。本文概述了有关转录因子和发育的主要发现。我们还强调了 Hsp90 和 Tgj1 在刚地虫新陈代谢和蛋白质翻译调控中的作用。我们还强调了翻译调控作为寄生虫适应环境的一种机制,以及细胞外速虫产生的含有 mRNA 和蛋白质的应激颗粒。进化和适应性的另一个重要方面是亚基因组,因为它们具有很高的变异性和基因复制率。弓形虫拥有与不同代谢压力相关的膜蛋白和应急基因的多基因家族。其中最突出的是寄生虫分化和环境压力,包括那些导致速虫向长尾虫转化的压力。最后,我们有兴趣将原生动物定位为有价值的进化模型,重点关注与 "扩展进化综合 "有关的研究,这些研究以最近产生的模型为基础,如细胞外适应和体外囊肿再发育。
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引用次数: 0
A systematic review and meta-analysis on the current status of anthelmintic resistance in equine nematodes: A global perspective 马线虫抗虫现状的系统回顾和荟萃分析:全球视角。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2023-11-28 DOI: 10.1016/j.molbiopara.2023.111600
Enjia Cai , Rongzheng Wu , Yuhong Wu , Yu Gao , Yiping Zhu , Jing Li

Background

The intensive application of anthelmintics in equine has led to considerable resistance in cyathostomins and Parascaris equorum. It has been well documented that benzimidazole (BZ) and pyrantel resistance is widespread in cyathostomins and Parascaris equorum. Since no new classes of anthelmintic have been introduced in the last 40 years, it is critical to be aware of the current risk factors of anthelmintic application to avoid further resistance.

Objective

To review the factors affecting the level of anthelmintics resistance in equine around the world, type of anthelmintics, mode of application, dosage, nematode species, and location of anthelmintics application were evaluated and summarized.

Design/procedure

A systematic review and meta-analyses following the PRISMA Framework were conducted to identify, evaluate, and synthesize primary literature reporting the efficacy of anthelmintic drugs in equines. Information on the bibliographic data, anthelmintic drugs, animals, continents, parasite genera, type of anthelmintics, and dosage was collected. Nonparametric tests (Kruskal-Wallis and Mann-Whitney) were used in SPSS (v.27) to investigate the association between variables. Factors that have a significant impact on efficacy have been subjected to binary logistic regression. Six meta-analyses were conducted in Microsoft Excel (2021) to qualify current resistance issues of the three major anthelmintics classes.

Results

The final database was composed of 60 articles published between 1994 and 2022 with a total of 11835 animals. Anthelmintic class as well as anthelmintic active principle selection did have a significant effect on resistance (P < 0.01), whilst no correlation of the type of anthelmintics, mode of application, and dosage with efficacy were found. Anthelmintics resistance in ascarid was significantly more severe than in strongyle (P < 0.01). Macrocyclic lactone (ML) class and the benzimidazole and probenzimidazole (BP) class have the lowest efficacy against ascarid and strongyle, respectively (67.83% and 69.85%). The effect of location (by continent) also had a significant influence on the resistance of the ML class (P < 0.01). The resistance of the BP class which is the most prevalently applied was demonstrated in all six continents. Binary logistic regression revealed that parasite genera and drug class independently influenced the presence of drug resistance. The forest plots included in this study did not show a significant difference over time.

Conclusion

Current evidence indicated that anthelmintics resistance of ML and BP class were common in ascarid and strongyle. A combination of anthelmintics may reduce anthelmintics resistance, but multi-drug resistance may be a concern. Customerised a

背景:驱虫药在马体内的广泛应用已导致马棘球绦虫和马副绦虫产生相当大的抗药性。已有文献表明,对苯并咪唑和吡喃嘧啶的耐药性在cyathostomins和equorum Parascaris中广泛存在。由于在过去40年中没有引入新的驱虫药类别,因此了解目前使用驱虫药的危险因素以避免进一步的耐药性至关重要。目的:综述影响马抗虫药耐药性水平的因素,对马抗虫药的种类、使用方式、用量、线虫种类、使用地点等进行评价和总结。设计/程序:根据PRISMA框架进行系统回顾和荟萃分析,以识别、评估和综合报道驱虫药物对马的疗效的主要文献。收集文献资料、驱虫药、动物、大陆、寄生虫属、驱虫药种类、剂量等信息。在SPSS (v.27)中使用非参数检验(Kruskal-Wallis和Mann-Whitney)来调查变量之间的关联。对疗效有显著影响的因素进行了二元逻辑回归。在Microsoft Excel(2021)中进行了六项荟萃分析,以确定目前三种主要驱虫药类的耐药性问题。结果:最终数据库由1994 - 2022年间发表的60篇文章组成,共11835只动物。驱虫药的种类和活性成分的选择对耐药有显著影响(P < 0.01),而驱虫药的种类、使用方式和用量与药效无相关性。蛔虫的抗药性显著高于圆线虫(P < 0.01)。大环内酯(ML)类和苯并咪唑和丙苯咪唑(BP)类对蛔虫和蛔虫的药效最低,分别为67.83%和69.85%。地理位置(按洲)对ML类的抗性也有显著影响(P < 0.01)。在所有六大洲都证明了最普遍使用的BP类的抗性。二元logistic回归分析显示,寄生虫属和药物类别独立影响耐药的存在。本研究中包括的森林样地没有显示出随时间的显著差异。结论:目前有证据表明,ML和BP类抗药在蛔虫和圆线虫中普遍存在。联合使用驱虫药可能会减少对驱虫药的耐药性,但多药耐药性可能是一个问题。量身定制的驱虫策略可能有助于减少耐药性。
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引用次数: 0
Alterations in the metabolism of Pseudosuccinea columella (Mollusca: Gastropoda) caused by Heterorhabditis bacteriophora HP88 (Rhabditida: Heterorhabditidae) 由异habditis bacteriophora HP88 (rhabdida: heterorhabditida: Heterorhabditidae)引起的小柱伪琥珀藻(软体动物:腹足目)代谢的改变。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2023-11-23 DOI: 10.1016/j.molbiopara.2023.111599
Victor Menezes Tunholi , Natânia do Carmo Sperandio , Vinícius Menezes Tunholi-Alves , Lorena Souza Castro Altoé , Melissa Carvalho Machado do Couto-Chambarelli , Ludimila Santos Amaral , Caio Márcio de Oliveira Monteiro , Isabella Vilhena Freire Martins

The gastropod Pseudosuccinea columella participates in the dissemination of Fasciola hepatica in the environment, acting as the main intermediate host of this parasite in Brazil. The present study sought to elucidate the possible pathogenic effects of the entomopathogenic nematode (EPN) Heterorhabditis bacteriophora on P. columella, by evaluating the influence of infection on alanine aminotransferase (ALT) and aspartate aminotransferase (AST), as well as the concentrations of total protein, uric acid, and urea in the snail's hemolymph. For this, the snails were exposed to EPNs for 24 and 48 h, and for each exposure time, 20 snails were dissected after 7, 14 and 21 days for hemolymph collection. The primary findings suggest a significant proteolysis alongside elevated levels of uric acid and urea in P. columella infected individuals. These findings reveal that H. bacteriophora HP88 infection induced serious changes in the snail's metabolism, triggering important deleterious effects.

腹足动物Pseudosuccinea columella参与肝片形吸虫在环境中的传播,是巴西这种寄生虫的主要中间宿主。本研究旨在通过评估感染对蜗牛血淋巴中丙氨酸转氨酶(ALT)和天冬氨酸转氨酶(AST)的影响,以及总蛋白、尿酸和尿素浓度的影响,阐明昆虫病原性线虫(EPN)异habditis bacteriophora对小柱藻的可能致病作用。为此,将钉螺暴露于EPNs 24和48小时,并在每个暴露时间分别于7、14和21天后解剖20只钉螺进行血淋巴收集。初步研究结果表明,在小柱假单胞菌感染个体中,尿酸和尿素水平升高,同时存在显著的蛋白质水解。这些发现表明,血吸虫HP88感染引起了蜗牛代谢的严重变化,引发了重要的有害影响。
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引用次数: 0
Imaging of genomic loci in Trypanosoma brucei using an optimised LacO-LacI system 使用优化的LacO-LacI系统对布鲁氏锥虫基因组基因座进行成像。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2023-11-03 DOI: 10.1016/j.molbiopara.2023.111598
James Budzak , Ione Goodwin, Calvin Tiengwe, Gloria Rudenko

Visualisation of genomic loci by microscopy is essential for understanding nuclear organisation, particularly at the single cell level. One powerful technique for studying the positioning of genomic loci is through the Lac Operator-Lac Repressor (LacO-LacI) system, in which LacO repeats introduced into a specific genomic locus can be visualised through expression of a LacI-protein fused to a fluorescent tag. First utilised in Trypanosoma brucei over 20 years ago, we have now optimised this system with short, stabilised LacO repeats of less than 2 kb paired with a constitutively expressed mNeongreen::LacI fusion protein to facilitate visualisation of genomic loci. We demonstrate the compatibility of this system with super-resolution microscopy and propose its suitability for multiplexing with inducible RNAi or protein over expression which will allow analysis of nuclear organisation after perturbation of gene expression.

通过显微镜观察基因组基因座对于理解核组织至关重要,尤其是在单细胞水平上。研究基因组基因座定位的一种强大技术是通过Lac-Operator Lac-Repressor(LacO-LacI)系统,其中引入特定基因组基因座的LacO重复序列可以通过表达与荧光标签融合的LacI蛋白来可视化。20多年前,我们首次在布鲁氏锥虫中使用,现在我们已经用小于2kb的稳定的短LacO重复序列与组成型表达的mNeongreen::LacI融合蛋白对该系统进行了优化,以促进基因组基因座的可视化。我们证明了该系统与超分辨率显微镜的兼容性,并提出其适用于与诱导型RNAi或蛋白质过表达进行多路复用,这将允许分析基因表达扰动后的核组织。
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引用次数: 0
Elucidating the structure-function attributes of a trypanosomal arginyl-tRNA synthetase 阐明锥虫精氨酰tRNA合成酶的结构-功能属性。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2023-10-16 DOI: 10.1016/j.molbiopara.2023.111597
Pratyasha Bhowal , Bappaditya Roy , Sayak Ganguli , Gabor L. Igloi , Rajat Banerjee

Aminoacyl-tRNA synthetases (aaRSs) are fundamental components of the protein translation machinery. In light of their pivotal role in protein synthesis and structural divergence among species, they have always been considered potential targets for the development of antimicrobial compounds. Arginyl-tRNA synthetase from Trypanosoma cruzi (TcArgRS), the parasite responsible for causing Chagas Disease, contains a 100-amino acid insertion that was found to be completely absent in the human counterpart of similar length, as ascertained from multiple sequence alignment results. Thus, we were prompted to perform a preliminary characterization of TcArgRS using biophysical, biochemical, and bioinformatics tools. We expressed the protein in E. coli and validated its in-vitro enzymatic activity. Additionally, analysis of DTNB kinetics, Circular dichroism (CD) spectra, and ligand-binding studies using intrinsic tryptophan fluorescence measurements aided us to understand some structural features in the absence of available crystal structures. Our study indicates that TcArgRS can discriminate between L-arginine and its analogues. Among the many tested substrates, only L-canavanine and L-thioarginine, a synthetic arginine analogue exhibited notable activation. The binding of various substrates was also determined using in silico methods. This study may provide a viable foundation for studying small compounds that can be targeted against TcArgRS.

氨酰基tRNA合成酶(aaRS)是蛋白质翻译机制的基本组成部分。鉴于它们在蛋白质合成和物种间结构差异中的关键作用,它们一直被认为是开发抗菌化合物的潜在靶点。来自克鲁兹锥虫的精氨酰tRNA合成酶(TcArgRS)是导致恰加斯病的寄生虫,它含有一个100个氨基酸的插入,根据多序列比对结果确定,该插入在类似长度的人类对应物中完全不存在。因此,我们被要求使用生物物理、生物化学和生物信息学工具对TcArgRS进行初步表征。我们在大肠杆菌中表达了该蛋白,并验证了其体外酶活性。此外,使用固有色氨酸荧光测量对DTNB动力学、圆二色性(CD)光谱和配体结合研究的分析有助于我们了解在缺乏可用晶体结构的情况下的一些结构特征。我们的研究表明,TcArgRS可以区分L-精氨酸及其类似物。在许多测试的底物中,只有L-精氨酸和L-硫代精氨酸(一种合成精氨酸类似物)表现出显著的活化。还使用硅方法测定了各种基质的结合。这项研究可能为研究可靶向TcArgRS的小化合物提供可行的基础。
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引用次数: 0
RNA editing catalytic complexes edit multiple mRNA sites non-processively in Trypanosoma brucei 在布鲁氏锥虫中,RNA编辑催化复合物非加工性编辑多个mRNA位点。
IF 1.5 4区 医学 Q3 Immunology and Microbiology Pub Date : 2023-09-22 DOI: 10.1016/j.molbiopara.2023.111596
Jason Carnes , Suzanne M. McDermott , Kenneth Stuart

RNA editing generates mature mitochondrial mRNAs in T. brucei by extensive uridine insertion and deletion at numerous editing sites (ESs) as specified by guide RNAs (gRNAs). The editing is performed by three RNA Editing Catalytic Complexes (RECCs) which each have a different endonuclease in addition to 12 proteins in common resulting in RECC1 that is specific for deletion ESs and RECC2 and RECC3 that are specific for insertion ESs. Thus, different RECCs are required for editing of mRNA sequence regions where single gRNAs specify a combination of insertion and deletion ESs. We investigated how the three different RECCs might edit combinations of insertion and deletion ESs that are specified by single gRNAs by testing whether their endonuclease compositions are stable or dynamic during editing. We analyzed in vivo BirA* proximity labeling and found that the endonucleases remain associated with their set of common RECC proteins during editing when expressed at normal physiological levels. We also found that overexpression of endonuclease components resulted in minor effects on RECCs but did not affect growth. Thus, the protein stoichiometries that exist within each RECC can be altered by perturbations of RECC expression levels. These results indicate that editing of consecutive insertion and deletion ESs occurs by successive engagement and disengagement of RECCs, i.e., is non-processive, which is likely the case for consecutive pairs of insertion or deletion ESs. This clarifies the nature of the complex patterns of partially edited mRNAs that occur in vivo.

RNA编辑通过在引导RNA(gRNA)指定的许多编辑位点(ES)上广泛插入和缺失尿苷,在布鲁氏菌中产生成熟的线粒体mRNA。编辑是由三种RNA编辑催化复合物(RECCs)进行的,除了12种共同的蛋白质外,每一种都具有不同的核酸内切酶,从而产生对缺失ES特异性的RECC1和对插入ES特异性的RECC2和RECC3。因此,需要不同的RECC来编辑mRNA序列区域,其中单个gRNA指定插入和缺失ES的组合。我们通过测试三种不同的RECC的核酸内切酶组成在编辑过程中是稳定的还是动态的,研究了它们如何编辑由单个gRNA指定的插入和缺失ES的组合。我们分析了体内BirA*邻近标记,发现当在正常生理水平下表达时,核酸内切酶在编辑过程中仍与其一组常见的RECC蛋白相关。我们还发现,核酸内切酶组分的过表达对RECCs的影响很小,但不影响生长。因此,存在于每个RECC内的蛋白质化学计量可以通过RECC表达水平的扰动来改变。这些结果表明,连续插入和删除ES的编辑是通过RECC的连续接合和脱离而发生的,即,是非处理性的,这可能是连续插入或删除ES对的情况。这阐明了体内发生的部分编辑的信使核糖核酸的复杂模式的性质。
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引用次数: 0
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Molecular and biochemical parasitology
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